Wall clock time and date at job start Wed Apr 1 2020 01:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.52994 * 109.47404 * 175.00005 * 3 2 1 6 6 N 1.46498 * 109.47454 * 174.99769 * 5 3 2 7 7 C 1.34778 * 120.00621 * 180.02562 * 6 5 3 8 8 O 1.21696 * 119.99608 * 0.02562 * 7 6 5 9 9 C 1.46678 * 120.00730 * 180.02562 * 7 6 5 10 10 C 1.35670 * 126.12656 * 0.02562 * 9 7 6 11 11 N 1.30933 * 114.18748 * 180.02562 * 10 9 7 12 12 C 1.29426 * 117.37276 * 0.02562 * 11 10 9 13 13 C 1.50692 * 124.81095 * 180.02562 * 12 11 10 14 14 H 1.08999 * 110.33292 * 197.22562 * 13 12 11 15 15 C 1.54477 * 110.37380 * 74.97327 * 13 12 11 16 16 C 1.54512 * 104.06241 * 217.18847 * 15 13 12 17 17 C 1.54473 * 104.06524 * 0.02562 * 16 15 13 18 18 O 1.44426 * 110.37460 * 319.59119 * 13 12 11 19 19 S 1.70961 * 110.38394 * 359.72356 * 12 11 10 20 20 N 1.46504 * 109.47349 * 295.00344 * 3 2 1 21 21 C 1.36937 * 119.99909 * 84.99509 * 20 3 2 22 22 H 1.07997 * 120.00325 * 0.02562 * 21 20 3 23 23 C 1.38812 * 119.99830 * 179.97438 * 21 20 3 24 24 N 1.31625 * 120.00068 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 120.00035 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46676 * 60.00312 * 25 23 21 27 27 H 1.48495 * 109.46742 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47070 * 300.00682 * 25 23 21 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 34 34 H 1.08996 * 109.47643 * 294.99938 * 5 3 2 35 35 H 1.09004 * 109.47057 * 55.00109 * 5 3 2 36 36 H 0.97001 * 120.00027 * 0.02562 * 6 5 3 37 37 H 1.07995 * 122.90428 * 0.04507 * 10 9 7 38 38 H 1.08998 * 110.51198 * 335.83680 * 15 13 12 39 39 H 1.09008 * 110.51046 * 98.41006 * 15 13 12 40 40 H 1.09005 * 110.50741 * 118.64779 * 16 15 13 41 41 H 1.09000 * 110.51271 * 241.21679 * 16 15 13 42 42 H 1.08995 * 110.37295 * 142.80416 * 17 16 15 43 43 H 1.08998 * 110.37046 * 265.03479 * 17 16 15 44 44 H 0.97001 * 119.99585 * 265.00132 * 20 3 2 45 45 H 0.96997 * 119.99902 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5647 1.4444 0.1257 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0857 8 8 6.1662 2.1453 0.2569 9 6 5.8844 4.4373 -0.0337 10 6 5.1297 5.5484 -0.2248 11 7 5.8192 6.6591 -0.2984 12 6 7.1053 6.5698 -0.1840 13 6 8.0572 7.7366 -0.2424 14 1 9.0734 7.3875 -0.4253 15 6 7.9953 8.5474 1.0710 16 6 8.1468 10.0154 0.6134 17 6 8.2815 9.9180 -0.9223 18 8 7.6502 8.6666 -1.2697 19 16 7.5706 4.9417 0.0512 20 7 1.6524 2.0975 -1.2518 21 6 0.4155 2.6735 -1.3687 22 1 -0.2741 2.6452 -0.5380 23 6 0.0484 3.2946 -2.5546 24 7 0.8891 3.3296 -3.5668 25 14 -1.6391 4.0796 -2.7144 26 1 -1.7885 5.1447 -1.6904 27 1 -1.7837 4.6708 -4.0689 28 1 -2.6867 3.0470 -2.5110 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.8499 1.0378 1.0960 35 1 3.9954 0.8312 -0.6660 36 1 3.4409 3.5484 -0.1309 37 1 4.0534 5.5193 -0.3086 38 1 7.0360 8.3989 1.5667 39 1 8.8140 8.2651 1.7330 40 1 7.2622 10.5926 0.8830 41 1 9.0403 10.4614 1.0502 42 1 7.7657 10.7497 -1.4020 43 1 9.3325 9.9069 -1.2110 44 1 2.2719 2.1232 -1.9978 45 1 0.6324 3.7633 -4.3956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269482319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:57 Heat of formation + Delta-G solvation = -29.429164 kcal Electronic energy + Delta-G solvation = -26659.735582 eV Core-core repulsion = 22804.302523 eV Total energy + Delta-G solvation = -3855.433059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.38306 -39.57429 -38.69538 -36.71513 -33.83156 -32.57768 -32.41082 -31.73316 -29.87782 -29.31923 -27.54129 -25.73240 -23.84001 -23.28965 -22.64128 -21.73547 -21.24506 -20.13449 -19.30920 -18.52573 -17.48663 -17.02980 -16.60004 -16.06780 -15.47541 -15.43566 -15.36440 -14.93309 -14.35722 -14.29510 -14.05342 -13.90611 -13.69103 -13.34041 -13.23449 -13.01757 -12.66244 -12.23266 -12.13679 -11.98584 -11.68610 -11.64218 -11.48028 -11.07598 -10.98371 -10.88785 -10.78161 -10.48356 -10.24804 -10.22032 -10.20285 -10.04048 -9.57344 -9.54400 -9.50063 -9.06041 -8.97377 -8.70885 -7.06315 -5.82717 -3.12736 0.15074 0.99879 1.54660 2.43698 3.30231 3.39756 3.45161 3.46690 3.49425 3.60078 3.81527 4.28031 4.42232 4.51820 4.53108 4.68861 4.85630 4.93833 5.03625 5.21829 5.25162 5.34968 5.36049 5.41941 5.44802 5.52906 5.60586 5.69155 5.87932 5.92728 5.93280 5.96874 6.11095 6.39244 6.41978 6.48499 6.54145 6.57563 6.78896 6.98823 7.22865 7.57283 7.64533 7.75182 8.33684 8.36484 9.46156 10.00084 10.35957 11.38764 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.002848 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.550317 B = 9828.973599 C =11638.434854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.055 0.945 5 C 0.116 3.884 6 N -0.696 5.696 7 C 0.590 3.410 8 O -0.549 6.549 9 C -0.281 4.281 10 C 0.096 3.904 11 N -0.449 5.449 12 C 0.030 3.970 13 C 0.154 3.846 14 H 0.092 0.908 15 C -0.143 4.143 16 C -0.152 4.152 17 C 0.042 3.958 18 O -0.348 6.348 19 S 0.230 5.770 20 N -0.722 5.722 21 C -0.241 4.241 22 H 0.073 0.927 23 C -0.009 4.009 24 N -0.928 5.928 25 Si 0.903 3.097 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.286 1.286 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.412 0.588 37 H 0.188 0.812 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.250 8.908 10.494 21.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.073 0.927 5 C -0.009 4.009 6 N -0.347 5.347 7 C 0.374 3.626 8 O -0.429 6.429 9 C -0.406 4.406 10 C -0.062 4.062 11 N -0.163 5.163 12 C -0.245 4.245 13 C 0.092 3.908 14 H 0.110 0.890 15 C -0.182 4.182 16 C -0.190 4.190 17 C -0.035 4.035 18 O -0.266 6.266 19 S 0.488 5.512 20 N -0.364 5.364 21 C -0.372 4.372 22 H 0.091 0.909 23 C -0.206 4.206 24 N -0.575 5.575 25 Si 0.734 3.266 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.213 1.213 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.249 0.751 37 H 0.205 0.795 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.249 8.300 10.490 21.827 hybrid contribution -2.064 0.764 -0.542 2.266 sum 15.185 9.064 9.948 20.290 Atomic orbital electron populations 1.21769 0.95663 0.99662 1.03285 1.22066 0.97021 0.98275 1.00071 1.20578 0.89650 0.92990 0.91567 0.92719 1.21763 0.95840 0.81814 1.01435 1.45746 1.06129 1.11344 1.71481 1.16669 0.83018 0.85575 0.77294 1.90813 1.56018 1.45159 1.50905 1.25898 0.97353 0.99811 1.17524 1.22393 1.02034 0.84905 0.96894 1.66024 1.04803 1.30690 1.14755 1.27101 0.94582 0.98660 1.04173 1.21372 0.93556 0.86707 0.89116 0.89007 1.22994 1.04127 0.94445 0.96646 1.22930 1.03265 0.96603 0.96185 1.23461 0.98000 0.87441 0.94582 1.89314 1.71476 1.19748 1.46071 1.83822 1.05137 0.99225 1.63045 1.42461 1.16834 1.65884 1.11242 1.19137 0.91972 1.28044 0.98030 0.90939 1.24738 0.98011 1.01436 0.96367 1.69647 1.35222 1.48668 1.03993 0.86344 0.84240 0.79221 0.76817 1.21246 1.21770 1.21295 0.94112 0.89619 0.94864 0.93812 0.92471 0.91475 0.91438 0.75110 0.79508 0.89720 0.89740 0.90200 0.90206 0.88566 0.91959 0.78068 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.18 37.16 0.34 -2.23 16 2 C -0.13 -2.25 5.61 -26.73 -0.15 -2.40 16 3 C 0.16 2.92 2.59 -67.93 -0.18 2.75 16 4 H 0.05 0.99 8.08 -51.92 -0.42 0.57 16 5 C 0.12 1.92 5.23 -4.05 -0.02 1.90 16 6 N -0.70 -11.57 5.37 -61.62 -0.33 -11.90 16 7 C 0.59 10.14 7.79 -12.85 -0.10 10.04 16 8 O -0.55 -10.72 16.97 5.19 0.09 -10.64 16 9 C -0.28 -4.30 6.48 -37.09 -0.24 -4.54 16 10 C 0.10 1.44 10.93 -18.85 -0.21 1.24 16 11 N -0.45 -6.81 10.47 -11.50 -0.12 -6.93 16 12 C 0.03 0.38 6.24 -13.30 -0.08 0.30 16 13 C 0.15 1.55 3.80 -27.11 -0.10 1.45 16 14 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 15 C -0.14 -1.11 6.62 -25.16 -0.17 -1.28 16 16 C -0.15 -0.98 7.09 -25.16 -0.18 -1.16 16 17 C 0.04 0.32 7.63 37.93 0.29 0.61 16 18 O -0.35 -4.22 11.30 -35.23 -0.40 -4.61 16 19 S 0.23 2.87 23.01 -107.50 -2.47 0.39 16 20 N -0.72 -16.13 4.51 -53.43 -0.24 -16.37 16 21 C -0.24 -6.02 7.75 -15.06 -0.12 -6.13 16 22 H 0.07 1.77 7.32 -52.49 -0.38 1.38 16 23 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 24 N -0.93 -26.62 13.06 55.49 0.72 -25.90 16 25 Si 0.90 21.46 29.55 -169.99 -5.02 16.43 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.79 5.99 -51.93 -0.31 1.47 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.41 6.85 6.85 -40.82 -0.28 6.57 16 37 H 0.19 2.66 7.15 -52.49 -0.38 2.28 16 38 H 0.08 0.79 7.86 -51.93 -0.41 0.38 16 39 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.39 9.50 7.80 -40.82 -0.32 9.18 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -31.37 385.08 -9.68 -41.06 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -6.70 Total: 12.44 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.01 Total: 0.22 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: 0.03 Total: -61.10 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.31 Total: -15.25 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -2.47 Total: 0.39 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.37 -9.68 -41.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269482319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.628 kcal (2) G-P(sol) polarization free energy of solvation -31.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds