Wall clock time and date at job start Wed Apr 1 2020 01:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.52994 * 109.47404 * 175.00005 * 3 2 1 6 6 N 1.46498 * 109.47454 * 174.99769 * 5 3 2 7 7 C 1.34778 * 120.00621 * 180.02562 * 6 5 3 8 8 O 1.21696 * 119.99608 * 0.02562 * 7 6 5 9 9 C 1.46678 * 120.00730 * 180.02562 * 7 6 5 10 10 C 1.35670 * 126.12656 * 0.02562 * 9 7 6 11 11 N 1.30933 * 114.18748 * 180.02562 * 10 9 7 12 12 C 1.29426 * 117.37276 * 0.02562 * 11 10 9 13 13 C 1.50692 * 124.81095 * 180.02562 * 12 11 10 14 14 H 1.08999 * 110.33292 * 197.22562 * 13 12 11 15 15 C 1.54477 * 110.37380 * 74.97327 * 13 12 11 16 16 C 1.54512 * 104.06241 * 217.18847 * 15 13 12 17 17 C 1.54473 * 104.06524 * 0.02562 * 16 15 13 18 18 O 1.44426 * 110.37460 * 319.59119 * 13 12 11 19 19 S 1.70961 * 110.38394 * 359.72356 * 12 11 10 20 20 N 1.46504 * 109.47349 * 295.00344 * 3 2 1 21 21 C 1.36937 * 119.99909 * 84.99509 * 20 3 2 22 22 H 1.07997 * 120.00325 * 0.02562 * 21 20 3 23 23 C 1.38812 * 119.99830 * 179.97438 * 21 20 3 24 24 N 1.31625 * 120.00068 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 120.00035 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46676 * 60.00312 * 25 23 21 27 27 H 1.48495 * 109.46742 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47070 * 300.00682 * 25 23 21 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 34 34 H 1.08996 * 109.47643 * 294.99938 * 5 3 2 35 35 H 1.09004 * 109.47057 * 55.00109 * 5 3 2 36 36 H 0.97001 * 120.00027 * 0.02562 * 6 5 3 37 37 H 1.07995 * 122.90428 * 0.04507 * 10 9 7 38 38 H 1.08998 * 110.51198 * 335.83680 * 15 13 12 39 39 H 1.09008 * 110.51046 * 98.41006 * 15 13 12 40 40 H 1.09005 * 110.50741 * 118.64779 * 16 15 13 41 41 H 1.09000 * 110.51271 * 241.21679 * 16 15 13 42 42 H 1.08995 * 110.37295 * 142.80416 * 17 16 15 43 43 H 1.08998 * 110.37046 * 265.03479 * 17 16 15 44 44 H 0.97001 * 119.99585 * 265.00132 * 20 3 2 45 45 H 0.96997 * 119.99902 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5647 1.4444 0.1257 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0857 8 8 6.1662 2.1453 0.2569 9 6 5.8844 4.4373 -0.0337 10 6 5.1297 5.5484 -0.2248 11 7 5.8192 6.6591 -0.2984 12 6 7.1053 6.5698 -0.1840 13 6 8.0572 7.7366 -0.2424 14 1 9.0734 7.3875 -0.4253 15 6 7.9953 8.5474 1.0710 16 6 8.1468 10.0154 0.6134 17 6 8.2815 9.9180 -0.9223 18 8 7.6502 8.6666 -1.2697 19 16 7.5706 4.9417 0.0512 20 7 1.6524 2.0975 -1.2518 21 6 0.4155 2.6735 -1.3687 22 1 -0.2741 2.6452 -0.5380 23 6 0.0484 3.2946 -2.5546 24 7 0.8891 3.3296 -3.5668 25 14 -1.6391 4.0796 -2.7144 26 1 -1.7885 5.1447 -1.6904 27 1 -1.7837 4.6708 -4.0689 28 1 -2.6867 3.0470 -2.5110 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.8499 1.0378 1.0960 35 1 3.9954 0.8312 -0.6660 36 1 3.4409 3.5484 -0.1309 37 1 4.0534 5.5193 -0.3086 38 1 7.0360 8.3989 1.5667 39 1 8.8140 8.2651 1.7330 40 1 7.2622 10.5926 0.8830 41 1 9.0403 10.4614 1.0502 42 1 7.7657 10.7497 -1.4020 43 1 9.3325 9.9069 -1.2110 44 1 2.2719 2.1232 -1.9978 45 1 0.6324 3.7633 -4.3956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269482319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:56 Heat of formation + Delta-G solvation = -51.525471 kcal Electronic energy + Delta-G solvation = -26660.693750 eV Core-core repulsion = 22804.302523 eV Total energy + Delta-G solvation = -3856.391227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.43884 -40.65188 -39.74004 -38.26923 -35.34598 -34.20205 -33.28181 -32.64015 -31.49917 -30.48068 -28.93602 -26.68106 -25.59034 -24.36635 -23.92202 -22.55447 -22.21331 -21.60446 -20.53735 -19.60711 -19.14969 -18.37950 -17.38103 -17.07832 -16.88208 -16.59711 -16.42635 -16.17477 -15.83521 -15.59772 -15.28499 -15.03897 -14.81167 -14.67205 -14.53690 -14.19590 -14.06337 -13.78523 -12.98403 -12.81716 -12.75348 -12.74126 -12.73965 -12.68149 -12.38003 -12.25570 -12.14563 -11.90200 -11.65581 -11.61142 -11.51196 -11.31650 -10.91474 -10.88450 -10.69981 -10.61672 -10.20341 -9.96815 -8.97513 -7.87138 -5.14244 -0.94879 -0.04189 0.47431 1.28417 1.51005 1.51172 1.56975 2.02761 2.20950 2.60073 2.76369 3.03664 3.46671 3.59215 3.68597 3.70976 3.89036 3.92397 3.94410 4.04964 4.14350 4.24071 4.36175 4.37773 4.48393 4.57110 4.67618 4.72579 4.82461 4.87675 4.87998 4.95709 5.05298 5.09697 5.12064 5.16034 5.21413 5.38993 5.56244 5.62008 5.73836 5.78201 6.32533 6.37926 6.51553 7.00774 7.40907 8.12588 8.37046 9.35311 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.002848 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.550317 B = 9828.973599 C =11638.434854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.164 3.836 4 H 0.061 0.939 5 C 0.123 3.877 6 N -0.695 5.695 7 C 0.592 3.408 8 O -0.576 6.576 9 C -0.314 4.314 10 C 0.099 3.901 11 N -0.482 5.482 12 C 0.037 3.963 13 C 0.144 3.856 14 H 0.122 0.878 15 C -0.140 4.140 16 C -0.146 4.146 17 C 0.035 3.965 18 O -0.387 6.387 19 S 0.277 5.723 20 N -0.728 5.728 21 C -0.216 4.216 22 H 0.081 0.919 23 C -0.072 4.072 24 N -0.967 5.967 25 Si 0.957 3.043 26 H -0.279 1.279 27 H -0.305 1.305 28 H -0.282 1.282 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.411 0.589 37 H 0.186 0.814 38 H 0.063 0.937 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.372 0.628 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.571 9.301 12.507 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.055 3.945 4 H 0.079 0.921 5 C -0.001 4.001 6 N -0.346 5.346 7 C 0.378 3.622 8 O -0.459 6.459 9 C -0.439 4.439 10 C -0.060 4.060 11 N -0.197 5.197 12 C -0.238 4.238 13 C 0.083 3.917 14 H 0.139 0.861 15 C -0.180 4.180 16 C -0.184 4.184 17 C -0.041 4.041 18 O -0.307 6.307 19 S 0.536 5.464 20 N -0.369 5.369 21 C -0.348 4.348 22 H 0.099 0.901 23 C -0.264 4.264 24 N -0.618 5.618 25 Si 0.788 3.212 26 H -0.205 1.205 27 H -0.232 1.232 28 H -0.208 1.208 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.248 0.752 37 H 0.202 0.798 38 H 0.082 0.918 39 H 0.132 0.868 40 H 0.091 0.909 41 H 0.127 0.873 42 H 0.116 0.884 43 H 0.103 0.897 44 H 0.204 0.796 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 18.564 8.676 12.563 24.036 hybrid contribution -2.392 0.642 -1.081 2.702 sum 16.172 9.317 11.483 21.913 Atomic orbital electron populations 1.21700 0.95989 1.00588 1.01808 1.21982 0.96610 0.97179 1.01181 1.20743 0.90661 0.93500 0.89593 0.92062 1.21698 0.94559 0.81807 1.02079 1.45744 1.06208 1.11340 1.71264 1.16843 0.82770 0.86066 0.76504 1.90785 1.56519 1.46106 1.52449 1.25805 0.99408 0.98871 1.19776 1.22405 1.02175 0.85076 0.96328 1.66082 1.06080 1.30851 1.16650 1.27776 0.94410 0.99995 1.01592 1.21800 0.93806 0.85999 0.90073 0.86070 1.23030 1.04218 0.94953 0.95761 1.22934 1.04375 0.95731 0.95317 1.23712 0.99011 0.85896 0.95521 1.89268 1.72663 1.21584 1.47142 1.83564 1.02712 0.98157 1.61956 1.42586 1.15809 1.66128 1.12363 1.19443 0.92502 1.25357 0.97448 0.90124 1.25359 1.00833 1.03502 0.96708 1.69799 1.36824 1.50913 1.04285 0.85449 0.81240 0.78543 0.75965 1.20523 1.23238 1.20824 0.93125 0.93342 0.92888 0.90443 0.93560 0.89428 0.92562 0.75187 0.79764 0.91762 0.86817 0.90899 0.87300 0.88427 0.89720 0.79602 0.94538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.18 71.98 0.66 -4.09 16 2 C -0.13 -4.09 5.61 30.59 0.17 -3.92 16 3 C 0.16 5.69 2.59 44.99 0.12 5.81 16 4 H 0.06 2.09 8.08 -2.38 -0.02 2.07 16 5 C 0.12 3.96 5.23 86.38 0.45 4.41 16 6 N -0.70 -23.13 5.37 -467.09 -2.51 -25.64 16 7 C 0.59 20.39 7.79 86.45 0.67 21.07 16 8 O -0.58 -22.37 16.97 -4.34 -0.07 -22.45 16 9 C -0.31 -9.63 6.48 23.88 0.15 -9.47 16 10 C 0.10 3.05 10.93 84.23 0.92 3.97 16 11 N -0.48 -14.74 10.47 -190.31 -1.99 -16.74 16 12 C 0.04 0.91 6.24 88.46 0.55 1.46 16 13 C 0.14 2.65 3.80 30.35 0.12 2.77 16 14 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 15 C -0.14 -1.87 6.62 31.61 0.21 -1.66 16 16 C -0.15 -1.53 7.09 31.61 0.22 -1.31 16 17 C 0.03 0.47 7.63 72.48 0.55 1.02 16 18 O -0.39 -9.01 11.30 -148.98 -1.68 -10.69 16 19 S 0.28 6.62 23.01 -56.49 -1.30 5.32 16 20 N -0.73 -32.63 4.51 -322.94 -1.46 -34.09 16 21 C -0.22 -10.76 7.75 84.03 0.65 -10.10 16 22 H 0.08 3.85 7.32 -2.91 -0.02 3.83 16 23 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 24 N -0.97 -57.13 13.06 21.65 0.28 -56.85 16 25 Si 0.96 44.76 29.55 68.60 2.03 46.79 16 26 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 27 H -0.31 -14.86 7.11 99.48 0.71 -14.15 16 28 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.97 5.99 -2.39 -0.01 1.95 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.41 13.86 6.85 -92.71 -0.63 13.22 16 37 H 0.19 5.50 7.15 -2.91 -0.02 5.48 16 38 H 0.06 1.13 7.86 -2.39 -0.02 1.11 16 39 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.11 0.52 8.14 -2.39 -0.02 0.51 16 42 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.37 18.73 7.80 -92.71 -0.72 18.01 16 45 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -68.86 385.08 -1.12 -69.97 By element: Atomic # 1 Polarization: 38.18 SS G_CDS: -0.34 Total: 37.85 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 5.92 Total: 6.53 kcal Atomic # 7 Polarization: -127.64 SS G_CDS: -5.67 Total: -133.31 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -1.76 Total: -33.14 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: 6.62 SS G_CDS: -1.30 Total: 5.32 kcal Total: -68.86 -1.12 -69.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269482319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.447 kcal (2) G-P(sol) polarization free energy of solvation -68.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds