Wall clock time and date at job start Wed Apr 1 2020 01:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46960 * 2 1 4 4 H 1.09004 * 109.46901 * 305.00163 * 3 2 1 5 5 C 1.52993 * 109.47133 * 185.00224 * 3 2 1 6 6 N 1.46493 * 109.47346 * 185.00123 * 5 3 2 7 7 C 1.34781 * 120.00398 * 180.02562 * 6 5 3 8 8 O 1.21273 * 119.99559 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00160 * 179.97438 * 7 6 5 10 10 N 1.46492 * 109.47199 * 179.97438 * 9 7 6 11 11 C 1.34778 * 120.00064 * 180.02562 * 10 9 7 12 12 O 1.21704 * 119.99860 * 0.02562 * 11 10 9 13 13 C 1.46582 * 119.99734 * 180.02562 * 11 10 9 14 14 C 1.36654 * 125.45205 * 179.71783 * 13 11 10 15 15 C 1.37478 * 113.28988 * 179.80182 * 14 13 11 16 16 C 1.33820 * 115.10437 * 0.49137 * 15 14 13 17 17 C 1.50699 * 124.52055 * 179.70599 * 16 15 14 18 18 S 1.70611 * 110.95309 * 359.73175 * 16 15 14 19 19 N 1.46493 * 109.46887 * 64.99846 * 3 2 1 20 20 C 1.36936 * 120.00314 * 274.99849 * 19 3 2 21 21 H 1.08001 * 120.00159 * 0.02562 * 20 19 3 22 22 C 1.38811 * 119.99842 * 180.02562 * 20 19 3 23 23 N 1.31624 * 119.99540 * 179.72505 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 H 1.08991 * 109.47041 * 60.00392 * 1 2 3 29 29 H 1.09002 * 109.46608 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47269 * 299.99541 * 1 2 3 31 31 H 1.09000 * 109.47269 * 240.00459 * 2 1 3 32 32 H 1.09000 * 109.47618 * 119.99782 * 2 1 3 33 33 H 1.09009 * 109.47018 * 304.99771 * 5 3 2 34 34 H 1.09002 * 109.47579 * 64.99441 * 5 3 2 35 35 H 0.96998 * 119.99959 * 359.97438 * 6 5 3 36 36 H 1.08997 * 109.47068 * 300.00505 * 9 7 6 37 37 H 1.09008 * 109.46877 * 59.99887 * 9 7 6 38 38 H 0.97000 * 120.00021 * 359.97438 * 10 9 7 39 39 H 1.07986 * 123.35597 * 0.02562 * 14 13 11 40 40 H 1.08005 * 122.44709 * 180.24865 * 15 14 13 41 41 H 1.09004 * 109.46470 * 180.02562 * 17 16 15 42 42 H 1.09001 * 109.47351 * 300.00011 * 17 16 15 43 43 H 1.09001 * 109.47126 * 60.00568 * 17 16 15 44 44 H 0.97000 * 120.00040 * 94.99981 * 19 3 2 45 45 H 0.96999 * 119.99889 * 180.27497 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0632 -0.0869 8 8 6.1633 2.1486 -0.2584 9 6 5.8980 4.4751 0.0357 10 7 7.3580 4.4769 -0.0846 11 6 8.0393 5.6371 -0.0047 12 8 7.4417 6.6831 0.1678 13 6 9.5002 5.6388 -0.1257 14 6 10.2990 6.7461 -0.0674 15 6 11.6363 6.4594 -0.2061 16 6 11.9241 5.1645 -0.3827 17 6 13.3160 4.6158 -0.5633 18 16 10.5048 4.2178 -0.3767 19 7 1.6524 2.0975 1.2518 20 6 0.4156 2.6734 1.3688 21 1 -0.2743 2.6446 0.5383 22 6 0.0486 3.2944 2.5547 23 7 -1.1382 3.8528 2.6653 24 14 1.2421 3.3451 3.9909 25 1 1.0351 2.1507 4.8488 26 1 2.6352 3.3499 3.4768 27 1 1.0047 4.5748 4.7887 28 1 -0.3633 0.5137 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8900 33 1 3.9954 0.8312 0.6659 34 1 3.8499 1.0377 -1.0961 35 1 3.4409 3.5484 0.1308 36 1 5.4671 5.0881 -0.7558 37 1 5.6133 4.8820 1.0061 38 1 7.8345 3.6431 -0.2209 39 1 9.9180 7.7461 0.0772 40 1 12.3987 7.2239 -0.1787 41 1 13.2668 3.5340 -0.6871 42 1 13.7706 5.0621 -1.4478 43 1 13.9173 4.8545 0.3140 44 1 2.2718 2.1231 1.9978 45 1 -1.3932 4.2902 3.4927 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269503043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:17 Heat of formation + Delta-G solvation = -37.151423 kcal Electronic energy + Delta-G solvation = -26121.285757 eV Core-core repulsion = 22265.517835 eV Total energy + Delta-G solvation = -3855.767921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.30724 -39.36461 -38.03180 -36.99364 -34.65320 -33.96718 -32.49939 -32.39295 -30.35225 -29.54572 -28.02699 -26.52939 -23.97314 -23.46160 -22.47471 -21.57805 -20.58821 -20.19532 -19.60850 -18.42745 -17.75599 -16.88534 -16.47828 -16.11911 -15.97212 -15.51351 -15.43389 -14.85367 -14.75982 -14.31902 -14.15054 -13.96812 -13.51467 -13.34581 -13.24686 -13.20921 -12.89656 -12.75613 -12.71171 -12.47453 -12.24705 -12.20549 -11.63212 -11.26727 -11.22045 -11.02478 -10.78230 -10.46448 -10.38196 -10.34742 -10.07043 -9.94797 -9.53741 -9.47368 -9.03872 -8.99893 -8.95308 -8.92181 -7.40089 -5.85625 -3.22405 0.15541 1.09223 1.50765 2.04024 2.54353 2.64715 2.96332 3.30298 3.34594 3.40152 3.42800 4.32889 4.50754 4.52497 4.72089 4.74359 4.94977 5.01913 5.11409 5.19695 5.20044 5.21142 5.26852 5.39511 5.43678 5.62692 5.69351 5.79446 5.81969 5.84087 5.93245 6.00219 6.02860 6.21128 6.37496 6.45427 6.52874 6.65659 6.87901 7.18922 7.24893 7.55931 7.89223 7.89527 8.17235 8.32405 9.09812 9.82121 10.00839 11.31821 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016878 B = 0.002243 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.562600 B =12478.838527 C =13518.754000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.168 3.832 4 H 0.064 0.936 5 C 0.112 3.888 6 N -0.707 5.707 7 C 0.506 3.494 8 O -0.551 6.551 9 C 0.098 3.902 10 N -0.714 5.714 11 C 0.593 3.407 12 O -0.528 6.528 13 C -0.271 4.271 14 C -0.048 4.048 15 C -0.159 4.159 16 C -0.196 4.196 17 C -0.086 4.086 18 S 0.210 5.790 19 N -0.747 5.747 20 C -0.244 4.244 21 H 0.095 0.905 22 C 0.008 3.992 23 N -0.929 5.929 24 Si 0.881 3.119 25 H -0.285 1.285 26 H -0.278 1.278 27 H -0.292 1.292 28 H 0.042 0.958 29 H 0.033 0.967 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.414 0.586 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.409 0.591 39 H 0.154 0.846 40 H 0.145 0.855 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.362 0.638 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.902 0.038 -8.252 27.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.082 0.918 5 C -0.013 4.013 6 N -0.359 5.359 7 C 0.291 3.709 8 O -0.430 6.430 9 C -0.029 4.029 10 N -0.368 5.368 11 C 0.379 3.621 12 O -0.406 6.406 13 C -0.391 4.391 14 C -0.081 4.081 15 C -0.190 4.190 16 C -0.315 4.315 17 C -0.144 4.144 18 S 0.477 5.523 19 N -0.390 5.390 20 C -0.374 4.374 21 H 0.113 0.887 22 C -0.189 4.189 23 N -0.576 5.576 24 Si 0.712 3.288 25 H -0.212 1.212 26 H -0.204 1.204 27 H -0.218 1.218 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.251 0.749 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.247 0.753 39 H 0.172 0.828 40 H 0.163 0.837 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 25.434 -1.349 -8.452 26.835 hybrid contribution 0.923 1.552 1.377 2.271 sum 26.357 0.202 -7.075 27.291 Atomic orbital electron populations 1.21782 0.95145 0.99751 1.03822 1.22038 0.97419 0.97750 1.00114 1.20558 0.89639 0.93122 0.90898 0.91827 1.21786 0.95748 0.82086 1.01640 1.45921 1.06753 1.11373 1.71835 1.20379 0.83156 0.90474 0.76848 1.90662 1.55942 1.46039 1.50377 1.21129 0.81104 0.95260 1.05364 1.45530 1.06965 1.09961 1.74391 1.16886 0.84984 0.83603 0.76634 1.90858 1.69186 1.31279 1.49301 1.24481 0.97032 0.98258 1.19352 1.20761 0.91889 0.99328 0.96147 1.19946 0.96619 0.95977 1.06438 1.24317 1.01458 0.98291 1.07476 1.20405 0.89819 1.01025 1.03196 1.83214 0.94492 1.08218 1.66334 1.42833 1.16868 1.67676 1.11664 1.19035 0.90593 1.27885 0.99863 0.88723 1.24673 0.96376 1.00247 0.97560 1.69689 1.19451 1.41608 1.26878 0.86622 0.80993 0.77356 0.83853 1.21217 1.20433 1.21794 0.93851 0.94837 0.89320 0.93540 0.92650 0.91643 0.91179 0.74897 0.87783 0.87767 0.75325 0.82827 0.83741 0.91174 0.90149 0.90140 0.80520 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.18 37.16 0.34 -2.22 16 2 C -0.13 -2.09 5.61 -26.73 -0.15 -2.24 16 3 C 0.17 2.79 2.59 -67.93 -0.18 2.62 16 4 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 5 C 0.11 1.64 5.23 -4.05 -0.02 1.62 16 6 N -0.71 -10.09 5.39 -60.30 -0.32 -10.41 16 7 C 0.51 7.15 7.90 -10.98 -0.09 7.06 16 8 O -0.55 -8.96 15.67 5.56 0.09 -8.87 16 9 C 0.10 1.23 6.15 -5.20 -0.03 1.20 16 10 N -0.71 -8.95 5.52 -62.83 -0.35 -9.30 16 11 C 0.59 7.97 7.78 -12.89 -0.10 7.87 16 12 O -0.53 -8.64 16.84 5.19 0.09 -8.56 16 13 C -0.27 -3.02 6.45 -36.79 -0.24 -3.26 16 14 C -0.05 -0.47 10.01 -40.43 -0.40 -0.88 16 15 C -0.16 -1.25 10.00 -41.41 -0.41 -1.66 16 16 C -0.20 -1.46 6.28 -35.86 -0.23 -1.69 16 17 C -0.09 -0.40 10.33 36.01 0.37 -0.03 16 18 S 0.21 1.81 22.08 -107.50 -2.37 -0.56 16 19 N -0.75 -15.35 4.31 -53.43 -0.23 -15.58 16 20 C -0.24 -6.11 8.24 -15.06 -0.12 -6.24 16 21 H 0.10 2.56 7.55 -52.49 -0.40 2.16 16 22 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 23 N -0.93 -27.61 13.97 55.49 0.78 -26.83 16 24 Si 0.88 21.04 27.74 -169.99 -4.72 16.32 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.20 6.51 56.52 0.37 -5.83 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 1.86 5.99 -51.93 -0.31 1.55 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.41 5.94 8.14 -40.82 -0.33 5.60 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.10 1.30 8.14 -51.92 -0.42 0.88 16 38 H 0.41 4.89 6.55 -40.82 -0.27 4.62 16 39 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 40 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.07 0.28 8.11 -51.93 -0.42 -0.14 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.36 7.58 5.65 -40.82 -0.23 7.35 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 389.42 15.07 5.87 5.87 Total: -1.00 -31.74 389.42 -9.15 -40.89 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -6.62 Total: 14.76 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -1.35 Total: 2.28 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.13 Total: -62.13 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.17 Total: -17.43 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.72 Total: 16.32 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.37 Total: -0.56 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.74 -9.15 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269503043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.738 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds