Wall clock time and date at job start Wed Apr 1 2020 01:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50696 * 120.00115 * 2 1 4 4 N 1.46504 * 109.47258 * 125.00002 * 3 2 1 5 5 C 1.34774 * 120.00210 * 180.02562 * 4 3 2 6 6 S 1.71195 * 120.00235 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99773 * 180.02562 * 5 4 3 8 8 C 1.47663 * 134.45465 * 179.97438 * 7 5 4 9 9 C 1.53504 * 85.98199 * 155.69617 * 8 7 5 10 10 C 1.47667 * 134.46212 * 0.02562 * 7 5 4 11 11 C 1.52775 * 113.51507 * 269.06188 * 9 8 7 12 12 O 1.43385 * 108.24369 * 273.83821 * 11 9 8 13 13 C 1.42825 * 113.34170 * 294.36606 * 12 11 9 14 14 C 1.50280 * 110.49715 * 51.30535 * 13 12 11 15 15 O 1.21282 * 118.96933 * 161.60073 * 14 13 12 16 16 N 1.34274 * 122.05565 * 341.62017 * 14 13 12 17 17 C 1.46503 * 119.37732 * 181.94524 * 16 14 13 18 18 C 1.52998 * 109.47005 * 90.00134 * 17 16 14 19 19 C 1.50697 * 109.47130 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99936 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00401 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00482 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 119.99714 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47137 * 89.99966 * 23 21 19 25 25 H 1.48496 * 109.47111 * 210.00061 * 23 21 19 26 26 H 1.48496 * 109.47126 * 330.00044 * 23 21 19 27 27 H 1.08008 * 120.00132 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00577 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.00222 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47286 * 5.00604 * 3 2 1 31 31 H 1.08997 * 109.47350 * 244.99960 * 3 2 1 32 32 H 0.97001 * 119.99694 * 0.02562 * 4 3 2 33 33 H 1.09004 * 113.79402 * 41.43656 * 8 7 5 34 34 H 1.08996 * 113.79359 * 269.96069 * 8 7 5 35 35 H 1.08993 * 113.78437 * 90.03898 * 10 7 5 36 36 H 1.08998 * 113.79058 * 318.57950 * 10 7 5 37 37 H 1.08996 * 109.72519 * 154.14324 * 11 9 8 38 38 H 1.08996 * 109.70006 * 33.51672 * 11 9 8 39 39 H 1.09004 * 109.26498 * 171.56726 * 13 12 11 40 40 H 1.09002 * 109.27186 * 291.03856 * 13 12 11 41 41 H 1.09000 * 109.46616 * 210.00120 * 17 16 14 42 42 H 1.08999 * 109.47298 * 330.00132 * 17 16 14 43 43 H 1.09002 * 109.46916 * 299.99530 * 18 17 16 44 44 H 1.09004 * 109.47246 * 59.99411 * 18 17 16 45 45 H 0.96994 * 120.00015 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 7 2.9937 1.3319 1.1314 5 6 3.7782 2.4089 1.3335 6 16 3.6882 3.7456 0.2676 7 7 4.6344 2.4333 2.3741 8 6 5.6136 3.4134 2.8850 9 6 5.4293 2.7265 4.2453 10 6 4.9699 1.4902 3.4598 11 6 4.3278 3.3518 5.0996 12 8 4.8957 4.4434 5.8356 13 6 5.8725 4.0329 6.7933 14 6 6.9000 3.1449 6.1496 15 8 7.9650 2.9799 6.7058 16 7 6.6757 2.5289 4.9778 17 6 7.7021 1.6421 4.4241 18 6 7.4719 0.2169 4.9307 19 6 8.5279 -0.6952 4.3617 20 1 9.2871 -0.2981 3.7041 21 6 8.5250 -2.0365 4.6805 22 7 9.4464 -2.8327 4.1835 23 14 7.2123 -2.7232 5.8184 24 1 6.0438 -3.1658 5.0160 25 1 7.7638 -3.8796 6.5693 26 1 6.7859 -1.6701 6.7746 27 1 -0.5401 -0.9354 -0.0004 28 1 -0.5401 0.9353 0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3585 2.1316 0.0897 31 1 2.6212 1.4026 -0.9313 32 1 3.0450 0.5744 1.7352 33 1 5.2581 4.4436 2.8609 34 1 6.6127 3.2966 2.4652 35 1 5.7779 0.8025 3.2105 36 1 4.1028 0.9913 3.8924 37 1 3.9323 2.6083 5.7916 38 1 3.5278 3.7187 4.4567 39 1 6.3653 4.9138 7.2047 40 1 5.3799 3.4880 7.5987 41 1 7.6442 1.6547 3.3357 42 1 8.6874 1.9852 4.7396 43 1 7.5297 0.2044 6.0191 44 1 6.4865 -0.1261 4.6152 45 1 9.4441 -3.7764 4.4075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275738917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:22 Heat of formation + Delta-G solvation = 13.723990 kcal Electronic energy + Delta-G solvation = -28104.411132 eV Core-core repulsion = 24250.849334 eV Total energy + Delta-G solvation = -3853.561798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.80281 -39.59305 -38.03072 -37.57983 -35.42398 -34.04360 -33.04995 -31.05949 -30.34160 -28.59578 -27.35459 -26.92992 -25.67974 -24.50743 -23.23844 -21.43264 -21.03092 -20.21636 -18.70161 -18.47018 -17.93240 -17.63623 -17.20231 -16.48685 -16.16814 -15.81285 -15.70297 -15.35347 -14.90257 -14.60476 -14.39637 -14.18048 -14.03737 -13.84314 -13.70303 -13.38671 -13.22231 -12.87598 -12.62918 -12.27244 -12.10128 -11.92349 -11.69506 -11.59579 -11.35814 -11.18576 -11.07502 -10.82166 -10.59900 -10.27715 -10.09496 -10.06324 -9.57258 -9.38321 -9.09517 -8.73398 -8.62594 -7.86942 -7.58813 -6.22886 -4.23369 1.29223 1.45560 1.82025 2.32470 2.48355 2.83530 3.06104 3.09995 3.22547 3.23821 3.32158 3.89546 3.99532 4.16688 4.25823 4.31802 4.33267 4.64883 4.79700 4.86655 4.91971 5.05242 5.06840 5.10098 5.15969 5.23951 5.28819 5.34945 5.39422 5.42464 5.51014 5.67153 6.05331 6.07620 6.08426 6.23538 6.27078 6.33758 6.45591 6.53109 6.89264 7.08496 7.15332 7.39878 7.55228 8.09403 8.30427 8.80376 9.37499 10.90076 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008268 B = 0.004373 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3385.787866 B = 6401.408046 C = 8575.565451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.184 4.184 3 C 0.155 3.845 4 N -0.683 5.683 5 C 0.598 3.402 6 S -0.657 6.657 7 N -0.603 5.603 8 C 0.127 3.873 9 C 0.105 3.895 10 C 0.075 3.925 11 C 0.075 3.925 12 O -0.362 6.362 13 C 0.046 3.954 14 C 0.486 3.514 15 O -0.523 6.523 16 N -0.588 5.588 17 C 0.117 3.883 18 C -0.022 4.022 19 C -0.525 4.525 20 H 0.075 0.925 21 C 0.073 3.927 22 N -0.895 5.895 23 Si 0.877 3.123 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.266 1.266 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.399 0.601 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.130 0.870 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.118 0.882 39 H 0.132 0.868 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.024 0.976 44 H 0.010 0.990 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.210 8.141 -0.971 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.203 4.203 3 C 0.032 3.968 4 N -0.313 5.313 5 C 0.240 3.760 6 S -0.529 6.529 7 N -0.316 5.316 8 C 0.004 3.996 9 C 0.016 3.984 10 C -0.051 4.051 11 C -0.002 4.002 12 O -0.280 6.280 13 C -0.034 4.034 14 C 0.273 3.727 15 O -0.399 6.399 16 N -0.321 5.321 17 C -0.003 4.003 18 C -0.060 4.060 19 C -0.563 4.563 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.533 5.533 23 Si 0.704 3.296 24 H -0.204 1.204 25 H -0.211 1.211 26 H -0.191 1.191 27 H 0.123 0.877 28 H 0.121 0.879 29 H 0.135 0.865 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.235 0.765 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.148 0.852 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.136 0.864 39 H 0.150 0.850 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.042 0.958 44 H 0.028 0.972 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.815 8.912 -1.561 19.981 hybrid contribution -0.443 -2.177 1.266 2.557 sum -18.258 6.735 -0.295 19.462 Atomic orbital electron populations 1.24019 0.95656 1.02635 0.97236 1.23043 0.96379 0.98070 1.02762 1.20761 0.91302 0.96054 0.88659 1.44957 1.38949 1.16669 1.30703 1.21659 0.80459 0.89873 0.83977 1.93496 1.85181 1.28041 1.46152 1.48856 1.36302 1.21961 1.24434 1.23852 0.92500 0.95247 0.88026 1.22516 0.87302 0.96289 0.92339 1.24364 1.02317 0.94437 0.84016 1.22721 0.93281 0.90027 0.94197 1.88191 1.55979 1.31057 1.52727 1.22877 0.88551 1.00309 0.91653 1.21016 0.89256 0.81065 0.81338 1.90790 1.25374 1.62663 1.61047 1.47759 1.16728 1.46419 1.21219 1.21833 0.90619 0.90336 0.97529 1.19955 0.97016 0.91438 0.97588 1.20911 1.12838 0.92418 1.30163 0.90677 1.24966 0.95566 0.96969 0.95454 1.69892 1.33944 1.05155 1.44350 0.86834 0.82127 0.79001 0.81660 1.20386 1.21067 1.19087 0.87690 0.87900 0.86524 0.89180 0.88705 0.76461 0.87217 0.87569 0.85239 0.88771 0.90903 0.86366 0.84985 0.89278 0.91029 0.89203 0.95818 0.97214 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 14.32 29.02 0.42 -0.47 16 2 C -0.18 -1.21 9.63 -36.03 -0.35 -1.56 16 3 C 0.16 1.33 5.57 -5.19 -0.03 1.30 16 4 N -0.68 -6.43 5.55 -63.21 -0.35 -6.78 16 5 C 0.60 7.32 8.09 -86.92 -0.70 6.61 16 6 S -0.66 -10.62 29.02 -107.50 -3.12 -13.74 16 7 N -0.60 -6.66 3.49 -182.48 -0.64 -7.29 16 8 C 0.13 1.43 7.55 -3.15 -0.02 1.40 16 9 C 0.10 1.14 1.50 -135.75 -0.20 0.94 16 10 C 0.07 0.78 6.63 -3.15 -0.02 0.76 16 11 C 0.08 0.68 5.99 37.04 0.22 0.90 16 12 O -0.36 -3.76 10.84 -35.23 -0.38 -4.14 16 13 C 0.05 0.48 6.94 35.80 0.25 0.73 16 14 C 0.49 7.29 7.64 -11.41 -0.09 7.20 16 15 O -0.52 -10.09 16.45 5.56 0.09 -10.00 16 16 N -0.59 -8.41 2.66 -162.63 -0.43 -8.85 16 17 C 0.12 2.06 4.43 -4.04 -0.02 2.04 16 18 C -0.02 -0.46 4.00 -27.89 -0.11 -0.58 16 19 C -0.52 -13.78 9.66 -34.44 -0.33 -14.12 16 20 H 0.08 2.14 7.99 -52.48 -0.42 1.72 16 21 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 22 N -0.90 -26.27 13.96 55.43 0.77 -25.50 16 23 Si 0.88 20.22 27.47 -169.99 -4.67 15.55 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 27 H 0.10 0.48 8.06 -52.48 -0.42 0.05 16 28 H 0.10 0.53 7.84 -52.48 -0.41 0.12 16 29 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 30 H 0.09 0.82 7.64 -51.93 -0.40 0.42 16 31 H 0.09 0.94 7.99 -51.93 -0.42 0.52 16 32 H 0.40 3.07 8.07 -40.82 -0.33 2.74 16 33 H 0.11 1.23 8.09 -51.93 -0.42 0.81 16 34 H 0.11 1.26 7.22 -51.93 -0.38 0.89 16 35 H 0.13 1.67 5.01 -51.93 -0.26 1.41 16 36 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 37 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 38 H 0.12 0.95 7.97 -51.93 -0.41 0.54 16 39 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.17 6.31 -51.93 -0.33 0.84 16 42 H 0.09 1.79 7.30 -51.93 -0.38 1.41 16 43 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 44 H 0.01 0.19 5.45 -51.93 -0.28 -0.09 16 45 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 378.63 15.07 5.71 5.71 Total: -1.00 -34.51 378.63 -10.61 -45.13 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.50 Total: 2.86 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -1.09 Total: 7.06 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.65 Total: -48.42 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.29 Total: -14.14 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.67 Total: 15.55 kcal Atomic # 16 Polarization: -10.62 SS G_CDS: -3.12 Total: -13.74 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.51 -10.61 -45.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275738917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.851 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds