Wall clock time and date at job start Tue Mar 31 2020 22:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47410 * 2 1 4 4 C 1.50696 * 109.47552 * 179.97438 * 3 2 1 5 5 N 1.34664 * 125.79840 * 265.13767 * 4 3 2 6 6 H 0.96992 * 124.85600 * 0.05428 * 5 4 3 7 7 C 1.36448 * 110.29566 * 180.29276 * 5 4 3 8 8 C 1.34493 * 108.85812 * 359.74434 * 7 5 4 9 9 C 1.36768 * 125.80410 * 84.99620 * 4 3 2 10 10 C 1.47263 * 126.93909 * 359.97438 * 9 4 3 11 11 O 1.21623 * 120.00126 * 359.70796 * 10 9 4 12 12 N 1.34777 * 119.99630 * 179.70482 * 10 9 4 13 13 C 1.46499 * 119.99665 * 179.72408 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 N 1.46499 * 109.47198 * 179.97438 * 14 13 12 16 16 C 1.34777 * 120.00065 * 180.02562 * 15 14 13 17 17 O 1.21283 * 119.99650 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00075 * 180.02562 * 16 15 14 19 19 S 1.81004 * 109.46908 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99819 * 180.02562 * 19 18 16 21 21 H 1.08007 * 119.99752 * 359.97438 * 20 19 18 22 22 C 1.38793 * 119.99846 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00284 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99825 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46892 * 60.00283 * 24 22 20 26 26 H 1.48505 * 109.47235 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47504 * 299.99978 * 24 22 20 28 28 H 1.08996 * 109.47248 * 300.00170 * 1 2 3 29 29 H 1.09007 * 109.47013 * 59.99687 * 1 2 3 30 30 H 1.08998 * 109.47351 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47248 * 239.99830 * 2 1 3 32 32 H 1.09001 * 109.47107 * 119.99854 * 2 1 3 33 33 H 1.09010 * 109.47329 * 59.99674 * 3 2 1 34 34 H 1.09007 * 109.47288 * 300.00144 * 3 2 1 35 35 H 1.08002 * 125.57355 * 179.72678 * 7 5 4 36 36 H 1.07994 * 126.83369 * 180.02562 * 8 7 5 37 37 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 38 38 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 39 39 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 40 40 H 1.08995 * 109.46638 * 300.00121 * 14 13 12 41 41 H 1.09006 * 109.47139 * 60.00254 * 14 13 12 42 42 H 0.97000 * 120.00386 * 359.97438 * 15 14 13 43 43 H 1.08994 * 109.46850 * 299.99690 * 18 16 15 44 44 H 1.08998 * 109.47115 * 59.99614 * 18 16 15 45 45 H 0.97003 * 120.00379 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3343 1.5352 1.0893 6 1 4.0126 1.6122 2.0010 7 6 5.6492 1.5108 0.7259 8 6 5.7285 1.3955 -0.6118 9 6 4.3476 1.3456 -1.1040 10 6 3.9113 1.2222 -2.5051 11 8 2.7252 1.1929 -2.7724 12 7 4.8266 1.1418 -3.4912 13 6 4.3926 1.0129 -4.8845 14 6 5.6193 0.9350 -5.7956 15 7 5.1853 0.8055 -7.1889 16 6 6.1005 0.7188 -8.1745 17 8 7.2833 0.7476 -7.9079 18 6 5.6541 0.5862 -9.6077 19 16 7.1054 0.4939 -10.6855 20 6 6.3136 0.3484 -12.2529 21 1 5.2354 0.3382 -12.3143 22 6 7.0756 0.2458 -13.4084 23 7 8.3897 0.2577 -13.3335 24 14 6.2362 0.0908 -15.0700 25 1 5.3839 1.2836 -15.3071 26 1 7.2646 -0.0021 -16.1374 27 1 5.3931 -1.1314 -15.0867 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 6.4892 1.5741 1.4019 36 1 6.6296 1.3486 -1.2052 37 1 5.7726 1.1648 -3.2781 38 1 3.7979 0.1064 -4.9976 39 1 3.7905 1.8790 -5.1592 40 1 6.2139 1.8414 -5.6826 41 1 6.2214 0.0688 -5.5211 42 1 4.2394 0.7814 -7.4020 43 1 5.0591 -0.3200 -9.7205 44 1 5.0524 1.4526 -9.8825 45 1 8.9223 0.1856 -14.1410 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292517149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:13 Heat of formation + Delta-G solvation = -49.129138 kcal Electronic energy + Delta-G solvation = -25212.135200 eV Core-core repulsion = 21355.847886 eV Total energy + Delta-G solvation = -3856.287314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.68217 -39.50216 -38.96760 -35.91785 -35.23688 -33.83073 -32.41674 -31.61007 -30.34106 -30.07978 -28.00092 -26.35610 -25.46612 -23.61119 -22.30029 -21.86850 -21.04187 -20.42425 -19.76419 -18.12070 -17.85382 -16.55788 -16.41776 -16.04116 -15.74937 -15.44705 -15.29137 -15.20439 -14.78913 -14.64776 -14.43068 -13.95971 -13.81181 -13.69779 -13.59262 -13.24982 -13.15054 -13.01004 -12.54912 -12.31540 -12.18995 -11.93611 -11.67941 -11.60966 -11.57246 -11.03366 -11.02385 -11.00108 -10.76019 -10.09374 -9.81565 -9.44892 -9.38090 -9.16229 -9.05409 -8.94161 -8.57252 -8.23408 -6.49035 -6.20277 -3.91027 1.42074 2.04124 2.58661 2.88991 3.07655 3.21465 3.25063 3.29734 3.32811 3.41120 3.84829 4.21819 4.29021 4.48135 4.55112 4.62115 4.72488 4.86604 4.91996 4.94376 5.06311 5.14879 5.16300 5.19735 5.29168 5.40231 5.45845 5.50296 5.58706 5.64089 5.72078 5.76882 5.84201 5.90698 5.92678 5.96560 6.15245 6.20878 6.35776 6.52765 6.55224 7.00285 7.36349 7.60645 7.66120 8.13213 8.36408 8.57869 9.24973 10.87083 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025308 B = 0.001548 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.110278 B =18078.106454 C =19048.917796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.059 4.059 4 C 0.111 3.889 5 N -0.552 5.552 6 H 0.416 0.584 7 C -0.016 4.016 8 C -0.168 4.168 9 C -0.235 4.235 10 C 0.593 3.407 11 O -0.547 6.547 12 N -0.724 5.724 13 C 0.112 3.888 14 C 0.111 3.889 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.517 6.517 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.170 0.830 36 H 0.146 0.854 37 H 0.403 0.597 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.401 0.599 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.016 2.282 32.888 35.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.097 4.097 4 C -0.007 4.007 5 N -0.147 5.147 6 H 0.252 0.748 7 C -0.143 4.143 8 C -0.192 4.192 9 C -0.245 4.245 10 C 0.382 3.618 11 O -0.426 6.426 12 N -0.376 5.376 13 C -0.012 4.012 14 C -0.014 4.014 15 N -0.392 5.392 16 C 0.320 3.680 17 O -0.391 6.391 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.187 0.813 36 H 0.164 0.836 37 H 0.237 0.763 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.235 0.765 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.695 2.314 33.153 34.912 hybrid contribution -1.767 -0.084 -0.897 1.984 sum -12.463 2.229 32.256 34.652 Atomic orbital electron populations 1.21746 0.95312 1.01821 1.01906 1.21404 0.96023 0.95318 1.02273 1.20414 0.86542 0.98742 1.04027 1.20349 0.93452 1.01191 0.85717 1.41621 1.06294 1.58029 1.08781 0.74780 1.21750 0.85634 1.10345 0.96617 1.22074 0.95795 1.07456 0.93872 1.20073 0.93271 1.19085 0.92101 1.17300 0.85170 0.75417 0.83924 1.90754 1.16509 1.51168 1.84181 1.45551 1.10158 1.75901 1.05986 1.21404 0.96496 1.02972 0.80349 1.21327 0.95903 1.02910 0.81274 1.45806 1.10155 1.77603 1.05617 1.20316 0.85843 0.75111 0.86718 1.90706 1.16809 1.47724 1.83816 1.23531 1.07181 1.05005 0.94687 1.85386 1.03703 1.95933 0.98314 1.22834 0.95072 1.58510 0.92044 0.90927 1.24985 0.94848 0.94555 0.99153 1.70004 1.04178 1.46652 1.29475 0.86224 0.78923 0.78834 0.81515 1.19938 1.20820 1.19936 0.93037 0.92125 0.92615 0.90925 0.92773 0.91531 0.87743 0.81290 0.83590 0.76272 0.90765 0.90752 0.90967 0.90982 0.76499 0.89073 0.89070 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.11 -0.81 5.92 -26.73 -0.16 -0.97 16 3 C -0.06 -0.42 5.06 -27.89 -0.14 -0.56 16 4 C 0.11 0.88 6.43 -81.88 -0.53 0.35 16 5 N -0.55 -2.86 5.90 -9.10 -0.05 -2.91 16 6 H 0.42 0.87 8.96 -40.82 -0.37 0.51 16 7 C -0.02 -0.09 11.89 -16.82 -0.20 -0.29 16 8 C -0.17 -1.21 10.56 -37.49 -0.40 -1.61 16 9 C -0.24 -2.21 6.29 -103.35 -0.65 -2.86 16 10 C 0.59 6.58 7.81 -12.59 -0.10 6.48 16 11 O -0.55 -7.43 14.74 5.26 0.08 -7.35 16 12 N -0.72 -6.68 5.55 -61.43 -0.34 -7.02 16 13 C 0.11 1.07 5.79 -4.04 -0.02 1.04 16 14 C 0.11 1.22 5.79 -4.04 -0.02 1.20 16 15 N -0.74 -9.57 5.56 -60.29 -0.33 -9.90 16 16 C 0.53 9.83 7.85 -10.98 -0.09 9.74 16 17 O -0.52 -11.58 15.86 5.55 0.09 -11.49 16 18 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 21 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.11 5.49 -17.44 -0.10 2.02 16 23 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 24 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.69 7.95 -51.93 -0.41 0.28 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 34 H 0.10 0.96 6.76 -51.93 -0.35 0.61 16 35 H 0.17 0.41 8.06 -52.49 -0.42 -0.02 16 36 H 0.15 0.79 7.69 -52.49 -0.40 0.39 16 37 H 0.40 2.93 7.60 -40.82 -0.31 2.62 16 38 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.40 4.07 8.47 -40.82 -0.35 3.73 16 43 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 397.89 15.07 6.00 6.00 Total: -1.00 -37.42 397.89 -9.39 -46.81 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.81 Total: 2.62 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -1.52 Total: -3.88 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.00 Total: -45.29 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.17 Total: -18.84 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.42 -9.39 -46.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292517149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.318 kcal (2) G-P(sol) polarization free energy of solvation -37.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds