Wall clock time and date at job start Wed Apr 1 2020 00:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34658 * 120.00194 * 2 1 4 4 C 1.46661 * 120.00149 * 185.06615 * 3 2 1 5 5 O 1.21676 * 119.99611 * 354.74590 * 4 3 2 6 6 N 1.34771 * 120.00266 * 174.75247 * 4 3 2 7 7 C 1.46500 * 120.00171 * 179.97438 * 6 4 3 8 8 C 1.50694 * 109.47571 * 179.97438 * 7 6 4 9 9 C 1.38302 * 119.92992 * 269.72785 * 8 7 6 10 10 C 1.38102 * 120.07131 * 179.72017 * 9 8 7 11 11 C 1.38876 * 119.92648 * 0.57103 * 10 9 8 12 12 O 1.35756 * 120.06965 * 179.68032 * 11 10 9 13 13 C 1.34833 * 116.99990 * 174.42468 * 12 11 10 14 14 H 1.07997 * 120.00226 * 5.06228 * 13 12 11 15 15 C 1.38651 * 119.99562 * 185.06410 * 13 12 11 16 16 N 1.31561 * 120.00479 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99836 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47367 * 89.99829 * 17 15 13 19 19 H 1.48500 * 109.47435 * 210.00118 * 17 15 13 20 20 H 1.48500 * 109.47034 * 329.99892 * 17 15 13 21 21 C 1.38878 * 119.86591 * 359.69910 * 11 10 9 22 22 C 1.38106 * 119.93011 * 0.02562 * 21 11 10 23 23 C 1.47362 * 119.99827 * 179.97438 * 2 1 3 24 24 C 1.39822 * 120.13570 * 274.78261 * 23 2 1 25 25 N 1.31979 * 119.83940 * 179.97438 * 24 23 2 26 26 C 1.32205 * 120.10177 * 359.97438 * 25 24 23 27 27 C 1.38661 * 120.27075 * 359.97438 * 26 25 24 28 28 N 1.31848 * 120.16546 * 359.74766 * 27 26 25 29 29 H 1.09003 * 109.46804 * 89.99917 * 1 2 3 30 30 H 1.08994 * 109.47604 * 210.00249 * 1 2 3 31 31 H 1.09004 * 109.46631 * 330.00760 * 1 2 3 32 32 H 1.08002 * 120.00022 * 5.05771 * 3 2 1 33 33 H 0.96997 * 120.00174 * 359.97438 * 6 4 3 34 34 H 1.09000 * 109.46722 * 299.99783 * 7 6 4 35 35 H 1.09003 * 109.47359 * 59.99136 * 7 6 4 36 36 H 1.08004 * 119.96610 * 359.97438 * 9 8 7 37 37 H 1.07994 * 120.04043 * 180.27131 * 10 9 8 38 38 H 0.96996 * 120.00092 * 180.02562 * 16 15 13 39 39 H 1.07994 * 120.03913 * 179.97438 * 21 11 10 40 40 H 1.07996 * 119.96422 * 179.97438 * 22 21 11 41 41 H 1.08004 * 120.07975 * 359.95146 * 24 23 2 42 42 H 1.08000 * 119.86596 * 180.02562 * 26 25 24 43 43 H 1.07998 * 119.91348 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1803 1.1661 0.0000 4 6 3.6426 1.1686 -0.1122 5 8 4.2547 0.1170 -0.1089 6 7 4.3084 2.3356 -0.2187 7 6 5.7691 2.3380 -0.3302 8 6 6.2625 3.7579 -0.4363 9 6 6.4028 4.3486 -1.6789 10 6 6.8492 5.6517 -1.7793 11 6 7.1687 6.3650 -0.6314 12 8 7.6139 7.6438 -0.7270 13 6 7.7956 8.3167 0.4272 14 1 7.6673 7.8113 1.3729 15 6 8.1470 9.6577 0.3999 16 7 8.3028 10.2736 -0.7521 17 14 8.3994 10.5898 1.9989 18 1 9.8205 10.4817 2.4160 19 1 8.0494 12.0191 1.7993 20 1 7.5287 10.0096 3.0528 21 6 7.0321 5.7672 0.6147 22 6 6.5797 4.4657 0.7088 23 6 2.2438 -1.2762 0.0006 24 6 2.5074 -1.9340 1.2059 25 7 3.1673 -3.0770 1.1996 26 6 3.5778 -3.5993 0.0565 27 6 3.3178 -2.9512 -1.1414 28 7 2.6547 -1.8116 -1.1479 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5137 32 1 1.6435 2.0997 0.0825 33 1 3.8204 3.1738 -0.2216 34 1 6.2016 1.8678 0.5530 35 1 6.0666 1.7829 -1.2198 36 1 6.1591 3.7917 -2.5716 37 1 6.9544 6.1139 -2.7497 38 1 8.5491 11.2116 -0.7712 39 1 7.2801 6.3191 1.5092 40 1 6.4737 4.0002 1.6775 41 1 2.1722 -1.5077 2.1399 42 1 4.1171 -4.5350 0.0557 43 1 3.6555 -3.3833 -2.0718 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292737313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:58 Heat of formation + Delta-G solvation = 27.251690 kcal Electronic energy + Delta-G solvation = -27025.624153 eV Core-core repulsion = 23037.205009 eV Total energy + Delta-G solvation = -3988.419144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.16160 -39.72128 -39.04397 -36.96589 -35.76403 -34.37829 -34.05834 -32.40086 -31.02879 -30.33341 -30.12562 -28.30080 -25.93847 -25.14312 -24.65461 -24.40180 -22.08510 -21.43976 -20.66770 -19.61979 -18.11143 -17.79336 -17.61154 -17.03518 -16.99930 -16.23419 -15.33190 -15.21344 -14.97053 -14.65357 -14.55646 -14.40006 -13.98501 -13.78235 -13.67008 -13.63267 -13.44782 -13.29561 -12.82238 -12.77320 -12.72948 -12.24552 -12.12348 -11.71131 -11.70543 -11.43018 -11.29071 -10.99510 -10.83021 -10.71811 -10.51153 -10.16152 -9.76018 -9.45430 -9.18868 -9.14463 -8.93204 -8.91412 -8.31571 -7.35722 -6.55167 -4.14191 0.62113 0.86572 1.08274 2.03986 2.10106 3.06111 3.07704 3.12585 3.16968 3.38591 3.54071 3.74016 3.88412 4.13047 4.39036 4.43298 4.50753 4.64049 4.93180 4.94672 4.99488 5.05437 5.11556 5.14817 5.20876 5.21242 5.29235 5.38927 5.43986 5.63182 5.75296 5.77278 5.86473 5.97965 6.09590 6.22080 6.31901 6.47348 6.57266 6.77473 6.92940 7.11363 7.14203 7.24269 7.32437 7.57141 7.64212 7.68925 7.89394 8.21520 8.90062 9.57963 10.62253 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023558 B = 0.001840 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.266382 B =15213.854573 C =15399.854248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.002 4.002 3 C -0.183 4.183 4 C 0.537 3.463 5 O -0.543 6.543 6 N -0.714 5.714 7 C 0.181 3.819 8 C -0.216 4.216 9 C -0.054 4.054 10 C -0.195 4.195 11 C 0.161 3.839 12 O -0.173 6.173 13 C -0.394 4.394 14 H 0.093 0.907 15 C 0.040 3.960 16 N -0.859 5.859 17 Si 0.942 3.058 18 H -0.272 1.272 19 H -0.277 1.277 20 H -0.267 1.267 21 C -0.237 4.237 22 C -0.050 4.050 23 C 0.141 3.859 24 C 0.066 3.934 25 N -0.434 5.434 26 C 0.038 3.962 27 C 0.062 3.938 28 N -0.420 5.420 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.403 0.597 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.272 0.728 39 H 0.128 0.872 40 H 0.108 0.892 41 H 0.163 0.837 42 H 0.165 0.835 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.610 -20.698 2.005 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.006 4.006 3 C -0.205 4.205 4 C 0.325 3.675 5 O -0.422 6.422 6 N -0.364 5.364 7 C 0.059 3.941 8 C -0.217 4.217 9 C -0.073 4.073 10 C -0.214 4.214 11 C 0.106 3.894 12 O -0.075 6.075 13 C -0.470 4.470 14 H 0.111 0.889 15 C -0.165 4.165 16 N -0.493 5.493 17 Si 0.767 3.233 18 H -0.198 1.198 19 H -0.202 1.202 20 H -0.191 1.191 21 C -0.256 4.256 22 C -0.069 4.069 23 C 0.001 3.999 24 C -0.094 4.094 25 N -0.148 5.148 26 C -0.122 4.122 27 C -0.099 4.099 28 N -0.135 5.135 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.159 0.841 33 H 0.237 0.763 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.130 0.870 37 H 0.137 0.863 38 H 0.081 0.919 39 H 0.146 0.854 40 H 0.126 0.874 41 H 0.180 0.820 42 H 0.183 0.817 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -13.997 -21.055 1.724 25.341 hybrid contribution 0.181 1.046 0.770 1.312 sum -13.816 -20.008 2.495 24.443 Atomic orbital electron populations 1.20912 0.89084 1.03680 1.03575 1.20693 0.95562 0.90153 0.94181 1.23025 0.93834 0.98312 1.05313 1.18425 0.87938 0.84023 0.77076 1.90785 1.69515 1.31128 1.50767 1.46213 1.08378 1.08341 1.73460 1.19954 0.78563 0.94064 1.01517 1.19198 1.12865 0.95854 0.93778 1.20532 0.96927 0.93679 0.96134 1.20217 1.09158 0.94999 0.97057 1.19440 0.90640 0.86152 0.93193 1.83981 1.70728 1.19055 1.33770 1.21355 1.48970 0.92724 0.83918 0.88916 1.25326 0.96427 0.95676 0.99061 1.70035 1.43040 1.11479 1.24745 0.85690 0.79054 0.78725 0.79852 1.19785 1.20168 1.19133 1.21158 1.10112 0.96319 0.98018 1.20637 0.95949 0.93534 0.96805 1.20578 0.94422 0.94223 0.90640 1.23538 0.95825 0.91933 0.98133 1.68344 1.06897 1.10260 1.29327 1.23721 0.98423 1.00933 0.89083 1.23643 0.95067 0.91588 0.99602 1.68543 1.07417 1.09197 1.28352 0.89636 0.91028 0.90049 0.84143 0.76252 0.91683 0.91641 0.86990 0.86349 0.91857 0.85399 0.87437 0.82004 0.81744 0.81665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.04 36.00 0.36 -0.28 16 2 C 0.00 -0.02 5.67 -102.18 -0.58 -0.60 16 3 C -0.18 -1.74 9.69 -37.45 -0.36 -2.11 16 4 C 0.54 7.01 7.71 -12.86 -0.10 6.91 16 5 O -0.54 -8.83 13.59 5.21 0.07 -8.76 16 6 N -0.71 -8.87 5.54 -62.81 -0.35 -9.22 16 7 C 0.18 2.57 5.80 -5.20 -0.03 2.54 16 8 C -0.22 -3.45 5.25 -104.58 -0.55 -4.00 16 9 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 10 C -0.19 -3.91 9.99 -39.39 -0.39 -4.31 16 11 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 12 O -0.17 -4.77 9.76 0.02 0.00 -4.77 16 13 C -0.39 -10.64 9.49 30.88 0.29 -10.35 16 14 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 15 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 16 N -0.86 -24.53 13.67 55.48 0.76 -23.77 16 17 Si 0.94 19.91 29.55 -169.99 -5.02 14.88 16 18 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 C -0.24 -4.87 9.17 -39.39 -0.36 -5.23 16 22 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 23 C 0.14 1.62 3.67 -82.96 -0.30 1.31 16 24 C 0.07 0.74 10.80 -16.90 -0.18 0.56 16 25 N -0.43 -5.14 10.49 -12.63 -0.13 -5.27 16 26 C 0.04 0.37 11.22 -17.23 -0.19 0.18 16 27 C 0.06 0.63 11.22 -17.39 -0.20 0.44 16 28 N -0.42 -5.26 9.86 -9.72 -0.10 -5.35 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 31 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 32 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 33 H 0.40 4.35 8.44 -40.82 -0.34 4.01 16 34 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 35 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 37 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 38 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 40 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.16 1.41 8.06 -52.48 -0.42 0.99 16 42 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -34.12 379.53 -7.88 -42.00 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.11 Total: 7.60 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -3.72 Total: -13.06 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.18 Total: -43.62 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.07 Total: -13.52 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.12 -7.88 -42.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292737313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.251 kcal (2) G-P(sol) polarization free energy of solvation -34.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds