Wall clock time and date at job start Wed Apr 1 2020 00:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34658 * 120.00194 * 2 1 4 4 C 1.46661 * 120.00149 * 185.06615 * 3 2 1 5 5 O 1.21676 * 119.99611 * 354.74590 * 4 3 2 6 6 N 1.34771 * 120.00266 * 174.75247 * 4 3 2 7 7 C 1.46500 * 120.00171 * 179.97438 * 6 4 3 8 8 C 1.50694 * 109.47571 * 179.97438 * 7 6 4 9 9 C 1.38302 * 119.92992 * 269.72785 * 8 7 6 10 10 C 1.38102 * 120.07131 * 179.72017 * 9 8 7 11 11 C 1.38876 * 119.92648 * 0.57103 * 10 9 8 12 12 O 1.35756 * 120.06965 * 179.68032 * 11 10 9 13 13 C 1.34833 * 116.99990 * 174.42468 * 12 11 10 14 14 H 1.07997 * 120.00226 * 5.06228 * 13 12 11 15 15 C 1.38651 * 119.99562 * 185.06410 * 13 12 11 16 16 N 1.31561 * 120.00479 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99836 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47367 * 89.99829 * 17 15 13 19 19 H 1.48500 * 109.47435 * 210.00118 * 17 15 13 20 20 H 1.48500 * 109.47034 * 329.99892 * 17 15 13 21 21 C 1.38878 * 119.86591 * 359.69910 * 11 10 9 22 22 C 1.38106 * 119.93011 * 0.02562 * 21 11 10 23 23 C 1.47362 * 119.99827 * 179.97438 * 2 1 3 24 24 C 1.39822 * 120.13570 * 274.78261 * 23 2 1 25 25 N 1.31979 * 119.83940 * 179.97438 * 24 23 2 26 26 C 1.32205 * 120.10177 * 359.97438 * 25 24 23 27 27 C 1.38661 * 120.27075 * 359.97438 * 26 25 24 28 28 N 1.31848 * 120.16546 * 359.74766 * 27 26 25 29 29 H 1.09003 * 109.46804 * 89.99917 * 1 2 3 30 30 H 1.08994 * 109.47604 * 210.00249 * 1 2 3 31 31 H 1.09004 * 109.46631 * 330.00760 * 1 2 3 32 32 H 1.08002 * 120.00022 * 5.05771 * 3 2 1 33 33 H 0.96997 * 120.00174 * 359.97438 * 6 4 3 34 34 H 1.09000 * 109.46722 * 299.99783 * 7 6 4 35 35 H 1.09003 * 109.47359 * 59.99136 * 7 6 4 36 36 H 1.08004 * 119.96610 * 359.97438 * 9 8 7 37 37 H 1.07994 * 120.04043 * 180.27131 * 10 9 8 38 38 H 0.96996 * 120.00092 * 180.02562 * 16 15 13 39 39 H 1.07994 * 120.03913 * 179.97438 * 21 11 10 40 40 H 1.07996 * 119.96422 * 179.97438 * 22 21 11 41 41 H 1.08004 * 120.07975 * 359.95146 * 24 23 2 42 42 H 1.08000 * 119.86596 * 180.02562 * 26 25 24 43 43 H 1.07998 * 119.91348 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1803 1.1661 0.0000 4 6 3.6426 1.1686 -0.1122 5 8 4.2547 0.1170 -0.1089 6 7 4.3084 2.3356 -0.2187 7 6 5.7691 2.3380 -0.3302 8 6 6.2625 3.7579 -0.4363 9 6 6.4028 4.3486 -1.6789 10 6 6.8492 5.6517 -1.7793 11 6 7.1687 6.3650 -0.6314 12 8 7.6139 7.6438 -0.7270 13 6 7.7956 8.3167 0.4272 14 1 7.6673 7.8113 1.3729 15 6 8.1470 9.6577 0.3999 16 7 8.3028 10.2736 -0.7521 17 14 8.3994 10.5898 1.9989 18 1 9.8205 10.4817 2.4160 19 1 8.0494 12.0191 1.7993 20 1 7.5287 10.0096 3.0528 21 6 7.0321 5.7672 0.6147 22 6 6.5797 4.4657 0.7088 23 6 2.2438 -1.2762 0.0006 24 6 2.5074 -1.9340 1.2059 25 7 3.1673 -3.0770 1.1996 26 6 3.5778 -3.5993 0.0565 27 6 3.3178 -2.9512 -1.1414 28 7 2.6547 -1.8116 -1.1479 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5137 32 1 1.6435 2.0997 0.0825 33 1 3.8204 3.1738 -0.2216 34 1 6.2016 1.8678 0.5530 35 1 6.0666 1.7829 -1.2198 36 1 6.1591 3.7917 -2.5716 37 1 6.9544 6.1139 -2.7497 38 1 8.5491 11.2116 -0.7712 39 1 7.2801 6.3191 1.5092 40 1 6.4737 4.0002 1.6775 41 1 2.1722 -1.5077 2.1399 42 1 4.1171 -4.5350 0.0557 43 1 3.6555 -3.3833 -2.0718 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292737313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:42 Heat of formation + Delta-G solvation = 3.704266 kcal Electronic energy + Delta-G solvation = -27026.645246 eV Core-core repulsion = 23037.205009 eV Total energy + Delta-G solvation = -3989.440237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 19.44 seconds Orbital eigenvalues (eV) -41.94295 -40.99251 -40.44272 -38.54710 -36.55788 -35.56239 -34.84174 -34.28547 -31.97459 -31.82567 -31.32720 -29.09576 -27.61004 -26.31777 -25.60997 -25.28241 -23.67163 -22.52154 -22.02084 -20.45676 -19.88296 -18.96676 -18.54003 -18.40664 -17.75799 -17.22814 -16.63357 -16.43226 -16.14272 -15.90589 -15.77962 -15.63147 -15.53830 -15.15892 -14.83218 -14.44778 -14.33911 -14.27948 -14.04676 -14.01462 -13.67234 -13.37595 -13.31455 -13.04386 -12.77606 -12.57574 -12.52813 -12.39144 -12.26347 -12.12947 -12.11816 -11.22059 -11.15625 -10.81053 -10.48462 -10.10210 -9.96776 -9.84501 -9.79038 -9.03291 -8.49054 -6.17457 -0.13232 0.11923 0.28862 0.52118 0.55085 1.35693 1.43905 1.52767 2.16430 2.23539 2.34079 2.77582 2.84857 3.07221 3.16127 3.43018 3.46375 3.67198 3.76824 3.84413 3.92368 3.99565 4.14761 4.29856 4.34730 4.40883 4.42962 4.54013 4.54790 4.59519 4.69013 4.77588 4.80290 4.98618 5.01397 5.12755 5.18277 5.23794 5.35846 5.43037 5.50065 5.51867 5.66944 5.72197 6.00233 6.13043 6.37342 6.60594 6.86752 6.95599 7.24881 7.74325 8.73602 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023558 B = 0.001840 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.266382 B =15213.854573 C =15399.854248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.005 3.995 3 C -0.193 4.193 4 C 0.533 3.467 5 O -0.578 6.578 6 N -0.709 5.709 7 C 0.189 3.811 8 C -0.182 4.182 9 C -0.044 4.044 10 C -0.204 4.204 11 C 0.123 3.877 12 O -0.228 6.228 13 C -0.414 4.414 14 H 0.104 0.896 15 C -0.022 4.022 16 N -0.918 5.918 17 Si 1.018 2.982 18 H -0.265 1.265 19 H -0.272 1.272 20 H -0.252 1.252 21 C -0.242 4.242 22 C -0.045 4.045 23 C 0.126 3.874 24 C 0.052 3.948 25 N -0.458 5.458 26 C 0.033 3.967 27 C 0.053 3.947 28 N -0.449 5.449 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.175 0.825 33 H 0.413 0.587 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.145 0.855 37 H 0.116 0.884 38 H 0.273 0.727 39 H 0.121 0.879 40 H 0.138 0.862 41 H 0.178 0.822 42 H 0.195 0.805 43 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.448 -22.867 3.215 28.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.001 3.999 3 C -0.215 4.215 4 C 0.323 3.677 5 O -0.460 6.460 6 N -0.360 5.360 7 C 0.066 3.934 8 C -0.184 4.184 9 C -0.062 4.062 10 C -0.223 4.223 11 C 0.072 3.928 12 O -0.134 6.134 13 C -0.490 4.490 14 H 0.121 0.879 15 C -0.220 4.220 16 N -0.556 5.556 17 Si 0.837 3.163 18 H -0.190 1.190 19 H -0.196 1.196 20 H -0.175 1.175 21 C -0.262 4.262 22 C -0.063 4.063 23 C -0.013 4.013 24 C -0.108 4.108 25 N -0.173 5.173 26 C -0.126 4.126 27 C -0.107 4.107 28 N -0.165 5.165 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.124 0.876 32 H 0.192 0.808 33 H 0.249 0.751 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.162 0.838 37 H 0.134 0.866 38 H 0.082 0.918 39 H 0.139 0.861 40 H 0.156 0.844 41 H 0.195 0.805 42 H 0.212 0.788 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -15.876 -23.269 2.942 28.322 hybrid contribution 0.640 1.249 0.304 1.436 sum -15.236 -22.020 3.245 26.974 Atomic orbital electron populations 1.21002 0.86407 1.05195 1.04282 1.21094 0.97249 0.89062 0.92477 1.23101 0.91759 0.99933 1.06689 1.18978 0.89374 0.83275 0.76061 1.90776 1.70575 1.32308 1.52357 1.46027 1.07466 1.08966 1.73493 1.19782 0.79848 0.92048 1.01715 1.19466 1.09508 0.96355 0.93035 1.20852 0.95220 0.92316 0.97853 1.20440 1.09342 0.96212 0.96293 1.19983 0.92102 0.85476 0.95228 1.83952 1.73932 1.21182 1.34354 1.21831 1.49214 0.93431 0.84483 0.87876 1.26593 0.95980 0.96423 1.03005 1.70178 1.46008 1.11936 1.27469 0.84589 0.79383 0.77067 0.75217 1.18957 1.19649 1.17506 1.21242 1.10393 0.97655 0.96871 1.20918 0.94590 0.92112 0.98726 1.20964 0.94656 0.95158 0.90535 1.23844 0.95988 0.92053 0.98874 1.68359 1.07630 1.10873 1.30388 1.24239 0.97984 1.01818 0.88529 1.24153 0.94463 0.91155 1.00959 1.68550 1.08476 1.10318 1.29116 0.89078 0.90462 0.87630 0.80774 0.75083 0.91600 0.91598 0.83774 0.86635 0.91784 0.86081 0.84408 0.80481 0.78773 0.79051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.04 71.24 0.72 -0.17 16 2 C 0.00 0.07 5.67 -18.28 -0.10 -0.03 16 3 C -0.19 -3.10 9.69 23.65 0.23 -2.87 16 4 C 0.53 12.56 7.71 86.44 0.67 13.23 16 5 O -0.58 -17.82 13.59 -4.27 -0.06 -17.88 16 6 N -0.71 -15.35 5.54 -470.87 -2.61 -17.96 16 7 C 0.19 4.74 5.80 85.63 0.50 5.23 16 8 C -0.18 -5.30 5.25 -19.84 -0.10 -5.40 16 9 C -0.04 -1.38 9.69 22.25 0.22 -1.16 16 10 C -0.20 -8.18 9.99 22.39 0.22 -7.96 16 11 C 0.12 5.85 6.65 22.58 0.15 6.00 16 12 O -0.23 -13.30 9.76 -22.83 -0.22 -13.52 16 13 C -0.41 -23.35 9.49 67.92 0.64 -22.71 16 14 H 0.10 5.31 5.20 -2.91 -0.02 5.29 16 15 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 16 N -0.92 -55.22 13.67 21.61 0.30 -54.92 16 17 Si 1.02 41.69 29.55 68.60 2.03 43.72 16 18 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 19 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 20 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 21 C -0.24 -9.93 9.17 22.39 0.21 -9.72 16 22 C -0.04 -1.44 9.69 22.25 0.22 -1.22 16 23 C 0.13 2.70 3.67 41.72 0.15 2.86 16 24 C 0.05 1.11 10.80 85.05 0.92 2.03 16 25 N -0.46 -10.35 10.49 -193.89 -2.03 -12.38 16 26 C 0.03 0.61 11.22 84.74 0.95 1.56 16 27 C 0.05 1.01 11.22 84.79 0.95 1.96 16 28 N -0.45 -10.66 9.86 -184.66 -1.82 -12.48 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 0.55 8.11 -2.39 -0.02 0.53 16 31 H 0.11 0.35 8.07 -2.39 -0.02 0.33 16 32 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.41 7.43 8.44 -92.71 -0.78 6.65 16 34 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 35 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 36 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 37 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 38 H 0.27 15.05 8.31 -92.71 -0.77 14.27 16 39 H 0.12 5.07 5.64 -2.91 -0.02 5.05 16 40 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 41 H 0.18 2.88 8.06 -2.91 -0.02 2.85 16 42 H 0.20 2.08 8.06 -2.91 -0.02 2.05 16 43 H 0.19 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -79.25 379.53 2.85 -76.40 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.27 Total: 28.17 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 6.99 Total: -19.14 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -6.17 Total: -97.75 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.28 Total: -31.40 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -79.25 2.85 -76.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292737313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.104 kcal (2) G-P(sol) polarization free energy of solvation -79.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.44 seconds