Wall clock time and date at job start Wed Apr 1 2020 01:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.52995 * 109.47023 * 175.00196 * 3 2 1 6 6 N 1.46495 * 109.47115 * 175.00361 * 5 3 2 7 7 C 1.34785 * 120.00259 * 179.97438 * 6 5 3 8 8 O 1.21626 * 119.99531 * 0.02562 * 7 6 5 9 9 C 1.47264 * 120.00137 * 179.97438 * 7 6 5 10 10 C 1.36766 * 126.93869 * 0.02562 * 9 7 6 11 11 N 1.34665 * 108.39644 * 179.97438 * 10 9 7 12 12 H 0.96993 * 124.85276 * 180.02562 * 11 10 9 13 13 C 1.36450 * 110.29282 * 0.02562 * 11 10 9 14 14 C 1.34485 * 108.85746 * 359.75188 * 13 11 10 15 15 C 1.50699 * 126.83368 * 180.25689 * 14 13 11 16 16 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 17 17 C 1.34777 * 120.00199 * 85.00207 * 16 3 2 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 3 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 3 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31630 * 120.00506 * 180.02562 * 23 21 20 25 25 Si 1.86809 * 119.99909 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47104 * 90.00095 * 25 23 21 27 27 H 1.48502 * 109.46943 * 210.00235 * 25 23 21 28 28 H 1.48497 * 109.46910 * 330.00035 * 25 23 21 29 29 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 31 31 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 32 32 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 33 33 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 34 34 H 1.08999 * 109.47321 * 295.00347 * 5 3 2 35 35 H 1.09000 * 109.47575 * 55.00163 * 5 3 2 36 36 H 0.97004 * 120.00478 * 359.97438 * 6 5 3 37 37 H 1.08000 * 125.80653 * 359.94478 * 10 9 7 38 38 H 1.08002 * 125.57152 * 179.97438 * 13 11 10 39 39 H 1.09002 * 109.47241 * 270.14591 * 15 14 13 40 40 H 1.09001 * 109.47652 * 30.13913 * 15 14 13 41 41 H 1.09001 * 109.47223 * 150.14575 * 15 14 13 42 42 H 0.97000 * 119.99484 * 264.99304 * 16 3 2 43 43 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 44 44 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 45 45 H 0.97002 * 120.00159 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 7 4.0630 2.8167 0.0060 7 6 5.3857 3.0630 0.0869 8 8 6.1656 2.1457 0.2587 9 6 5.8866 4.4426 -0.0340 10 6 5.1420 5.5732 -0.2285 11 7 5.9774 6.6280 -0.2830 12 1 5.7004 7.5483 -0.4136 13 6 7.2693 6.2171 -0.1281 14 6 7.2842 4.8822 0.0350 15 6 8.4960 4.0112 0.2447 16 7 1.6524 2.0975 -1.2517 17 6 0.4351 2.6645 -1.3668 18 8 -0.3396 2.6320 -0.4342 19 6 0.0340 3.3328 -2.6566 20 16 -1.6471 3.9852 -2.5007 21 6 -1.8510 4.6913 -4.1021 22 1 -1.0506 4.6311 -4.8247 23 6 -3.0406 5.3239 -4.4353 24 7 -3.1931 5.8510 -5.6318 25 14 -4.4258 5.4262 -3.1861 26 1 -4.2789 6.6676 -2.3846 27 1 -5.7308 5.4459 -3.8947 28 1 -4.3689 4.2463 -2.2863 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8499 1.0376 1.0959 35 1 3.9954 0.8311 -0.6660 36 1 3.4411 3.5483 -0.1315 37 1 4.0669 5.6133 -0.3229 38 1 8.1376 6.8593 -0.1319 39 1 8.8770 3.6801 -0.7214 40 1 9.2673 4.5804 0.7635 41 1 8.2203 3.1431 0.8434 42 1 2.2719 2.1232 -1.9977 43 1 0.7225 4.1501 -2.8716 44 1 0.0680 2.6061 -3.4682 45 1 -4.0244 6.2934 -5.8645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297403417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:07 Heat of formation + Delta-G solvation = -42.463107 kcal Electronic energy + Delta-G solvation = -26566.537531 eV Core-core repulsion = 22710.539277 eV Total energy + Delta-G solvation = -3855.998253 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.44988 -40.01901 -39.00057 -36.47116 -34.02716 -32.66022 -32.53938 -32.47207 -30.59365 -29.36261 -27.97592 -26.76916 -25.66306 -24.13724 -22.42300 -21.53898 -20.47735 -20.13841 -19.51277 -18.60650 -17.88511 -16.79705 -16.63568 -16.21583 -15.75875 -15.38299 -15.22209 -15.00245 -14.47763 -14.26298 -14.14319 -13.81544 -13.66171 -13.49073 -13.33851 -13.18693 -12.89737 -12.86421 -12.81371 -12.56499 -12.36500 -11.86970 -11.63823 -11.51928 -11.32016 -11.23911 -11.05998 -10.84334 -10.63071 -9.99064 -9.90676 -9.56324 -9.29131 -9.06526 -8.99764 -8.85371 -8.55818 -8.55732 -6.97219 -6.33766 -4.05873 1.51180 2.14361 2.69032 2.86557 2.90565 3.08396 3.26653 3.29830 3.41624 3.45679 3.61064 4.27994 4.39042 4.56708 4.68555 4.74886 4.80908 4.86874 4.99134 5.05327 5.11591 5.19889 5.25408 5.29205 5.44190 5.51716 5.53885 5.66639 5.68950 5.72484 5.83502 5.87750 5.95503 5.99670 6.03514 6.15989 6.26610 6.48714 6.52213 6.55305 6.62355 7.12482 7.40212 7.53753 7.89190 8.18988 8.36834 8.42547 9.12309 10.75460 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011319 B = 0.002757 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.110292 B =10152.010169 C =12127.738380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C 0.135 3.865 4 H 0.095 0.905 5 C 0.116 3.884 6 N -0.731 5.731 7 C 0.591 3.409 8 O -0.545 6.545 9 C -0.232 4.232 10 C 0.053 3.947 11 N -0.548 5.548 12 H 0.419 0.581 13 C -0.027 4.027 14 C -0.110 4.110 15 C -0.083 4.083 16 N -0.733 5.733 17 C 0.531 3.469 18 O -0.511 6.511 19 C -0.126 4.126 20 S -0.139 6.139 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.268 1.268 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.401 0.599 37 H 0.172 0.828 38 H 0.169 0.831 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.400 0.600 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.078 -3.051 11.911 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.029 3.971 4 H 0.113 0.887 5 C -0.009 4.009 6 N -0.383 5.383 7 C 0.380 3.620 8 O -0.423 6.423 9 C -0.243 4.243 10 C -0.085 4.085 11 N -0.141 5.141 12 H 0.256 0.744 13 C -0.155 4.155 14 C -0.116 4.116 15 C -0.140 4.140 16 N -0.389 5.389 17 C 0.317 3.683 18 O -0.385 6.385 19 C -0.276 4.276 20 S 0.087 5.913 21 C -0.670 4.670 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.682 3.318 26 H -0.193 1.193 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.235 0.765 37 H 0.190 0.810 38 H 0.186 0.814 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.234 0.766 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 19.216 -3.545 13.455 23.724 hybrid contribution -0.060 1.138 -1.439 1.835 sum 19.156 -2.407 12.016 22.740 Atomic orbital electron populations 1.21804 0.94128 1.00729 1.03690 1.21880 0.97673 0.94985 1.02341 1.21266 0.92642 0.94662 0.88486 0.88668 1.21634 0.92393 0.83649 1.03190 1.45833 1.07458 1.09649 1.75365 1.17394 0.81477 0.87535 0.75585 1.90742 1.55893 1.45821 1.49851 1.20324 0.93915 0.92041 1.18003 1.22003 0.96346 0.86440 1.03662 1.41527 1.06551 1.09609 1.56436 0.74403 1.21600 0.86763 0.95536 1.11570 1.20545 0.93434 0.92717 1.04923 1.20185 0.93114 0.98797 1.01884 1.46092 1.17273 1.59159 1.16339 1.20230 0.80975 0.77614 0.89491 1.90720 1.50332 1.57319 1.40100 1.23295 1.03784 1.03060 0.97487 1.84778 1.11255 1.73047 1.22246 1.22315 1.05452 1.41734 0.97466 0.89435 1.24720 0.97813 0.93587 0.95212 1.69938 1.26803 1.35632 1.19289 0.86737 0.81756 0.81177 0.82170 1.19264 1.19949 1.15902 0.93565 0.92089 0.91834 0.91600 0.91081 0.90042 0.90799 0.76467 0.81041 0.81408 0.91842 0.92433 0.90378 0.76571 0.88686 0.88546 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.51 37.16 0.32 -1.51 16 2 C -0.13 -1.25 5.61 -26.73 -0.15 -1.40 16 3 C 0.13 1.31 2.41 -67.93 -0.16 1.15 16 4 H 0.10 1.07 7.58 -51.93 -0.39 0.68 16 5 C 0.12 1.04 5.23 -4.05 -0.02 1.02 16 6 N -0.73 -6.93 5.38 -61.44 -0.33 -7.26 16 7 C 0.59 7.08 7.81 -12.59 -0.10 6.99 16 8 O -0.54 -8.18 15.32 5.25 0.08 -8.10 16 9 C -0.23 -2.49 6.29 -103.36 -0.65 -3.14 16 10 C 0.05 0.42 11.40 -16.84 -0.19 0.23 16 11 N -0.55 -3.53 5.90 -12.85 -0.08 -3.61 16 12 H 0.42 1.42 8.96 -40.82 -0.37 1.06 16 13 C -0.03 -0.20 11.82 -16.82 -0.20 -0.40 16 14 C -0.11 -1.12 6.35 -102.54 -0.65 -1.77 16 15 C -0.08 -0.78 9.97 36.01 0.36 -0.42 16 16 N -0.73 -7.91 4.47 -53.81 -0.24 -8.15 16 17 C 0.53 8.15 6.42 -10.98 -0.07 8.08 16 18 O -0.51 -9.51 13.00 5.55 0.07 -9.44 16 19 C -0.13 -2.22 6.16 36.01 0.22 -2.00 16 20 S -0.14 -3.34 18.55 -107.50 -1.99 -5.34 16 21 C -0.52 -14.55 10.04 30.94 0.31 -14.24 16 22 H 0.09 2.56 8.03 -52.49 -0.42 2.13 16 23 C 0.10 2.72 5.50 -17.43 -0.10 2.63 16 24 N -0.88 -26.06 13.97 55.49 0.78 -25.29 16 25 Si 0.86 21.23 27.74 -169.99 -4.72 16.52 16 26 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.24 -5.80 6.74 56.52 0.38 -5.42 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.83 7.85 -51.93 -0.41 0.42 16 31 H 0.06 0.96 5.64 -51.93 -0.29 0.67 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.40 3.34 7.08 -40.82 -0.29 3.06 16 37 H 0.17 0.99 7.45 -52.49 -0.39 0.60 16 38 H 0.17 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.89 6.86 -51.93 -0.36 0.53 16 42 H 0.40 3.58 8.60 -40.82 -0.35 3.23 16 43 H 0.09 1.54 8.14 -51.91 -0.42 1.12 16 44 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 386.51 15.07 5.82 5.82 Total: -1.00 -35.69 386.51 -8.34 -44.03 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.65 Total: 5.59 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -1.08 Total: -4.79 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.13 Total: -44.30 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.15 Total: -17.54 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.72 Total: 16.52 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -1.99 Total: -5.34 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.69 -8.34 -44.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297403417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.569 kcal (2) G-P(sol) polarization free energy of solvation -35.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds