Wall clock time and date at job start Wed Apr 1 2020 01:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.52995 * 109.47023 * 175.00196 * 3 2 1 6 6 N 1.46495 * 109.47115 * 175.00361 * 5 3 2 7 7 C 1.34785 * 120.00259 * 179.97438 * 6 5 3 8 8 O 1.21626 * 119.99531 * 0.02562 * 7 6 5 9 9 C 1.47264 * 120.00137 * 179.97438 * 7 6 5 10 10 C 1.36766 * 126.93869 * 0.02562 * 9 7 6 11 11 N 1.34665 * 108.39644 * 179.97438 * 10 9 7 12 12 H 0.96993 * 124.85276 * 180.02562 * 11 10 9 13 13 C 1.36450 * 110.29282 * 0.02562 * 11 10 9 14 14 C 1.34485 * 108.85746 * 359.75188 * 13 11 10 15 15 C 1.50699 * 126.83368 * 180.25689 * 14 13 11 16 16 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 17 17 C 1.34777 * 120.00199 * 85.00207 * 16 3 2 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 3 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 3 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31630 * 120.00506 * 180.02562 * 23 21 20 25 25 Si 1.86809 * 119.99909 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47104 * 90.00095 * 25 23 21 27 27 H 1.48502 * 109.46943 * 210.00235 * 25 23 21 28 28 H 1.48497 * 109.46910 * 330.00035 * 25 23 21 29 29 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 31 31 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 32 32 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 33 33 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 34 34 H 1.08999 * 109.47321 * 295.00347 * 5 3 2 35 35 H 1.09000 * 109.47575 * 55.00163 * 5 3 2 36 36 H 0.97004 * 120.00478 * 359.97438 * 6 5 3 37 37 H 1.08000 * 125.80653 * 359.94478 * 10 9 7 38 38 H 1.08002 * 125.57152 * 179.97438 * 13 11 10 39 39 H 1.09002 * 109.47241 * 270.14591 * 15 14 13 40 40 H 1.09001 * 109.47652 * 30.13913 * 15 14 13 41 41 H 1.09001 * 109.47223 * 150.14575 * 15 14 13 42 42 H 0.97000 * 119.99484 * 264.99304 * 16 3 2 43 43 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 44 44 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 45 45 H 0.97002 * 120.00159 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 7 4.0630 2.8167 0.0060 7 6 5.3857 3.0630 0.0869 8 8 6.1656 2.1457 0.2587 9 6 5.8866 4.4426 -0.0340 10 6 5.1420 5.5732 -0.2285 11 7 5.9774 6.6280 -0.2830 12 1 5.7004 7.5483 -0.4136 13 6 7.2693 6.2171 -0.1281 14 6 7.2842 4.8822 0.0350 15 6 8.4960 4.0112 0.2447 16 7 1.6524 2.0975 -1.2517 17 6 0.4351 2.6645 -1.3668 18 8 -0.3396 2.6320 -0.4342 19 6 0.0340 3.3328 -2.6566 20 16 -1.6471 3.9852 -2.5007 21 6 -1.8510 4.6913 -4.1021 22 1 -1.0506 4.6311 -4.8247 23 6 -3.0406 5.3239 -4.4353 24 7 -3.1931 5.8510 -5.6318 25 14 -4.4258 5.4262 -3.1861 26 1 -4.2789 6.6676 -2.3846 27 1 -5.7308 5.4459 -3.8947 28 1 -4.3689 4.2463 -2.2863 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8499 1.0376 1.0959 35 1 3.9954 0.8311 -0.6660 36 1 3.4411 3.5483 -0.1315 37 1 4.0669 5.6133 -0.3229 38 1 8.1376 6.8593 -0.1319 39 1 8.8770 3.6801 -0.7214 40 1 9.2673 4.5804 0.7635 41 1 8.2203 3.1431 0.8434 42 1 2.2719 2.1232 -1.9977 43 1 0.7225 4.1501 -2.8716 44 1 0.0680 2.6061 -3.4682 45 1 -4.0244 6.2934 -5.8645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297403417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:06 Heat of formation + Delta-G solvation = -68.571244 kcal Electronic energy + Delta-G solvation = -26567.669664 eV Core-core repulsion = 22710.539277 eV Total energy + Delta-G solvation = -3857.130387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.08222 -41.09224 -39.95344 -37.50419 -34.93928 -34.65788 -33.60591 -33.31449 -31.37274 -30.57807 -28.91490 -27.82787 -27.41670 -24.97862 -23.19342 -22.55859 -21.55931 -20.82450 -20.29732 -19.81087 -19.18428 -17.97204 -17.60954 -17.18524 -17.05071 -16.78366 -16.37837 -16.17166 -15.80837 -15.11652 -15.00018 -14.93480 -14.81546 -14.63701 -14.50460 -14.19237 -14.00878 -13.74944 -13.56220 -13.53182 -13.32035 -13.26001 -13.03689 -12.90742 -12.67799 -12.44183 -12.31128 -12.09124 -11.85438 -11.74923 -11.15885 -10.91223 -10.87391 -10.49977 -10.15057 -10.04995 -9.52736 -9.17164 -8.95731 -8.50438 -6.19945 0.79126 1.01816 1.31799 1.47976 1.51352 1.57569 1.64076 2.15305 2.25110 2.31852 2.49430 2.59800 2.74498 2.88146 3.57768 3.91416 3.98849 4.00343 4.09431 4.16036 4.28293 4.30963 4.42912 4.45865 4.51574 4.58045 4.66615 4.77437 4.86424 4.89732 4.94560 4.97250 5.08900 5.18224 5.20274 5.33963 5.45723 5.50460 5.56125 5.71756 5.84601 5.98510 6.13072 6.49476 6.59648 6.69318 6.95142 7.25587 7.35014 8.61998 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011319 B = 0.002757 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.110292 B =10152.010169 C =12127.738380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.144 3.856 4 H 0.085 0.915 5 C 0.123 3.877 6 N -0.721 5.721 7 C 0.587 3.413 8 O -0.584 6.584 9 C -0.269 4.269 10 C 0.063 3.937 11 N -0.536 5.536 12 H 0.436 0.564 13 C -0.013 4.013 14 C -0.149 4.149 15 C -0.077 4.077 16 N -0.710 5.710 17 C 0.541 3.459 18 O -0.544 6.544 19 C -0.114 4.114 20 S -0.168 6.168 21 C -0.528 4.528 22 H 0.060 0.940 23 C 0.044 3.956 24 N -0.919 5.919 25 Si 0.914 3.086 26 H -0.261 1.261 27 H -0.263 1.263 28 H -0.235 1.235 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.407 0.593 37 H 0.194 0.806 38 H 0.199 0.801 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.051 0.949 42 H 0.413 0.587 43 H 0.114 0.886 44 H 0.106 0.894 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.907 -2.642 12.896 24.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.164 4.164 3 C 0.039 3.961 4 H 0.103 0.897 5 C -0.001 4.001 6 N -0.373 5.373 7 C 0.378 3.622 8 O -0.466 6.466 9 C -0.280 4.280 10 C -0.076 4.076 11 N -0.130 5.130 12 H 0.276 0.724 13 C -0.141 4.141 14 C -0.155 4.155 15 C -0.135 4.135 16 N -0.365 5.365 17 C 0.326 3.674 18 O -0.421 6.421 19 C -0.265 4.265 20 S 0.058 5.942 21 C -0.675 4.675 22 H 0.079 0.921 23 C -0.161 4.161 24 N -0.557 5.557 25 Si 0.736 3.264 26 H -0.186 1.186 27 H -0.188 1.188 28 H -0.159 1.159 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.243 0.757 37 H 0.211 0.789 38 H 0.216 0.784 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.250 0.750 43 H 0.132 0.868 44 H 0.124 0.876 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 20.060 -3.117 14.422 24.902 hybrid contribution -0.174 0.986 -1.759 2.024 sum 19.886 -2.131 12.663 23.671 Atomic orbital electron populations 1.21737 0.96141 1.00685 1.01477 1.21865 0.95599 0.94893 1.04052 1.21261 0.93001 0.94642 0.87192 0.89669 1.21584 0.91347 0.83539 1.03624 1.45748 1.06916 1.10071 1.74574 1.17676 0.81735 0.87855 0.74966 1.90715 1.56894 1.47026 1.51960 1.20438 0.94900 0.92164 1.20447 1.22275 0.97284 0.86004 1.02025 1.41602 1.06119 1.10248 1.55080 0.72419 1.22013 0.87891 0.94962 1.09279 1.20818 0.93458 0.94125 1.07087 1.20100 0.93791 0.98187 1.01379 1.45837 1.15760 1.57577 1.17291 1.19745 0.81931 0.77684 0.88029 1.90724 1.51655 1.58888 1.40843 1.23291 0.99838 1.03948 0.99416 1.84666 1.16685 1.73256 1.19548 1.22489 1.04690 1.41514 0.98850 0.92138 1.25575 1.00215 0.93421 0.96901 1.70022 1.27844 1.36828 1.21040 0.85865 0.79258 0.81235 0.79999 1.18589 1.18775 1.15912 0.92551 0.93663 0.94604 0.90418 0.88878 0.89651 0.90355 0.75674 0.78923 0.78413 0.92299 0.90380 0.93005 0.75029 0.86819 0.87566 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.51 71.98 0.61 -2.79 16 2 C -0.13 -2.12 5.61 30.60 0.17 -1.95 16 3 C 0.14 2.50 2.41 44.99 0.11 2.61 16 4 H 0.09 1.76 7.58 -2.38 -0.02 1.75 16 5 C 0.12 1.97 5.23 86.38 0.45 2.42 16 6 N -0.72 -12.60 5.38 -466.53 -2.51 -15.11 16 7 C 0.59 13.80 7.81 86.61 0.68 14.47 16 8 O -0.58 -17.79 15.32 -4.11 -0.06 -17.86 16 9 C -0.27 -5.52 6.29 -19.04 -0.12 -5.64 16 10 C 0.06 0.87 11.40 83.91 0.96 1.83 16 11 N -0.54 -5.42 5.90 -194.55 -1.15 -6.57 16 12 H 0.44 1.54 8.96 -92.71 -0.83 0.71 16 13 C -0.01 -0.17 11.82 83.12 0.98 0.81 16 14 C -0.15 -2.89 6.35 -18.52 -0.12 -3.01 16 15 C -0.08 -1.46 9.97 71.24 0.71 -0.75 16 16 N -0.71 -13.77 4.47 -442.53 -1.98 -15.75 16 17 C 0.54 15.76 6.42 87.66 0.56 16.33 16 18 O -0.54 -19.77 13.00 -3.04 -0.04 -19.81 16 19 C -0.11 -3.87 6.16 71.24 0.44 -3.43 16 20 S -0.17 -7.96 18.55 -56.49 -1.05 -9.01 16 21 C -0.53 -29.64 10.04 67.95 0.68 -28.96 16 22 H 0.06 3.60 8.03 -2.91 -0.02 3.58 16 23 C 0.04 2.52 5.50 84.86 0.47 2.99 16 24 N -0.92 -55.01 13.97 21.65 0.30 -54.71 16 25 Si 0.91 43.77 27.74 68.60 1.90 45.67 16 26 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 27 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 28 H -0.24 -11.19 6.74 99.48 0.67 -10.52 16 29 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.04 1.20 7.85 -2.38 -0.02 1.18 16 31 H 0.03 1.05 5.64 -2.39 -0.01 1.03 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.41 5.97 7.08 -92.71 -0.66 5.31 16 37 H 0.19 1.68 7.45 -2.91 -0.02 1.66 16 38 H 0.20 1.15 8.06 -2.91 -0.02 1.12 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.05 1.24 6.86 -2.39 -0.02 1.22 16 42 H 0.41 6.25 8.60 -92.71 -0.80 5.45 16 43 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 44 H 0.11 3.44 8.14 -2.40 -0.02 3.42 16 45 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -79.45 386.51 0.72 -78.73 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -1.28 Total: 19.50 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 6.58 Total: -5.07 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -5.33 Total: -92.14 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.10 Total: -37.67 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.90 Total: 45.67 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.05 Total: -9.01 kcal Total: -79.45 0.72 -78.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297403417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.155 kcal (2) G-P(sol) polarization free energy of solvation -79.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds