Wall clock time and date at job start Tue Mar 31 2020 22:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46856 * 2 1 4 4 C 1.50695 * 109.47224 * 119.99994 * 2 1 3 5 5 N 1.29034 * 124.91330 * 120.00034 * 4 2 1 6 6 C 1.31776 * 117.12603 * 179.73408 * 5 4 2 7 7 C 1.50694 * 122.75407 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47277 * 265.00390 * 7 6 5 9 9 N 1.46507 * 109.46952 * 179.97438 * 8 7 6 10 10 C 1.34775 * 119.99540 * 179.97438 * 9 8 7 11 11 O 1.21355 * 120.00382 * 359.97438 * 10 9 8 12 12 C 1.49455 * 119.99886 * 179.97438 * 10 9 8 13 13 O 1.21347 * 119.99964 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99907 * 179.97438 * 12 10 9 15 15 C 1.46506 * 119.99523 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.46590 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.46915 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99995 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00248 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00347 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99751 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47100 * 90.00263 * 21 19 17 23 23 H 1.48500 * 109.47136 * 210.00189 * 21 19 17 24 24 H 1.48504 * 109.47230 * 330.00326 * 21 19 17 25 25 C 1.33639 * 114.49979 * 359.97438 * 6 5 4 26 26 S 1.70972 * 124.92008 * 299.69339 * 4 2 1 27 27 H 1.09001 * 109.47198 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46796 * 299.99651 * 1 2 3 29 29 H 1.08996 * 109.47320 * 59.99392 * 1 2 3 30 30 H 1.09000 * 109.46587 * 240.00739 * 2 1 3 31 31 H 1.09003 * 109.47303 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47653 * 300.00404 * 3 2 1 33 33 H 1.09006 * 109.47134 * 60.00556 * 3 2 1 34 34 H 1.09004 * 109.46842 * 25.00278 * 7 6 5 35 35 H 1.09002 * 109.47345 * 144.99684 * 7 6 5 36 36 H 1.09000 * 109.46644 * 299.99544 * 8 7 6 37 37 H 1.08997 * 109.47090 * 59.99531 * 8 7 6 38 38 H 0.96996 * 119.99919 * 359.97438 * 9 8 7 39 39 H 0.96995 * 120.00435 * 0.02562 * 14 12 10 40 40 H 1.08996 * 109.47027 * 300.00238 * 15 14 12 41 41 H 1.08994 * 109.46706 * 60.00831 * 15 14 12 42 42 H 1.09000 * 109.47873 * 299.99933 * 16 15 14 43 43 H 1.09002 * 109.47315 * 60.00214 * 16 15 14 44 44 H 0.96995 * 119.99791 * 180.02562 * 20 19 17 45 45 H 1.08002 * 126.03942 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.7773 -1.7639 1.2225 6 6 3.1328 -2.2572 2.3916 7 6 4.0002 -3.4817 2.5302 8 6 3.1147 -4.7165 2.7085 9 7 3.9580 -5.9070 2.8427 10 6 3.3917 -7.1183 3.0114 11 8 2.1834 -7.2229 3.0528 12 6 4.2520 -8.3328 3.1477 13 8 5.4602 -8.2284 3.1059 14 7 3.6857 -9.5441 3.3169 15 6 4.5290 -10.7347 3.4499 16 6 3.6434 -11.9694 3.6292 17 6 4.5108 -13.1941 3.7666 18 1 5.5862 -13.1010 3.7302 19 6 3.9316 -14.4334 3.9388 20 7 4.6886 -15.5021 4.0593 21 14 2.0717 -14.5943 4.0025 22 1 1.5467 -14.8149 2.6311 23 1 1.7037 -15.7460 4.8646 24 1 1.4860 -13.3498 4.5625 25 6 2.6620 -1.5819 3.4443 26 16 1.7039 -0.2328 2.8389 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 4.6100 -3.5982 1.6342 35 1 4.6489 -3.3710 3.3992 36 1 2.5050 -4.5999 3.6045 37 1 2.4661 -4.8271 1.8395 38 1 4.9238 -5.8233 2.8100 39 1 2.7199 -9.6277 3.3500 40 1 5.1371 -10.8513 2.5529 41 1 5.1791 -10.6243 4.3178 42 1 3.0350 -11.8531 4.5260 43 1 2.9936 -12.0796 2.7610 44 1 4.2810 -16.3739 4.1801 45 1 2.8369 -1.8215 4.4828 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323735261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:07 Heat of formation + Delta-G solvation = -48.678213 kcal Electronic energy + Delta-G solvation = -25140.940226 eV Core-core repulsion = 21284.672465 eV Total energy + Delta-G solvation = -3856.267760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.65388 -40.31532 -38.40348 -36.55413 -35.69409 -34.96556 -32.82877 -32.08768 -30.29033 -29.16506 -27.79232 -26.38556 -25.54479 -24.21807 -22.60298 -21.34681 -20.89493 -20.47844 -19.96880 -18.37867 -17.93964 -17.07527 -16.63924 -16.29420 -16.02802 -15.71706 -15.11941 -15.06141 -14.84043 -14.72527 -14.28709 -14.17188 -13.96632 -13.67338 -13.55895 -13.43682 -13.05743 -12.85244 -12.61516 -12.36045 -12.29187 -12.06023 -11.78994 -11.73346 -11.60460 -11.49847 -11.42836 -11.24794 -10.44370 -10.30705 -10.08154 -9.96058 -9.85043 -9.48740 -9.43382 -9.32458 -9.16473 -8.77612 -8.61255 -6.12388 -4.13096 0.24360 0.90051 1.29008 1.53767 2.21105 2.52483 3.26717 3.34689 3.35394 3.36640 3.43859 3.80665 4.23167 4.37844 4.39693 4.46797 4.53187 4.56892 4.68832 4.71082 4.89752 4.99628 5.00787 5.08163 5.19263 5.20804 5.22180 5.39027 5.51693 5.56014 5.60852 5.63080 5.71776 5.96829 6.02046 6.10436 6.47103 6.50992 6.92539 7.09182 7.18525 7.30587 7.55439 7.62554 7.84222 8.20573 8.41784 8.90897 9.47634 11.00361 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027414 B = 0.001527 C = 0.001495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.114708 B =18333.217147 C =18729.591830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.022 4.022 3 C -0.147 4.147 4 C 0.059 3.941 5 N -0.468 5.468 6 C 0.074 3.926 7 C -0.058 4.058 8 C 0.126 3.874 9 N -0.705 5.705 10 C 0.509 3.491 11 O -0.521 6.521 12 C 0.499 3.501 13 O -0.529 6.529 14 N -0.691 5.691 15 C 0.127 3.873 16 C -0.024 4.024 17 C -0.524 4.524 18 H 0.077 0.923 19 C 0.071 3.929 20 N -0.897 5.897 21 Si 0.881 3.119 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.265 1.265 25 C -0.256 4.256 26 S 0.124 5.876 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.414 0.586 39 H 0.409 0.591 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.025 0.975 43 H 0.020 0.980 44 H 0.265 0.735 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.422 37.988 -5.005 39.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.044 4.044 3 C -0.206 4.206 4 C -0.219 4.219 5 N -0.182 5.182 6 C -0.058 4.058 7 C -0.099 4.099 8 C 0.002 3.998 9 N -0.359 5.359 10 C 0.290 3.710 11 O -0.396 6.396 12 C 0.279 3.721 13 O -0.406 6.406 14 N -0.342 5.342 15 C 0.005 3.995 16 C -0.062 4.062 17 C -0.563 4.563 18 H 0.095 0.905 19 C -0.131 4.131 20 N -0.535 5.535 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.190 1.190 25 C -0.395 4.395 26 S 0.380 5.620 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.250 0.750 39 H 0.244 0.756 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.043 0.957 43 H 0.039 0.961 44 H 0.075 0.925 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -7.852 38.349 -5.003 39.464 hybrid contribution -0.402 -1.047 0.229 1.145 sum -8.254 37.302 -4.774 38.502 Atomic orbital electron populations 1.21940 0.92971 1.02936 1.02816 1.19863 0.96252 0.95447 0.92878 1.21935 1.01824 0.93986 1.02827 1.27126 0.99473 0.96282 0.99063 1.66116 1.13187 1.10437 1.28416 1.19896 1.00670 0.98735 0.86522 1.20340 0.96232 0.88730 1.04556 1.21352 0.93104 0.82386 1.02967 1.45692 1.11622 1.05890 1.72740 1.20428 0.88292 0.84818 0.77487 1.90760 1.14289 1.86276 1.48252 1.19933 0.88056 0.84739 0.79406 1.90746 1.13927 1.86168 1.49789 1.46210 1.12099 1.06558 1.69301 1.21720 0.93664 0.82139 1.01933 1.19829 0.96237 0.92961 0.97152 1.20878 0.94898 0.89543 1.50953 0.90527 1.24980 0.98200 0.95676 0.94282 1.69897 1.35450 0.98773 1.49416 0.86771 0.86001 0.78036 0.78429 1.20157 1.21219 1.18962 1.26902 1.06958 1.00966 1.04691 1.83937 1.48103 1.28358 1.01642 0.91832 0.92176 0.90984 0.87943 0.91956 0.90991 0.92183 0.88842 0.89041 0.90804 0.90616 0.74963 0.75561 0.91232 0.91207 0.95712 0.96137 0.92504 0.80339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.09 37.16 0.34 -0.31 16 2 C -0.02 -0.12 3.35 -91.77 -0.31 -0.43 16 3 C -0.15 -0.58 9.09 37.16 0.34 -0.24 16 4 C 0.06 0.45 6.03 -13.46 -0.08 0.37 16 5 N -0.47 -4.52 10.53 -8.06 -0.08 -4.61 16 6 C 0.07 0.63 5.99 -84.23 -0.50 0.12 16 7 C -0.06 -0.42 5.74 -27.89 -0.16 -0.58 16 8 C 0.13 1.17 5.66 -4.04 -0.02 1.15 16 9 N -0.71 -7.68 5.55 -60.72 -0.34 -8.02 16 10 C 0.51 7.34 7.89 -11.58 -0.09 7.25 16 11 O -0.52 -8.56 16.48 5.49 0.09 -8.47 16 12 C 0.50 8.25 7.89 -11.58 -0.09 8.16 16 13 O -0.53 -9.67 16.48 5.50 0.09 -9.58 16 14 N -0.69 -11.94 5.55 -60.73 -0.34 -12.27 16 15 C 0.13 2.55 5.61 -4.04 -0.02 2.52 16 16 C -0.02 -0.55 4.16 -27.88 -0.12 -0.67 16 17 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 18 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 19 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 20 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 21 Si 0.88 21.19 27.47 -169.99 -4.67 16.53 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 25 C -0.26 -1.81 11.14 29.12 0.32 -1.49 16 26 S 0.12 0.79 22.53 -107.50 -2.42 -1.63 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.24 7.94 -51.93 -0.41 -0.18 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.21 7.92 -51.93 -0.41 -0.20 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.41 3.91 7.94 -40.82 -0.32 3.59 16 39 H 0.41 6.58 7.94 -40.82 -0.32 6.25 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 43 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16 44 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.18 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 396.50 15.07 5.98 5.98 Total: -1.00 -33.55 396.50 -8.65 -42.20 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.90 Total: 3.43 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -0.83 Total: 2.88 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.01 Total: -51.31 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.18 Total: -18.06 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.53 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.42 Total: -1.63 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.55 -8.65 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323735261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.482 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds