Wall clock time and date at job start Tue Mar 31 2020 23:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47090 * 2 1 4 4 C 1.52998 * 109.47121 * 119.99678 * 2 1 3 5 5 C 1.50700 * 109.47427 * 175.00326 * 4 2 1 6 6 N 1.29430 * 124.80791 * 89.97395 * 5 4 2 7 7 C 1.30939 * 117.36255 * 180.02562 * 6 5 4 8 8 C 1.35660 * 114.19388 * 359.97438 * 7 6 5 9 9 C 1.46684 * 126.13052 * 180.02562 * 8 7 6 10 10 O 1.21684 * 120.00343 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99944 * 0.02565 * 9 8 7 12 12 C 1.46498 * 120.00059 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47266 * 179.97438 * 12 11 9 14 14 O 1.42901 * 113.28225 * 313.06769 * 13 12 11 15 15 C 1.53492 * 114.20723 * 179.97438 * 13 12 11 16 16 N 1.47069 * 87.98838 * 220.34480 * 15 13 12 17 17 C 1.36936 * 136.06301 * 207.07784 * 16 15 13 18 18 H 1.08006 * 119.99418 * 7.84113 * 17 16 15 19 19 C 1.38804 * 120.00237 * 187.83484 * 17 16 15 20 20 N 1.31625 * 119.99842 * 195.05312 * 19 17 16 21 21 Si 1.86804 * 120.00142 * 15.32461 * 19 17 16 22 22 H 1.48501 * 109.47266 * 269.72654 * 21 19 17 23 23 H 1.48499 * 109.46684 * 29.72784 * 21 19 17 24 24 H 1.48499 * 109.47124 * 149.72495 * 21 19 17 25 25 C 1.47077 * 87.88174 * 27.34535 * 16 15 13 26 26 S 1.70962 * 124.80099 * 270.29682 * 5 4 2 27 27 H 1.09001 * 109.47019 * 300.00031 * 1 2 3 28 28 H 1.08997 * 109.46980 * 60.00127 * 1 2 3 29 29 H 1.08997 * 109.47303 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47517 * 240.00049 * 2 1 3 31 31 H 1.09000 * 109.47189 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47106 * 299.99796 * 3 2 1 33 33 H 1.09001 * 109.47215 * 60.00089 * 3 2 1 34 34 H 1.09003 * 109.47095 * 54.99825 * 4 2 1 35 35 H 1.09005 * 109.47257 * 295.00255 * 4 2 1 36 36 H 1.08001 * 122.90241 * 179.97438 * 7 6 5 37 37 H 0.96998 * 120.00211 * 359.97438 * 11 9 8 38 38 H 1.08998 * 109.47277 * 59.99632 * 12 11 9 39 39 H 1.08998 * 109.46987 * 299.99544 * 12 11 9 40 40 H 0.96697 * 114.00305 * 46.93333 * 14 13 12 41 41 H 1.08997 * 113.46930 * 105.57004 * 15 13 12 42 42 H 1.09004 * 113.52079 * 335.13441 * 15 13 12 43 43 H 0.96999 * 120.00088 * 355.18627 * 20 19 17 44 44 H 1.08999 * 113.46528 * 87.43645 * 25 16 15 45 45 H 1.08996 * 113.46472 * 217.87933 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1890 6 7 4.3654 0.0502 1.6616 7 6 5.6455 -0.1915 1.5291 8 6 5.9284 -1.3595 0.8997 9 6 7.2675 -1.8860 0.6144 10 8 7.3928 -2.9514 0.0400 11 7 8.3591 -1.1897 0.9886 12 6 9.6965 -1.7151 0.7031 13 6 10.7509 -0.7385 1.2278 14 8 10.4893 0.6204 0.8713 15 6 12.1991 -1.1856 0.9851 16 7 12.5227 -0.6911 2.3318 17 6 13.6374 -0.2072 2.9631 18 1 14.5348 -0.0072 2.3964 19 6 13.6138 0.0264 4.3312 20 7 14.5556 0.7563 4.8904 21 14 12.2499 -0.7014 5.3797 22 1 11.1176 0.2565 5.4537 23 1 11.7833 -1.9733 4.7716 24 1 12.7645 -0.9661 6.7473 25 6 11.1239 -0.9514 2.7042 26 16 4.3990 -2.1274 0.4797 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6053 -1.7197 1.2952 35 1 1.7515 -0.1582 2.1370 36 1 6.4099 0.4808 1.8897 37 1 8.2593 -0.3402 1.4461 38 1 9.8173 -1.8359 -0.3734 39 1 9.8196 -2.6809 1.1932 40 1 9.5762 0.8987 1.0257 41 1 12.6965 -0.6324 0.1885 42 1 12.3094 -2.2651 0.8810 43 1 15.3034 1.0727 4.3598 44 1 10.9499 -1.9691 3.0535 45 1 10.7053 -0.1986 3.3721 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325318422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:44 Heat of formation + Delta-G solvation = 17.524503 kcal Electronic energy + Delta-G solvation = -26596.869673 eV Core-core repulsion = 22743.472678 eV Total energy + Delta-G solvation = -3853.396995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.61943 -39.84625 -38.89998 -36.82717 -35.37086 -34.29178 -32.33652 -31.65590 -29.40114 -28.26088 -27.57324 -25.90419 -25.50239 -24.77488 -22.32502 -21.42030 -20.84248 -20.14972 -19.64132 -18.63848 -17.88652 -17.47552 -16.47769 -15.96743 -15.78608 -15.54019 -15.38341 -15.03212 -14.73986 -14.46859 -14.34244 -14.02749 -13.86140 -13.63026 -13.31627 -13.13359 -12.93946 -12.74688 -12.70508 -12.35898 -12.13899 -11.92520 -11.65591 -11.63524 -11.40026 -11.22658 -11.01768 -10.69929 -10.52766 -10.26951 -10.12871 -9.87928 -9.82044 -9.47483 -9.32982 -9.21881 -9.08409 -8.72869 -7.22256 -6.32575 -3.23866 -0.12556 0.77068 1.30493 2.10189 2.90754 2.92273 3.36200 3.43824 3.57939 3.58690 4.19127 4.28356 4.34008 4.37641 4.46921 4.55705 4.57173 4.72772 4.78940 4.83781 5.00055 5.02927 5.08058 5.22100 5.28147 5.41509 5.42052 5.45721 5.46873 5.60569 5.67219 5.74474 5.81240 5.92764 5.96701 6.07662 6.12512 6.23017 6.31348 6.50389 7.06015 7.09488 7.23132 7.77329 7.88506 8.22394 8.95484 9.48030 10.32086 11.17810 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020000 B = 0.002322 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.693216 B =12053.535470 C =12518.376271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.044 4.044 5 C 0.047 3.953 6 N -0.473 5.473 7 C 0.096 3.904 8 C -0.298 4.298 9 C 0.597 3.403 10 O -0.533 6.533 11 N -0.714 5.714 12 C 0.107 3.893 13 C 0.071 3.929 14 O -0.516 6.516 15 C 0.136 3.864 16 N -0.613 5.613 17 C -0.301 4.301 18 H 0.083 0.917 19 C -0.024 4.024 20 N -0.931 5.931 21 Si 1.063 2.937 22 H -0.294 1.294 23 H -0.283 1.283 24 H -0.294 1.294 25 C 0.079 3.921 26 S 0.227 5.773 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.182 0.818 37 H 0.398 0.602 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.361 0.639 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.262 0.738 44 H 0.055 0.945 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.081 -3.653 -10.599 32.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.085 4.085 5 C -0.227 4.227 6 N -0.187 5.187 7 C -0.063 4.063 8 C -0.422 4.422 9 C 0.382 3.618 10 O -0.411 6.411 11 N -0.367 5.367 12 C -0.017 4.017 13 C 0.028 3.972 14 O -0.320 6.320 15 C 0.009 3.991 16 N -0.340 5.340 17 C -0.427 4.427 18 H 0.101 0.899 19 C -0.223 4.223 20 N -0.573 5.573 21 Si 0.895 3.105 22 H -0.222 1.222 23 H -0.209 1.209 24 H -0.222 1.222 25 C -0.047 4.047 26 S 0.485 5.515 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.198 0.802 37 H 0.233 0.767 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.207 0.793 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -30.215 -4.888 -9.771 32.130 hybrid contribution 0.882 1.063 -0.704 1.551 sum -29.333 -3.825 -10.475 31.382 Atomic orbital electron populations 1.21831 0.94136 1.02053 1.02397 1.21142 0.96218 0.97096 0.96659 1.21857 1.01798 0.95022 1.01838 1.20500 0.84565 1.02619 1.00828 1.27556 1.01668 0.94184 0.99286 1.66152 1.02076 1.29883 1.20549 1.22221 0.92942 0.94589 0.96580 1.25744 0.99109 1.02851 1.14531 1.16651 0.82343 0.84079 0.78768 1.90859 1.86762 1.21609 1.41864 1.45687 1.05898 1.24753 1.60411 1.22043 0.79396 0.98231 1.02053 1.23298 0.95156 0.81841 0.96910 1.86705 1.32126 1.25902 1.87245 1.22362 0.88521 0.97086 0.91179 1.45894 1.06175 1.73071 1.08822 1.20097 0.90710 1.39537 0.92381 0.89935 1.25765 1.03863 0.98827 0.93888 1.70892 1.12807 1.34209 1.39364 0.83764 0.74693 0.76202 0.75867 1.22225 1.20914 1.22166 1.23432 0.87558 0.99257 0.94438 1.84089 0.94495 1.21739 1.51152 0.92247 0.92145 0.92411 0.90907 0.92173 0.92727 0.92244 0.89284 0.88275 0.80162 0.76675 0.90098 0.89572 0.79260 0.92385 0.92853 0.92788 0.92797 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.19 37.16 0.34 -0.22 16 2 C -0.09 -0.47 2.91 -90.62 -0.26 -0.73 16 3 C -0.15 -0.94 8.99 37.16 0.33 -0.60 16 4 C -0.04 -0.24 5.27 -27.88 -0.15 -0.39 16 5 C 0.05 0.39 5.88 -13.29 -0.08 0.31 16 6 N -0.47 -4.59 9.74 -11.50 -0.11 -4.70 16 7 C 0.10 0.90 10.93 -18.85 -0.21 0.69 16 8 C -0.30 -3.17 6.48 -37.10 -0.24 -3.41 16 9 C 0.60 7.60 7.79 -12.85 -0.10 7.50 16 10 O -0.53 -8.53 16.97 5.20 0.09 -8.44 16 11 N -0.71 -8.11 5.32 -61.62 -0.33 -8.44 16 12 C 0.11 1.42 5.42 -4.04 -0.02 1.40 16 13 C 0.07 1.17 1.74 -89.97 -0.16 1.01 16 14 O -0.52 -8.46 13.56 -35.23 -0.48 -8.94 16 15 C 0.14 2.64 8.10 -8.50 -0.07 2.57 16 16 N -0.61 -15.03 3.62 -184.56 -0.67 -15.69 16 17 C -0.30 -8.75 11.03 -15.06 -0.17 -8.92 16 18 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 19 C -0.02 -0.73 5.50 -17.43 -0.10 -0.82 16 20 N -0.93 -29.55 13.70 55.49 0.76 -28.79 16 21 Si 1.06 26.53 25.51 -169.99 -4.34 22.19 16 22 H -0.29 -7.01 6.97 56.52 0.39 -6.61 16 23 H -0.28 -6.49 5.65 56.52 0.32 -6.17 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 25 C 0.08 1.61 5.04 -8.36 -0.04 1.56 16 26 S 0.23 2.03 23.01 -107.50 -2.47 -0.44 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.49 6.80 -51.93 -0.35 0.13 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.18 1.25 7.15 -52.49 -0.38 0.87 16 37 H 0.40 3.55 5.66 -40.82 -0.23 3.32 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.09 1.18 7.89 -51.93 -0.41 0.77 16 40 H 0.36 4.08 7.20 45.56 0.33 4.41 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.05 0.94 8.11 -51.93 -0.42 0.52 16 43 H 0.26 8.23 8.73 -40.82 -0.36 7.87 16 44 H 0.05 1.06 6.80 -51.93 -0.35 0.70 16 45 H 0.06 1.18 6.24 -51.93 -0.32 0.85 16 LS Contribution 379.51 15.07 5.72 5.72 Total: -1.00 -36.57 379.51 -8.77 -45.34 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.03 Total: 2.26 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -0.91 Total: -0.05 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.35 Total: -57.63 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.39 Total: -17.38 kcal Atomic # 14 Polarization: 26.53 SS G_CDS: -4.34 Total: 22.19 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.47 Total: -0.44 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.57 -8.77 -45.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325318422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.862 kcal (2) G-P(sol) polarization free energy of solvation -36.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds