Wall clock time and date at job start Wed Apr 1 2020 00:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47354 * 2 1 4 4 H 1.08992 * 109.47282 * 305.00945 * 3 2 1 5 5 C 1.53000 * 109.47402 * 185.00231 * 3 2 1 6 6 N 1.46501 * 109.47062 * 185.00517 * 5 3 2 7 7 C 1.34780 * 119.99834 * 179.97438 * 6 5 3 8 8 O 1.21694 * 120.00111 * 355.23055 * 7 6 5 9 9 C 1.46677 * 119.99836 * 175.22976 * 7 6 5 10 10 C 1.37873 * 126.23234 * 358.04114 * 9 7 6 11 11 C 1.39837 * 107.08450 * 180.02562 * 10 9 7 12 12 C 1.35451 * 107.86346 * 0.02562 * 11 10 9 13 13 N 1.35530 * 108.87460 * 359.73264 * 12 11 10 14 14 C 1.46500 * 125.68444 * 180.29883 * 13 12 11 15 15 N 1.46506 * 109.46518 * 65.00413 * 3 2 1 16 16 C 1.34780 * 119.99883 * 274.72354 * 15 3 2 17 17 O 1.21282 * 119.99658 * 0.27854 * 16 15 3 18 18 C 1.50697 * 120.00254 * 180.28195 * 16 15 3 19 19 S 1.80997 * 109.47207 * 180.02562 * 18 16 15 20 20 C 1.76208 * 99.99924 * 179.97438 * 19 18 16 21 21 H 1.07996 * 119.99874 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99920 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00271 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99904 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47347 * 89.99835 * 24 22 20 26 26 H 1.48498 * 109.47206 * 210.00013 * 24 22 20 27 27 H 1.48502 * 109.47096 * 330.00063 * 24 22 20 28 28 H 1.09000 * 109.47154 * 59.99374 * 1 2 3 29 29 H 1.09001 * 109.47138 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47133 * 299.99432 * 1 2 3 31 31 H 1.09006 * 109.47133 * 240.00568 * 2 1 3 32 32 H 1.08994 * 109.47476 * 120.00365 * 2 1 3 33 33 H 1.09002 * 109.47101 * 305.00165 * 5 3 2 34 34 H 1.08995 * 109.46949 * 64.99913 * 5 3 2 35 35 H 0.97000 * 120.00226 * 359.97438 * 6 5 3 36 36 H 1.07993 * 126.46074 * 359.97382 * 10 9 7 37 37 H 1.08003 * 126.06899 * 180.02562 * 11 10 9 38 38 H 1.08006 * 125.56440 * 179.97438 * 12 11 10 39 39 H 1.09002 * 109.47238 * 265.97689 * 14 13 12 40 40 H 1.09000 * 109.46398 * 25.97394 * 14 13 12 41 41 H 1.08994 * 109.47289 * 145.97297 * 14 13 12 42 42 H 0.96991 * 120.00481 * 95.00393 * 15 3 2 43 43 H 1.09002 * 109.46671 * 299.99598 * 18 16 15 44 44 H 1.08998 * 109.47206 * 59.99414 * 18 16 15 45 45 H 0.96997 * 120.00233 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8416 5 6 3.5648 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0059 7 6 5.3858 3.0629 -0.0858 8 8 6.1727 2.1385 -0.1703 9 6 5.8767 4.4450 -0.0708 10 6 5.1023 5.5844 -0.0179 11 6 5.9764 6.6759 -0.0235 12 6 7.2414 6.1949 -0.0791 13 7 7.1948 4.8406 -0.1027 14 6 8.3541 3.9465 -0.1560 15 7 1.6525 2.0974 1.2519 16 6 0.4372 2.6691 1.3653 17 8 -0.3373 2.6371 0.4326 18 6 0.0409 3.3483 2.6508 19 16 -1.6356 4.0114 2.4909 20 6 -1.8350 4.7276 4.0885 21 1 -1.0352 4.6657 4.8116 22 6 -3.0199 5.3711 4.4175 23 7 -3.9945 5.4469 3.5360 24 14 -3.2310 6.1309 6.1109 25 1 -2.7633 7.5401 6.0830 26 1 -4.6649 6.0928 6.4953 27 1 -2.4326 5.3640 7.1006 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.9954 0.8311 0.6658 34 1 3.8498 1.0377 -1.0961 35 1 3.4410 3.5484 0.1310 36 1 4.0238 5.6262 0.0199 37 1 5.6931 7.7176 0.0105 38 1 8.1406 6.7929 -0.0974 39 1 8.5652 3.6866 -1.1933 40 1 9.2199 4.4482 0.2763 41 1 8.1398 3.0397 0.4094 42 1 2.2719 2.1230 1.9978 43 1 0.0693 2.6262 3.4669 44 1 0.7353 4.1617 2.8611 45 1 -4.8227 5.8963 3.7661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356868792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:23 Heat of formation + Delta-G solvation = -30.577366 kcal Electronic energy + Delta-G solvation = -26600.260664 eV Core-core repulsion = 22744.777815 eV Total energy + Delta-G solvation = -3855.482849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.61439 -39.96335 -39.03181 -36.47474 -34.28688 -32.97742 -32.45561 -32.42048 -30.26491 -29.16093 -27.85962 -26.76194 -25.49591 -24.05052 -22.25554 -21.48009 -20.73330 -20.39019 -19.78551 -18.28443 -17.77201 -16.71192 -16.31751 -16.27572 -15.94227 -15.57686 -15.24225 -14.89910 -14.81293 -14.24972 -14.20127 -13.73899 -13.58587 -13.52186 -13.45823 -13.15149 -13.06378 -12.64217 -12.57031 -12.52218 -12.30756 -12.25597 -11.76714 -11.47492 -11.22700 -11.07358 -11.02978 -10.80747 -10.75417 -10.25984 -9.82579 -9.48403 -9.36288 -9.08150 -8.99788 -8.92429 -8.48001 -8.25829 -6.51470 -6.23190 -3.93648 1.21093 2.33687 2.49509 2.95302 3.02082 3.11828 3.16499 3.21597 3.27442 3.31337 3.67866 4.19211 4.36625 4.49203 4.53418 4.71750 4.86801 4.92037 5.00174 5.11512 5.12420 5.14423 5.16572 5.22369 5.30334 5.39241 5.43166 5.59214 5.77189 5.83235 5.84209 5.87524 5.94408 6.02997 6.10814 6.12211 6.22285 6.48441 6.55872 6.62317 6.71550 6.92078 7.21731 7.58380 7.63723 7.91370 8.33895 8.56186 9.22541 10.84159 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010425 B = 0.002736 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.153137 B =10230.125199 C =12368.507120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.134 3.866 4 H 0.097 0.903 5 C 0.116 3.884 6 N -0.717 5.717 7 C 0.591 3.409 8 O -0.554 6.554 9 C -0.058 4.058 10 C -0.135 4.135 11 C -0.206 4.206 12 C 0.014 3.986 13 N -0.413 5.413 14 C 0.070 3.930 15 N -0.737 5.737 16 C 0.533 3.467 17 O -0.508 6.508 18 C -0.155 4.155 19 S -0.058 6.058 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.408 0.592 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.169 0.831 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.398 0.602 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.264 -4.537 -7.634 24.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.029 3.971 4 H 0.115 0.885 5 C -0.008 4.008 6 N -0.369 5.369 7 C 0.380 3.620 8 O -0.434 6.434 9 C -0.171 4.171 10 C -0.162 4.162 11 C -0.230 4.230 12 C -0.122 4.122 13 N -0.085 5.085 14 C -0.072 4.072 15 N -0.392 5.392 16 C 0.319 3.681 17 O -0.381 6.381 18 C -0.306 4.306 19 S 0.169 5.831 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.244 0.756 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.186 0.814 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.232 0.768 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 22.624 -5.483 -9.336 25.081 hybrid contribution 0.814 0.978 2.620 2.912 sum 23.438 -4.505 -6.716 24.794 Atomic orbital electron populations 1.21802 0.93958 1.00735 1.03884 1.21873 0.97844 0.94869 1.02199 1.21252 0.92152 0.94829 0.88891 0.88510 1.21707 0.92898 0.82906 1.03259 1.45621 1.06852 1.10329 1.74060 1.16960 0.82414 0.86590 0.76053 1.90781 1.55358 1.45859 1.51384 1.19995 0.84109 0.93937 1.19094 1.21456 0.99260 0.90995 1.04455 1.20886 0.91838 0.99406 1.10838 1.22053 0.99996 0.82248 1.07860 1.43839 1.05508 1.06291 1.52911 1.22216 0.86001 0.94907 1.04028 1.46129 1.17620 1.59348 1.16102 1.20265 0.80752 0.77472 0.89582 1.90722 1.50153 1.57290 1.39973 1.23550 1.07091 1.02814 0.97130 1.85371 1.06606 1.70487 1.20639 1.22864 1.04075 1.41830 0.99616 0.90970 1.24982 0.94840 0.95570 0.98152 1.70010 1.05137 1.40876 1.34268 0.86182 0.77576 0.79412 0.82423 1.20249 1.20769 1.19708 0.91978 0.93574 0.91717 0.91172 0.91680 0.90587 0.89910 0.75582 0.83658 0.83785 0.81397 0.90626 0.89932 0.88301 0.76754 0.89340 0.89271 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.52 37.15 0.32 -1.60 16 2 C -0.13 -1.28 5.61 -26.73 -0.15 -1.43 16 3 C 0.13 1.36 2.41 -67.93 -0.16 1.20 16 4 H 0.10 1.14 7.57 -51.93 -0.39 0.75 16 5 C 0.12 1.04 5.24 -4.04 -0.02 1.02 16 6 N -0.72 -6.97 5.37 -61.62 -0.33 -7.30 16 7 C 0.59 6.90 7.78 -12.85 -0.10 6.80 16 8 O -0.55 -7.62 14.80 5.19 0.08 -7.54 16 9 C -0.06 -0.65 6.89 -81.98 -0.56 -1.21 16 10 C -0.14 -1.40 10.35 -39.12 -0.40 -1.80 16 11 C -0.21 -1.92 10.81 -39.98 -0.43 -2.35 16 12 C 0.01 0.11 11.37 -16.91 -0.19 -0.08 16 13 N -0.41 -4.00 3.16 -120.24 -0.38 -4.38 16 14 C 0.07 0.51 10.44 59.85 0.62 1.13 16 15 N -0.74 -8.50 4.47 -53.80 -0.24 -8.74 16 16 C 0.53 8.81 6.43 -10.99 -0.07 8.74 16 17 O -0.51 -10.13 13.01 5.56 0.07 -10.06 16 18 C -0.16 -2.93 6.16 36.00 0.22 -2.71 16 19 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 20 C -0.54 -14.93 9.50 30.94 0.29 -14.64 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.79 13.22 55.49 0.73 -25.05 16 24 Si 0.92 21.16 29.55 -169.99 -5.02 16.13 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 H 0.06 0.89 7.85 -51.93 -0.41 0.48 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.03 5.66 -51.93 -0.29 0.74 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.41 3.78 7.05 -40.82 -0.29 3.50 16 36 H 0.15 1.33 7.45 -52.49 -0.39 0.94 16 37 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 38 H 0.17 0.83 8.06 -52.48 -0.42 0.41 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.37 8.13 -51.93 -0.42 -0.05 16 41 H 0.10 0.87 6.61 -51.93 -0.34 0.53 16 42 H 0.40 3.82 8.60 -40.82 -0.35 3.47 16 43 H 0.09 1.58 8.14 -51.91 -0.42 1.15 16 44 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 388.76 15.07 5.86 5.86 Total: -1.00 -35.08 388.76 -8.85 -43.93 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.66 Total: 5.81 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -0.74 Total: -4.94 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.22 Total: -45.47 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: 0.15 Total: -17.61 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.08 -8.85 -43.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356868792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.351 kcal (2) G-P(sol) polarization free energy of solvation -35.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds