Wall clock time and date at job start Wed Apr 1 2020 00:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47354 * 2 1 4 4 H 1.08992 * 109.47282 * 305.00945 * 3 2 1 5 5 C 1.53000 * 109.47402 * 185.00231 * 3 2 1 6 6 N 1.46501 * 109.47062 * 185.00517 * 5 3 2 7 7 C 1.34780 * 119.99834 * 179.97438 * 6 5 3 8 8 O 1.21694 * 120.00111 * 355.23055 * 7 6 5 9 9 C 1.46677 * 119.99836 * 175.22976 * 7 6 5 10 10 C 1.37873 * 126.23234 * 358.04114 * 9 7 6 11 11 C 1.39837 * 107.08450 * 180.02562 * 10 9 7 12 12 C 1.35451 * 107.86346 * 0.02562 * 11 10 9 13 13 N 1.35530 * 108.87460 * 359.73264 * 12 11 10 14 14 C 1.46500 * 125.68444 * 180.29883 * 13 12 11 15 15 N 1.46506 * 109.46518 * 65.00413 * 3 2 1 16 16 C 1.34780 * 119.99883 * 274.72354 * 15 3 2 17 17 O 1.21282 * 119.99658 * 0.27854 * 16 15 3 18 18 C 1.50697 * 120.00254 * 180.28195 * 16 15 3 19 19 S 1.80997 * 109.47207 * 180.02562 * 18 16 15 20 20 C 1.76208 * 99.99924 * 179.97438 * 19 18 16 21 21 H 1.07996 * 119.99874 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99920 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00271 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99904 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47347 * 89.99835 * 24 22 20 26 26 H 1.48498 * 109.47206 * 210.00013 * 24 22 20 27 27 H 1.48502 * 109.47096 * 330.00063 * 24 22 20 28 28 H 1.09000 * 109.47154 * 59.99374 * 1 2 3 29 29 H 1.09001 * 109.47138 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47133 * 299.99432 * 1 2 3 31 31 H 1.09006 * 109.47133 * 240.00568 * 2 1 3 32 32 H 1.08994 * 109.47476 * 120.00365 * 2 1 3 33 33 H 1.09002 * 109.47101 * 305.00165 * 5 3 2 34 34 H 1.08995 * 109.46949 * 64.99913 * 5 3 2 35 35 H 0.97000 * 120.00226 * 359.97438 * 6 5 3 36 36 H 1.07993 * 126.46074 * 359.97382 * 10 9 7 37 37 H 1.08003 * 126.06899 * 180.02562 * 11 10 9 38 38 H 1.08006 * 125.56440 * 179.97438 * 12 11 10 39 39 H 1.09002 * 109.47238 * 265.97689 * 14 13 12 40 40 H 1.09000 * 109.46398 * 25.97394 * 14 13 12 41 41 H 1.08994 * 109.47289 * 145.97297 * 14 13 12 42 42 H 0.96991 * 120.00481 * 95.00393 * 15 3 2 43 43 H 1.09002 * 109.46671 * 299.99598 * 18 16 15 44 44 H 1.08998 * 109.47206 * 59.99414 * 18 16 15 45 45 H 0.96997 * 120.00233 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8416 5 6 3.5648 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0059 7 6 5.3858 3.0629 -0.0858 8 8 6.1727 2.1385 -0.1703 9 6 5.8767 4.4450 -0.0708 10 6 5.1023 5.5844 -0.0179 11 6 5.9764 6.6759 -0.0235 12 6 7.2414 6.1949 -0.0791 13 7 7.1948 4.8406 -0.1027 14 6 8.3541 3.9465 -0.1560 15 7 1.6525 2.0974 1.2519 16 6 0.4372 2.6691 1.3653 17 8 -0.3373 2.6371 0.4326 18 6 0.0409 3.3483 2.6508 19 16 -1.6356 4.0114 2.4909 20 6 -1.8350 4.7276 4.0885 21 1 -1.0352 4.6657 4.8116 22 6 -3.0199 5.3711 4.4175 23 7 -3.9945 5.4469 3.5360 24 14 -3.2310 6.1309 6.1109 25 1 -2.7633 7.5401 6.0830 26 1 -4.6649 6.0928 6.4953 27 1 -2.4326 5.3640 7.1006 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.9954 0.8311 0.6658 34 1 3.8498 1.0377 -1.0961 35 1 3.4410 3.5484 0.1310 36 1 4.0238 5.6262 0.0199 37 1 5.6931 7.7176 0.0105 38 1 8.1406 6.7929 -0.0974 39 1 8.5652 3.6866 -1.1933 40 1 9.2199 4.4482 0.2763 41 1 8.1398 3.0397 0.4094 42 1 2.2719 2.1230 1.9978 43 1 0.0693 2.6262 3.4669 44 1 0.7353 4.1617 2.8611 45 1 -4.8227 5.8963 3.7661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356868792.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:15 Heat of formation + Delta-G solvation = -54.851925 kcal Electronic energy + Delta-G solvation = -26601.313288 eV Core-core repulsion = 22744.777815 eV Total energy + Delta-G solvation = -3856.535473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 8.82 seconds Orbital eigenvalues (eV) -42.32546 -41.07592 -40.00848 -37.54547 -35.18337 -34.56571 -33.67729 -33.56870 -31.14618 -30.42190 -28.83301 -27.62514 -27.36970 -24.92880 -23.06063 -22.53558 -21.55742 -21.41513 -20.59714 -19.80135 -18.93696 -17.93314 -17.39016 -17.18881 -16.86145 -16.72866 -16.62305 -16.29120 -16.00823 -15.57122 -15.05220 -14.87656 -14.65305 -14.58929 -14.39162 -14.22531 -14.12998 -13.83708 -13.48354 -13.27874 -13.19668 -13.14325 -12.98299 -12.89245 -12.85652 -12.62338 -12.46840 -12.14967 -11.76325 -11.68876 -11.14988 -11.12570 -10.82987 -10.25905 -10.23556 -10.04499 -9.69753 -9.19058 -8.62097 -8.33157 -6.09488 0.44080 1.29139 1.42759 1.48296 1.58239 1.64312 1.70119 1.80418 2.23938 2.30183 2.33417 2.42401 3.01108 3.34808 3.52780 3.73839 3.98002 3.99688 4.02991 4.14386 4.18520 4.34742 4.38519 4.40960 4.46944 4.53371 4.54414 4.57312 4.63941 4.72460 4.84963 4.94045 5.07470 5.14654 5.19447 5.26711 5.30408 5.43780 5.50352 5.55733 5.78122 5.99623 6.21450 6.30444 6.40375 6.52303 7.07390 7.08830 7.30568 8.75736 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010425 B = 0.002736 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.153137 B =10230.125199 C =12368.507120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.141 3.859 4 H 0.082 0.918 5 C 0.125 3.875 6 N -0.711 5.711 7 C 0.590 3.410 8 O -0.580 6.580 9 C -0.089 4.089 10 C -0.143 4.143 11 C -0.226 4.226 12 C 0.026 3.974 13 N -0.419 5.419 14 C 0.068 3.932 15 N -0.712 5.712 16 C 0.540 3.460 17 O -0.546 6.546 18 C -0.133 4.133 19 S -0.142 6.142 20 C -0.546 4.546 21 H 0.080 0.920 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.995 3.005 25 H -0.268 1.268 26 H -0.279 1.279 27 H -0.260 1.260 28 H 0.042 0.958 29 H 0.057 0.943 30 H 0.032 0.968 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.410 0.590 36 H 0.148 0.852 37 H 0.158 0.842 38 H 0.205 0.795 39 H 0.078 0.922 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.412 0.588 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.970 -4.472 -6.580 27.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C 0.036 3.964 4 H 0.100 0.900 5 C 0.001 3.999 6 N -0.363 5.363 7 C 0.379 3.621 8 O -0.462 6.462 9 C -0.201 4.201 10 C -0.170 4.170 11 C -0.250 4.250 12 C -0.110 4.110 13 N -0.092 5.092 14 C -0.072 4.072 15 N -0.367 5.367 16 C 0.325 3.675 17 O -0.423 6.423 18 C -0.284 4.284 19 S 0.085 5.915 20 C -0.694 4.694 21 H 0.098 0.902 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.817 3.183 25 H -0.193 1.193 26 H -0.204 1.204 27 H -0.184 1.184 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.246 0.754 36 H 0.166 0.834 37 H 0.175 0.825 38 H 0.222 0.778 39 H 0.097 0.903 40 H 0.132 0.868 41 H 0.099 0.901 42 H 0.249 0.751 43 H 0.121 0.879 44 H 0.126 0.874 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 25.367 -5.442 -8.274 27.232 hybrid contribution 0.078 0.928 2.222 2.409 sum 25.445 -4.515 -6.052 26.541 Atomic orbital electron populations 1.21734 0.96371 1.00662 1.01357 1.21850 0.95397 0.94689 1.04211 1.21284 0.93015 0.94814 0.87289 0.89995 1.21674 0.91358 0.82679 1.04144 1.45599 1.06450 1.10724 1.73482 1.17099 0.82598 0.86705 0.75682 1.90760 1.55972 1.46561 1.52898 1.20065 0.85208 0.93770 1.21097 1.21659 0.99715 0.91413 1.04242 1.21196 0.92298 0.99920 1.11551 1.22667 1.01017 0.81910 1.05415 1.44112 1.05511 1.07101 1.52512 1.22327 0.86253 0.94429 1.04231 1.45840 1.15915 1.57702 1.17215 1.19838 0.81833 0.77603 0.88188 1.90723 1.51689 1.58987 1.40881 1.23396 1.02315 1.03618 0.99100 1.85504 1.13121 1.71527 1.21371 1.23204 1.04548 1.41744 0.99899 0.90168 1.26072 0.94400 0.95984 1.02593 1.70170 1.05805 1.42035 1.36707 0.85007 0.77695 0.78648 0.76975 1.19294 1.20401 1.18354 0.93903 0.92390 0.94842 0.88627 0.90167 0.89633 0.89007 0.75352 0.83402 0.82460 0.77847 0.90336 0.86754 0.90083 0.75101 0.87887 0.87414 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 8.52 71.98 0.61 -3.11 16 2 C -0.12 -2.19 5.61 30.59 0.17 -2.02 16 3 C 0.14 2.66 2.41 44.99 0.11 2.77 16 4 H 0.08 1.89 7.57 -2.39 -0.02 1.87 16 5 C 0.13 1.98 5.24 86.38 0.45 2.43 16 6 N -0.71 -13.01 5.37 -467.08 -2.51 -15.52 16 7 C 0.59 13.31 7.78 86.45 0.67 13.98 16 8 O -0.58 -15.52 14.80 -4.33 -0.06 -15.58 16 9 C -0.09 -1.90 6.89 40.35 0.28 -1.63 16 10 C -0.14 -2.87 10.35 22.57 0.23 -2.63 16 11 C -0.23 -3.86 10.81 22.01 0.24 -3.63 16 12 C 0.03 0.37 11.37 83.48 0.95 1.32 16 13 N -0.42 -7.46 3.16 -534.32 -1.69 -9.15 16 14 C 0.07 0.88 10.44 127.77 1.33 2.21 16 15 N -0.71 -15.47 4.47 -442.52 -1.98 -17.45 16 16 C 0.54 17.76 6.43 87.66 0.56 18.32 16 17 O -0.55 -22.42 13.01 -3.04 -0.04 -22.46 16 18 C -0.13 -4.97 6.16 71.23 0.44 -4.54 16 19 S -0.14 -7.64 20.57 -56.49 -1.16 -8.80 16 20 C -0.55 -30.68 9.50 67.95 0.65 -30.04 16 21 H 0.08 4.21 7.80 -2.91 -0.02 4.18 16 22 C 0.01 0.81 5.49 84.86 0.47 1.27 16 23 N -0.91 -55.37 13.22 21.65 0.29 -55.08 16 24 Si 0.99 43.27 29.55 68.60 2.03 45.29 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 27 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 28 H 0.04 1.25 7.85 -2.39 -0.02 1.23 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.03 1.07 5.66 -2.38 -0.01 1.05 16 31 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.41 7.24 7.05 -92.71 -0.65 6.58 16 36 H 0.15 2.68 7.45 -2.91 -0.02 2.66 16 37 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.20 1.24 8.06 -2.91 -0.02 1.21 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.11 0.69 8.13 -2.39 -0.02 0.67 16 41 H 0.08 1.37 6.61 -2.39 -0.02 1.35 16 42 H 0.41 6.96 8.60 -92.72 -0.80 6.16 16 43 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 44 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 45 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -79.05 388.76 1.61 -77.45 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: -0.43 Total: 26.57 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 7.16 Total: -5.28 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -5.89 Total: -97.20 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -0.10 Total: -38.04 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -7.64 SS G_CDS: -1.16 Total: -8.80 kcal Total: -79.05 1.61 -77.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356868792.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.596 kcal (2) G-P(sol) polarization free energy of solvation -79.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.82 seconds