Wall clock time and date at job start Wed Apr 1 2020 01:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47043 * 2 1 4 4 H 1.09001 * 109.47381 * 304.99311 * 3 2 1 5 5 C 1.53000 * 109.47046 * 184.99775 * 3 2 1 6 6 N 1.46503 * 109.47339 * 184.99906 * 5 3 2 7 7 C 1.34775 * 120.00239 * 180.02562 * 6 5 3 8 8 O 1.21285 * 120.00044 * 359.72533 * 7 6 5 9 9 C 1.50699 * 120.00260 * 179.72206 * 7 6 5 10 10 S 1.81002 * 109.47341 * 179.97438 * 9 7 6 11 11 C 1.76200 * 99.99825 * 180.02562 * 10 9 7 12 12 H 1.07996 * 120.00072 * 359.97438 * 11 10 9 13 13 C 1.38798 * 119.99436 * 180.02562 * 11 10 9 14 14 N 1.31627 * 120.00584 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99769 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46910 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46839 * 119.99730 * 15 13 11 18 18 H 1.48493 * 109.47439 * 239.99940 * 15 13 11 19 19 N 1.46494 * 109.47672 * 64.99843 * 3 2 1 20 20 C 1.34783 * 119.99871 * 275.00403 * 19 3 2 21 21 O 1.21693 * 120.00145 * 354.69590 * 20 19 3 22 22 C 1.46677 * 119.99861 * 174.70159 * 20 19 3 23 23 C 1.37878 * 126.23447 * 4.99000 * 22 20 19 24 24 C 1.39835 * 107.08384 * 179.97438 * 23 22 20 25 25 C 1.35450 * 107.86664 * 359.97438 * 24 23 22 26 26 N 1.35536 * 108.87153 * 359.76484 * 25 24 23 27 27 C 1.46499 * 125.67617 * 180.26351 * 26 25 24 28 28 H 1.08999 * 109.47180 * 300.00577 * 1 2 3 29 29 H 1.09007 * 109.46930 * 60.00202 * 1 2 3 30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47207 * 239.99856 * 2 1 3 32 32 H 1.08994 * 109.47039 * 119.99502 * 2 1 3 33 33 H 1.09003 * 109.47293 * 65.00117 * 5 3 2 34 34 H 1.09001 * 109.47552 * 305.00059 * 5 3 2 35 35 H 0.97005 * 119.99670 * 359.72198 * 6 5 3 36 36 H 1.09000 * 109.47375 * 300.00325 * 9 7 6 37 37 H 1.09005 * 109.47017 * 60.00142 * 9 7 6 38 38 H 0.97002 * 120.00610 * 180.02562 * 14 13 11 39 39 H 0.97000 * 120.00294 * 94.99153 * 19 3 2 40 40 H 1.08000 * 126.45625 * 359.92433 * 23 22 20 41 41 H 1.07996 * 126.06693 * 180.02562 * 24 23 22 42 42 H 1.08003 * 125.56564 * 179.97438 * 25 24 23 43 43 H 1.08999 * 109.47107 * 274.99633 * 27 26 25 44 44 H 1.08998 * 109.47532 * 34.99681 * 27 26 25 45 45 H 1.08999 * 109.46677 * 154.99944 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0631 2.8168 -0.0059 7 6 5.3857 3.0630 -0.0868 8 8 6.1639 2.1478 -0.2537 9 6 5.8977 4.4755 0.0301 10 16 7.7018 4.4775 -0.1169 11 6 8.0205 6.2022 0.0516 12 1 7.2015 6.8912 0.1958 13 6 9.3243 6.6754 -0.0020 14 7 10.3224 5.8358 -0.1793 15 14 9.6623 8.5039 0.1759 16 1 8.3797 9.2284 0.3632 17 1 10.5364 8.7333 1.3544 18 1 10.3396 9.0036 -1.0475 19 7 1.6525 2.0975 1.2517 20 6 0.4351 2.6644 1.3668 21 8 -0.3050 2.7176 0.4023 22 6 0.0024 3.2174 2.6546 23 6 0.7664 3.3134 3.7983 24 6 -0.0374 3.8991 4.7813 25 6 -1.2512 4.1456 4.2331 26 7 -1.2383 3.7411 2.9396 27 6 -2.3593 3.8414 2.0018 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.8499 1.0377 -1.0960 34 1 3.9954 0.8311 0.6660 35 1 3.4407 3.5488 0.1271 36 1 5.4673 5.0850 -0.7645 37 1 5.6121 4.8866 0.9985 38 1 11.2336 6.1665 -0.2164 39 1 2.2719 2.1232 1.9977 40 1 1.7921 2.9955 3.9135 41 1 0.2576 4.1170 5.7971 42 1 -2.0910 4.5946 4.7425 43 1 -3.0107 2.9755 2.1203 44 1 -2.9237 4.7512 2.2061 45 1 -1.9776 3.8720 0.9813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356869668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:32 Heat of formation + Delta-G solvation = -30.554906 kcal Electronic energy + Delta-G solvation = -26581.262226 eV Core-core repulsion = 22725.780352 eV Total energy + Delta-G solvation = -3855.481875 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.70422 -39.99649 -38.97354 -36.64163 -33.92414 -33.41434 -32.52690 -32.42886 -30.22684 -29.43628 -27.76144 -26.80433 -25.49060 -23.70970 -23.16276 -21.33650 -20.68165 -20.31677 -19.93154 -18.27220 -17.78605 -16.87186 -16.40926 -16.17198 -16.01142 -15.54507 -15.16673 -15.08090 -14.80374 -14.51136 -13.97020 -13.80339 -13.68447 -13.58799 -13.53738 -13.35215 -12.95032 -12.66894 -12.65735 -12.59459 -12.36242 -12.29042 -11.81731 -11.76761 -11.41031 -11.13242 -11.06917 -11.01977 -10.75428 -10.21989 -9.81047 -9.50375 -9.36131 -9.08176 -9.05705 -8.95860 -8.53737 -8.23817 -6.50228 -6.21916 -3.92367 1.16161 2.28715 2.43891 2.95046 3.03864 3.08277 3.12610 3.21806 3.28512 3.33229 3.69161 4.20290 4.30681 4.48314 4.51084 4.67132 4.71143 4.80920 4.86721 5.07671 5.09239 5.11716 5.13039 5.13731 5.24711 5.29574 5.48835 5.49918 5.61143 5.72460 5.74908 5.76326 5.83438 5.88220 5.89536 6.10035 6.13856 6.16994 6.43158 6.53479 6.66666 6.86934 7.17681 7.59994 7.64511 7.88726 8.35559 8.56790 9.23743 10.85546 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012209 B = 0.002464 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.763174 B =11362.986557 C =13022.888990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.137 3.863 4 H 0.099 0.901 5 C 0.113 3.887 6 N -0.739 5.739 7 C 0.533 3.467 8 O -0.516 6.516 9 C -0.154 4.154 10 S -0.060 6.060 11 C -0.534 4.534 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.714 5.714 20 C 0.594 3.406 21 O -0.546 6.546 22 C -0.057 4.057 23 C -0.138 4.138 24 C -0.207 4.207 25 C 0.014 3.986 26 N -0.411 5.411 27 C 0.061 3.939 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.399 0.601 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.268 0.732 39 H 0.406 0.594 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.168 0.832 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.051 -7.704 6.845 28.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.032 3.968 4 H 0.117 0.883 5 C -0.012 4.012 6 N -0.395 5.395 7 C 0.319 3.681 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.366 5.366 20 C 0.383 3.617 21 O -0.425 6.425 22 C -0.170 4.170 23 C -0.164 4.164 24 C -0.230 4.230 25 C -0.122 4.122 26 N -0.083 5.083 27 C -0.080 4.080 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.233 0.767 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.241 0.759 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.185 0.815 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -26.369 -9.238 5.555 28.488 hybrid contribution -0.738 2.642 0.886 2.882 sum -27.108 -6.596 6.441 28.633 Atomic orbital electron populations 1.21759 0.94796 1.00831 1.02691 1.21892 0.97055 0.95095 1.03082 1.21364 0.93815 0.94240 0.87352 0.88309 1.21595 0.91245 0.84822 1.03507 1.45997 1.07856 1.08790 1.76843 1.20316 0.81322 0.91155 0.75324 1.90710 1.55400 1.46137 1.46759 1.23533 1.06820 0.95142 1.04942 1.85384 0.91957 1.10926 1.95065 1.22905 0.95446 0.92353 1.57564 0.90882 1.24993 0.95081 0.98962 0.94570 1.70023 0.99451 1.34474 1.46355 0.86116 0.78422 0.83012 0.77950 1.19611 1.20560 1.20573 1.45726 1.16092 1.57619 1.17171 1.16904 0.81692 0.76973 0.86125 1.90771 1.53778 1.58625 1.39330 1.20025 0.87754 1.12978 0.96270 1.21413 0.99542 1.03511 0.91966 1.20863 0.93735 1.07979 1.00470 1.22050 1.00595 1.05479 0.84062 1.43843 1.10331 1.44145 1.10025 1.22347 0.87749 1.02747 0.95168 0.92896 0.92095 0.93279 0.90357 0.91275 0.89853 0.90795 0.76668 0.89248 0.89200 0.92235 0.75872 0.83779 0.83902 0.81459 0.90808 0.90059 0.87235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.58 37.16 0.32 -0.93 16 2 C -0.13 -1.02 5.61 -26.73 -0.15 -1.17 16 3 C 0.14 1.18 2.42 -67.94 -0.16 1.01 16 4 H 0.10 0.97 7.51 -51.93 -0.39 0.58 16 5 C 0.11 1.17 5.23 -4.04 -0.02 1.15 16 6 N -0.74 -9.32 5.39 -60.29 -0.32 -9.64 16 7 C 0.53 9.59 7.85 -10.99 -0.09 9.50 16 8 O -0.52 -11.32 15.86 5.55 0.09 -11.23 16 9 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 10 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 11 C -0.53 -15.19 9.50 30.94 0.29 -14.90 16 12 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 15 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 19 N -0.71 -6.02 4.46 -55.12 -0.25 -6.27 16 20 C 0.59 6.09 6.14 -12.85 -0.08 6.01 16 21 O -0.55 -6.62 12.13 5.20 0.06 -6.55 16 22 C -0.06 -0.57 6.89 -81.98 -0.56 -1.13 16 23 C -0.14 -1.24 10.36 -39.12 -0.41 -1.64 16 24 C -0.21 -1.71 10.81 -39.98 -0.43 -2.14 16 25 C 0.01 0.10 11.38 -16.91 -0.19 -0.09 16 26 N -0.41 -3.64 3.16 -120.24 -0.38 -4.02 16 27 C 0.06 0.41 10.76 59.85 0.64 1.06 16 28 H 0.05 0.53 5.76 -51.93 -0.30 0.23 16 29 H 0.06 0.59 7.92 -51.92 -0.41 0.18 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.40 4.33 8.14 -40.82 -0.33 4.00 16 36 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 37 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.41 3.00 7.50 -40.82 -0.31 2.70 16 40 H 0.14 1.05 7.45 -52.49 -0.39 0.66 16 41 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.11 0.94 5.97 -51.93 -0.31 0.63 16 LS Contribution 388.60 15.07 5.86 5.86 Total: -1.00 -35.87 388.60 -8.79 -44.66 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.63 Total: 4.14 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.71 Total: -4.12 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: -0.22 Total: -45.31 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: 0.15 Total: -17.79 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.87 -8.79 -44.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356869668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.107 kcal (2) G-P(sol) polarization free energy of solvation -35.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds