Wall clock time and date at job start Wed Apr 1 2020 01:15:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52996 * 109.47043 * 2 1
4 4 H 1.09001 * 109.47381 * 304.99311 * 3 2 1
5 5 C 1.53000 * 109.47046 * 184.99775 * 3 2 1
6 6 N 1.46503 * 109.47339 * 184.99906 * 5 3 2
7 7 C 1.34775 * 120.00239 * 180.02562 * 6 5 3
8 8 O 1.21285 * 120.00044 * 359.72533 * 7 6 5
9 9 C 1.50699 * 120.00260 * 179.72206 * 7 6 5
10 10 S 1.81002 * 109.47341 * 179.97438 * 9 7 6
11 11 C 1.76200 * 99.99825 * 180.02562 * 10 9 7
12 12 H 1.07996 * 120.00072 * 359.97438 * 11 10 9
13 13 C 1.38798 * 119.99436 * 180.02562 * 11 10 9
14 14 N 1.31627 * 120.00584 * 0.02562 * 13 11 10
15 15 Si 1.86806 * 119.99769 * 179.97438 * 13 11 10
16 16 H 1.48494 * 109.46910 * 0.02562 * 15 13 11
17 17 H 1.48502 * 109.46839 * 119.99730 * 15 13 11
18 18 H 1.48493 * 109.47439 * 239.99940 * 15 13 11
19 19 N 1.46494 * 109.47672 * 64.99843 * 3 2 1
20 20 C 1.34783 * 119.99871 * 275.00403 * 19 3 2
21 21 O 1.21693 * 120.00145 * 354.69590 * 20 19 3
22 22 C 1.46677 * 119.99861 * 174.70159 * 20 19 3
23 23 C 1.37878 * 126.23447 * 4.99000 * 22 20 19
24 24 C 1.39835 * 107.08384 * 179.97438 * 23 22 20
25 25 C 1.35450 * 107.86664 * 359.97438 * 24 23 22
26 26 N 1.35536 * 108.87153 * 359.76484 * 25 24 23
27 27 C 1.46499 * 125.67617 * 180.26351 * 26 25 24
28 28 H 1.08999 * 109.47180 * 300.00577 * 1 2 3
29 29 H 1.09007 * 109.46930 * 60.00202 * 1 2 3
30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3
31 31 H 1.08993 * 109.47207 * 239.99856 * 2 1 3
32 32 H 1.08994 * 109.47039 * 119.99502 * 2 1 3
33 33 H 1.09003 * 109.47293 * 65.00117 * 5 3 2
34 34 H 1.09001 * 109.47552 * 305.00059 * 5 3 2
35 35 H 0.97005 * 119.99670 * 359.72198 * 6 5 3
36 36 H 1.09000 * 109.47375 * 300.00325 * 9 7 6
37 37 H 1.09005 * 109.47017 * 60.00142 * 9 7 6
38 38 H 0.97002 * 120.00610 * 180.02562 * 14 13 11
39 39 H 0.97000 * 120.00294 * 94.99153 * 19 3 2
40 40 H 1.08000 * 126.45625 * 359.92433 * 23 22 20
41 41 H 1.07996 * 126.06693 * 180.02562 * 24 23 22
42 42 H 1.08003 * 125.56564 * 179.97438 * 25 24 23
43 43 H 1.08999 * 109.47107 * 274.99633 * 27 26 25
44 44 H 1.08998 * 109.47532 * 34.99681 * 27 26 25
45 45 H 1.08999 * 109.46677 * 154.99944 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6055 1.9815 -0.8419
5 6 3.5648 1.4443 -0.1257
6 7 4.0631 2.8168 -0.0059
7 6 5.3857 3.0630 -0.0868
8 8 6.1639 2.1478 -0.2537
9 6 5.8977 4.4755 0.0301
10 16 7.7018 4.4775 -0.1169
11 6 8.0205 6.2022 0.0516
12 1 7.2015 6.8912 0.1958
13 6 9.3243 6.6754 -0.0020
14 7 10.3224 5.8358 -0.1793
15 14 9.6623 8.5039 0.1759
16 1 8.3797 9.2284 0.3632
17 1 10.5364 8.7333 1.3544
18 1 10.3396 9.0036 -1.0475
19 7 1.6525 2.0975 1.2517
20 6 0.4351 2.6644 1.3668
21 8 -0.3050 2.7176 0.4023
22 6 0.0024 3.2174 2.6546
23 6 0.7664 3.3134 3.7983
24 6 -0.0374 3.8991 4.7813
25 6 -1.2512 4.1456 4.2331
26 7 -1.2383 3.7411 2.9396
27 6 -2.3593 3.8414 2.0018
28 1 -0.3633 0.5139 0.8899
29 1 -0.3633 0.5138 -0.8901
30 1 -0.3634 -1.0276 0.0005
31 1 1.8933 -0.5138 -0.8899
32 1 1.8933 -0.5137 0.8900
33 1 3.8499 1.0377 -1.0960
34 1 3.9954 0.8311 0.6660
35 1 3.4407 3.5488 0.1271
36 1 5.4673 5.0850 -0.7645
37 1 5.6121 4.8866 0.9985
38 1 11.2336 6.1665 -0.2164
39 1 2.2719 2.1232 1.9977
40 1 1.7921 2.9955 3.9135
41 1 0.2576 4.1170 5.7971
42 1 -2.0910 4.5946 4.7425
43 1 -3.0107 2.9755 2.1203
44 1 -2.9237 4.7512 2.2061
45 1 -1.9776 3.8720 0.9813
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001356869668.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 01:15:32
Heat of formation + Delta-G solvation = -30.554906 kcal
Electronic energy + Delta-G solvation = -26581.262226 eV
Core-core repulsion = 22725.780352 eV
Total energy + Delta-G solvation = -3855.481875 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.70422 -39.99649 -38.97354 -36.64163 -33.92414 -33.41434 -32.52690 -32.42886
-30.22684 -29.43628 -27.76144 -26.80433 -25.49060 -23.70970 -23.16276 -21.33650
-20.68165 -20.31677 -19.93154 -18.27220 -17.78605 -16.87186 -16.40926 -16.17198
-16.01142 -15.54507 -15.16673 -15.08090 -14.80374 -14.51136 -13.97020 -13.80339
-13.68447 -13.58799 -13.53738 -13.35215 -12.95032 -12.66894 -12.65735 -12.59459
-12.36242 -12.29042 -11.81731 -11.76761 -11.41031 -11.13242 -11.06917 -11.01977
-10.75428 -10.21989 -9.81047 -9.50375 -9.36131 -9.08176 -9.05705 -8.95860
-8.53737 -8.23817 -6.50228 -6.21916 -3.92367 1.16161 2.28715 2.43891
2.95046 3.03864 3.08277 3.12610 3.21806 3.28512 3.33229 3.69161
4.20290 4.30681 4.48314 4.51084 4.67132 4.71143 4.80920 4.86721
5.07671 5.09239 5.11716 5.13039 5.13731 5.24711 5.29574 5.48835
5.49918 5.61143 5.72460 5.74908 5.76326 5.83438 5.88220 5.89536
6.10035 6.13856 6.16994 6.43158 6.53479 6.66666 6.86934 7.17681
7.59994 7.64511 7.88726 8.35559 8.56790 9.23743 10.85546
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.012209 B = 0.002464 C = 0.002150
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2292.763174 B =11362.986557 C =13022.888990
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.132 4.132
3 C 0.137 3.863
4 H 0.099 0.901
5 C 0.113 3.887
6 N -0.739 5.739
7 C 0.533 3.467
8 O -0.516 6.516
9 C -0.154 4.154
10 S -0.060 6.060
11 C -0.534 4.534
12 H 0.073 0.927
13 C 0.073 3.927
14 N -0.868 5.868
15 Si 0.919 3.081
16 H -0.272 1.272
17 H -0.280 1.280
18 H -0.280 1.280
19 N -0.714 5.714
20 C 0.594 3.406
21 O -0.546 6.546
22 C -0.057 4.057
23 C -0.138 4.138
24 C -0.207 4.207
25 C 0.014 3.986
26 N -0.411 5.411
27 C 0.061 3.939
28 H 0.052 0.948
29 H 0.060 0.940
30 H 0.048 0.952
31 H 0.078 0.922
32 H 0.069 0.931
33 H 0.083 0.917
34 H 0.074 0.926
35 H 0.399 0.601
36 H 0.089 0.911
37 H 0.090 0.910
38 H 0.268 0.732
39 H 0.406 0.594
40 H 0.144 0.856
41 H 0.143 0.857
42 H 0.168 0.832
43 H 0.073 0.927
44 H 0.081 0.919
45 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.051 -7.704 6.845 28.947
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.171 4.171
3 C 0.032 3.968
4 H 0.117 0.883
5 C -0.012 4.012
6 N -0.395 5.395
7 C 0.319 3.681
8 O -0.390 6.390
9 C -0.304 4.304
10 S 0.167 5.833
11 C -0.683 4.683
12 H 0.091 0.909
13 C -0.136 4.136
14 N -0.503 5.503
15 Si 0.745 3.255
16 H -0.196 1.196
17 H -0.206 1.206
18 H -0.206 1.206
19 N -0.366 5.366
20 C 0.383 3.617
21 O -0.425 6.425
22 C -0.170 4.170
23 C -0.164 4.164
24 C -0.230 4.230
25 C -0.122 4.122
26 N -0.083 5.083
27 C -0.080 4.080
28 H 0.071 0.929
29 H 0.079 0.921
30 H 0.067 0.933
31 H 0.096 0.904
32 H 0.087 0.913
33 H 0.101 0.899
34 H 0.092 0.908
35 H 0.233 0.767
36 H 0.108 0.892
37 H 0.108 0.892
38 H 0.078 0.922
39 H 0.241 0.759
40 H 0.162 0.838
41 H 0.161 0.839
42 H 0.185 0.815
43 H 0.092 0.908
44 H 0.099 0.901
45 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges -26.369 -9.238 5.555 28.488
hybrid contribution -0.738 2.642 0.886 2.882
sum -27.108 -6.596 6.441 28.633
Atomic orbital electron populations
1.21759 0.94796 1.00831 1.02691 1.21892 0.97055 0.95095 1.03082
1.21364 0.93815 0.94240 0.87352 0.88309 1.21595 0.91245 0.84822
1.03507 1.45997 1.07856 1.08790 1.76843 1.20316 0.81322 0.91155
0.75324 1.90710 1.55400 1.46137 1.46759 1.23533 1.06820 0.95142
1.04942 1.85384 0.91957 1.10926 1.95065 1.22905 0.95446 0.92353
1.57564 0.90882 1.24993 0.95081 0.98962 0.94570 1.70023 0.99451
1.34474 1.46355 0.86116 0.78422 0.83012 0.77950 1.19611 1.20560
1.20573 1.45726 1.16092 1.57619 1.17171 1.16904 0.81692 0.76973
0.86125 1.90771 1.53778 1.58625 1.39330 1.20025 0.87754 1.12978
0.96270 1.21413 0.99542 1.03511 0.91966 1.20863 0.93735 1.07979
1.00470 1.22050 1.00595 1.05479 0.84062 1.43843 1.10331 1.44145
1.10025 1.22347 0.87749 1.02747 0.95168 0.92896 0.92095 0.93279
0.90357 0.91275 0.89853 0.90795 0.76668 0.89248 0.89200 0.92235
0.75872 0.83779 0.83902 0.81459 0.90808 0.90059 0.87235
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.25 8.58 37.16 0.32 -0.93 16
2 C -0.13 -1.02 5.61 -26.73 -0.15 -1.17 16
3 C 0.14 1.18 2.42 -67.94 -0.16 1.01 16
4 H 0.10 0.97 7.51 -51.93 -0.39 0.58 16
5 C 0.11 1.17 5.23 -4.04 -0.02 1.15 16
6 N -0.74 -9.32 5.39 -60.29 -0.32 -9.64 16
7 C 0.53 9.59 7.85 -10.99 -0.09 9.50 16
8 O -0.52 -11.32 15.86 5.55 0.09 -11.23 16
9 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16
10 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16
11 C -0.53 -15.19 9.50 30.94 0.29 -14.90 16
12 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16
13 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16
14 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16
15 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16
16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16
17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
18 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16
19 N -0.71 -6.02 4.46 -55.12 -0.25 -6.27 16
20 C 0.59 6.09 6.14 -12.85 -0.08 6.01 16
21 O -0.55 -6.62 12.13 5.20 0.06 -6.55 16
22 C -0.06 -0.57 6.89 -81.98 -0.56 -1.13 16
23 C -0.14 -1.24 10.36 -39.12 -0.41 -1.64 16
24 C -0.21 -1.71 10.81 -39.98 -0.43 -2.14 16
25 C 0.01 0.10 11.38 -16.91 -0.19 -0.09 16
26 N -0.41 -3.64 3.16 -120.24 -0.38 -4.02 16
27 C 0.06 0.41 10.76 59.85 0.64 1.06 16
28 H 0.05 0.53 5.76 -51.93 -0.30 0.23 16
29 H 0.06 0.59 7.92 -51.92 -0.41 0.18 16
30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16
31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16
32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16
35 H 0.40 4.33 8.14 -40.82 -0.33 4.00 16
36 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16
37 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16
38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16
39 H 0.41 3.00 7.50 -40.82 -0.31 2.70 16
40 H 0.14 1.05 7.45 -52.49 -0.39 0.66 16
41 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16
42 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16
43 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16
44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16
45 H 0.11 0.94 5.97 -51.93 -0.31 0.63 16
LS Contribution 388.60 15.07 5.86 5.86
Total: -1.00 -35.87 388.60 -8.79 -44.66
By element:
Atomic # 1 Polarization: 10.78 SS G_CDS: -6.63 Total: 4.14 kcal
Atomic # 6 Polarization: -3.41 SS G_CDS: -0.71 Total: -4.12 kcal
Atomic # 7 Polarization: -45.09 SS G_CDS: -0.22 Total: -45.31 kcal
Atomic # 8 Polarization: -17.94 SS G_CDS: 0.15 Total: -17.79 kcal
Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal
Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -35.87 -8.79 -44.66 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001356869668.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.107 kcal
(2) G-P(sol) polarization free energy of solvation -35.871 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.764 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.662 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.555 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds