Wall clock time and date at job start Wed Apr 1 2020 01:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47043 * 2 1 4 4 H 1.09001 * 109.47381 * 304.99311 * 3 2 1 5 5 C 1.53000 * 109.47046 * 184.99775 * 3 2 1 6 6 N 1.46503 * 109.47339 * 184.99906 * 5 3 2 7 7 C 1.34775 * 120.00239 * 180.02562 * 6 5 3 8 8 O 1.21285 * 120.00044 * 359.72533 * 7 6 5 9 9 C 1.50699 * 120.00260 * 179.72206 * 7 6 5 10 10 S 1.81002 * 109.47341 * 179.97438 * 9 7 6 11 11 C 1.76200 * 99.99825 * 180.02562 * 10 9 7 12 12 H 1.07996 * 120.00072 * 359.97438 * 11 10 9 13 13 C 1.38798 * 119.99436 * 180.02562 * 11 10 9 14 14 N 1.31627 * 120.00584 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99769 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46910 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46839 * 119.99730 * 15 13 11 18 18 H 1.48493 * 109.47439 * 239.99940 * 15 13 11 19 19 N 1.46494 * 109.47672 * 64.99843 * 3 2 1 20 20 C 1.34783 * 119.99871 * 275.00403 * 19 3 2 21 21 O 1.21693 * 120.00145 * 354.69590 * 20 19 3 22 22 C 1.46677 * 119.99861 * 174.70159 * 20 19 3 23 23 C 1.37878 * 126.23447 * 4.99000 * 22 20 19 24 24 C 1.39835 * 107.08384 * 179.97438 * 23 22 20 25 25 C 1.35450 * 107.86664 * 359.97438 * 24 23 22 26 26 N 1.35536 * 108.87153 * 359.76484 * 25 24 23 27 27 C 1.46499 * 125.67617 * 180.26351 * 26 25 24 28 28 H 1.08999 * 109.47180 * 300.00577 * 1 2 3 29 29 H 1.09007 * 109.46930 * 60.00202 * 1 2 3 30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47207 * 239.99856 * 2 1 3 32 32 H 1.08994 * 109.47039 * 119.99502 * 2 1 3 33 33 H 1.09003 * 109.47293 * 65.00117 * 5 3 2 34 34 H 1.09001 * 109.47552 * 305.00059 * 5 3 2 35 35 H 0.97005 * 119.99670 * 359.72198 * 6 5 3 36 36 H 1.09000 * 109.47375 * 300.00325 * 9 7 6 37 37 H 1.09005 * 109.47017 * 60.00142 * 9 7 6 38 38 H 0.97002 * 120.00610 * 180.02562 * 14 13 11 39 39 H 0.97000 * 120.00294 * 94.99153 * 19 3 2 40 40 H 1.08000 * 126.45625 * 359.92433 * 23 22 20 41 41 H 1.07996 * 126.06693 * 180.02562 * 24 23 22 42 42 H 1.08003 * 125.56564 * 179.97438 * 25 24 23 43 43 H 1.08999 * 109.47107 * 274.99633 * 27 26 25 44 44 H 1.08998 * 109.47532 * 34.99681 * 27 26 25 45 45 H 1.08999 * 109.46677 * 154.99944 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0631 2.8168 -0.0059 7 6 5.3857 3.0630 -0.0868 8 8 6.1639 2.1478 -0.2537 9 6 5.8977 4.4755 0.0301 10 16 7.7018 4.4775 -0.1169 11 6 8.0205 6.2022 0.0516 12 1 7.2015 6.8912 0.1958 13 6 9.3243 6.6754 -0.0020 14 7 10.3224 5.8358 -0.1793 15 14 9.6623 8.5039 0.1759 16 1 8.3797 9.2284 0.3632 17 1 10.5364 8.7333 1.3544 18 1 10.3396 9.0036 -1.0475 19 7 1.6525 2.0975 1.2517 20 6 0.4351 2.6644 1.3668 21 8 -0.3050 2.7176 0.4023 22 6 0.0024 3.2174 2.6546 23 6 0.7664 3.3134 3.7983 24 6 -0.0374 3.8991 4.7813 25 6 -1.2512 4.1456 4.2331 26 7 -1.2383 3.7411 2.9396 27 6 -2.3593 3.8414 2.0018 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.8499 1.0377 -1.0960 34 1 3.9954 0.8311 0.6660 35 1 3.4407 3.5488 0.1271 36 1 5.4673 5.0850 -0.7645 37 1 5.6121 4.8866 0.9985 38 1 11.2336 6.1665 -0.2164 39 1 2.2719 2.1232 1.9977 40 1 1.7921 2.9955 3.9135 41 1 0.2576 4.1170 5.7971 42 1 -2.0910 4.5946 4.7425 43 1 -3.0107 2.9755 2.1203 44 1 -2.9237 4.7512 2.2061 45 1 -1.9776 3.8720 0.9813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356869668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:31 Heat of formation + Delta-G solvation = -55.368666 kcal Electronic energy + Delta-G solvation = -26582.338232 eV Core-core repulsion = 22725.780352 eV Total energy + Delta-G solvation = -3856.557880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -42.34016 -40.94475 -40.16322 -37.55437 -35.04672 -34.57783 -34.09098 -33.19022 -31.49281 -30.24932 -28.81026 -27.63705 -27.35655 -24.58626 -23.88343 -22.09180 -21.61793 -21.29932 -20.66278 -19.83890 -18.83932 -17.83958 -17.62959 -17.25996 -16.87687 -16.78946 -16.53052 -16.28096 -15.91233 -15.68729 -15.21532 -14.80146 -14.61085 -14.46719 -14.39238 -14.23020 -14.13764 -14.03066 -13.48426 -13.23215 -13.18090 -13.15479 -13.00900 -12.90396 -12.86275 -12.63136 -12.50177 -12.19018 -11.82419 -11.70235 -11.15437 -11.00238 -10.98085 -10.27082 -10.19125 -10.13075 -9.67088 -9.16765 -8.65433 -8.34493 -6.11912 0.48559 1.27208 1.41535 1.47006 1.58213 1.60237 1.67505 1.83321 2.21403 2.28100 2.37665 2.43078 2.99763 3.32177 3.51329 3.78949 3.90878 4.00195 4.03125 4.10173 4.20030 4.28818 4.37975 4.38770 4.48108 4.51622 4.52462 4.56583 4.66124 4.75276 4.79284 4.91869 5.05746 5.12489 5.18069 5.28856 5.35770 5.40618 5.42790 5.47121 5.81587 6.03851 6.20524 6.31796 6.42530 6.47961 7.07254 7.15430 7.20651 8.74860 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012209 B = 0.002464 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.763174 B =11362.986557 C =13022.888990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.149 3.851 4 H 0.090 0.910 5 C 0.116 3.884 6 N -0.714 5.714 7 C 0.537 3.463 8 O -0.560 6.560 9 C -0.132 4.132 10 S -0.146 6.146 11 C -0.546 4.546 12 H 0.081 0.919 13 C 0.014 3.986 14 N -0.910 5.910 15 Si 0.998 3.002 16 H -0.258 1.258 17 H -0.273 1.273 18 H -0.274 1.274 19 N -0.707 5.707 20 C 0.594 3.406 21 O -0.570 6.570 22 C -0.087 4.087 23 C -0.142 4.142 24 C -0.225 4.225 25 C 0.020 3.980 26 N -0.419 5.419 27 C 0.060 3.940 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.411 0.589 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.271 0.729 39 H 0.412 0.588 40 H 0.155 0.845 41 H 0.158 0.842 42 H 0.200 0.800 43 H 0.081 0.919 44 H 0.106 0.894 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.960 -6.612 7.903 30.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.044 3.956 4 H 0.108 0.892 5 C -0.008 4.008 6 N -0.368 5.368 7 C 0.323 3.677 8 O -0.438 6.438 9 C -0.283 4.283 10 S 0.081 5.919 11 C -0.694 4.694 12 H 0.099 0.901 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.820 3.180 16 H -0.182 1.182 17 H -0.198 1.198 18 H -0.200 1.200 19 N -0.359 5.359 20 C 0.384 3.616 21 O -0.451 6.451 22 C -0.199 4.199 23 C -0.169 4.169 24 C -0.248 4.248 25 C -0.116 4.116 26 N -0.092 5.092 27 C -0.080 4.080 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.247 0.753 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.080 0.920 39 H 0.249 0.751 40 H 0.173 0.827 41 H 0.176 0.824 42 H 0.216 0.784 43 H 0.100 0.900 44 H 0.124 0.876 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -28.327 -8.151 6.621 30.211 hybrid contribution -0.300 2.242 0.596 2.340 sum -28.627 -5.909 7.217 30.108 Atomic orbital electron populations 1.21676 0.95374 1.01053 1.01329 1.21879 0.96330 0.94372 1.04148 1.21217 0.92232 0.94935 0.87180 0.89209 1.21727 0.92210 0.83144 1.03763 1.45727 1.06045 1.10439 1.74557 1.19958 0.82639 0.89745 0.75333 1.90703 1.56886 1.46899 1.49279 1.23384 1.01164 0.97195 1.06585 1.85522 0.99171 1.11748 1.95451 1.23226 0.96100 0.92530 1.57497 0.90098 1.26105 0.94751 1.04384 0.93871 1.70178 1.00019 1.37035 1.47474 0.84920 0.78723 0.76305 0.78093 1.18172 1.19841 1.19976 1.45653 1.15830 1.57199 1.17227 1.17024 0.81753 0.76745 0.86118 1.90760 1.54488 1.59747 1.40124 1.20115 0.88813 1.14633 0.96390 1.21684 1.00154 1.03150 0.91928 1.21186 0.94097 1.08361 1.01187 1.22628 1.01342 1.04091 0.83531 1.44091 1.10394 1.43975 1.10756 1.22409 0.87395 1.04390 0.93830 0.94352 0.93325 0.92216 0.89131 0.90389 0.89856 0.90277 0.75254 0.87688 0.87239 0.91978 0.75146 0.82747 0.82440 0.78361 0.90031 0.87577 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.58 71.98 0.62 -1.64 16 2 C -0.13 -1.78 5.61 30.59 0.17 -1.60 16 3 C 0.15 2.37 2.42 44.99 0.11 2.47 16 4 H 0.09 1.67 7.51 -2.39 -0.02 1.65 16 5 C 0.12 2.22 5.23 86.38 0.45 2.67 16 6 N -0.71 -16.88 5.39 -463.05 -2.49 -19.37 16 7 C 0.54 18.95 7.85 87.66 0.69 19.64 16 8 O -0.56 -24.71 15.86 -3.04 -0.05 -24.76 16 9 C -0.13 -5.16 6.16 71.24 0.44 -4.72 16 10 S -0.15 -8.03 20.57 -56.49 -1.16 -9.19 16 11 C -0.55 -31.08 9.50 67.95 0.65 -30.44 16 12 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 13 C 0.01 0.78 5.49 84.86 0.47 1.24 16 14 N -0.91 -55.72 13.22 21.65 0.29 -55.43 16 15 Si 1.00 43.60 29.55 68.60 2.03 45.63 16 16 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 N -0.71 -11.13 4.46 -446.51 -1.99 -13.12 16 20 C 0.59 11.82 6.14 86.45 0.53 12.35 16 21 O -0.57 -13.78 12.13 -4.32 -0.05 -13.83 16 22 C -0.09 -1.65 6.89 40.35 0.28 -1.37 16 23 C -0.14 -2.38 10.36 22.57 0.23 -2.15 16 24 C -0.22 -3.31 10.81 22.01 0.24 -3.07 16 25 C 0.02 0.26 11.38 83.48 0.95 1.21 16 26 N -0.42 -6.87 3.16 -534.31 -1.69 -8.56 16 27 C 0.06 0.75 10.76 127.77 1.38 2.13 16 28 H 0.04 0.75 5.76 -2.39 -0.01 0.73 16 29 H 0.05 0.92 7.92 -2.38 -0.02 0.90 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.41 8.08 8.14 -92.70 -0.75 7.33 16 36 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 37 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 38 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 39 H 0.41 5.50 7.50 -92.71 -0.70 4.80 16 40 H 0.15 2.05 7.45 -2.91 -0.02 2.03 16 41 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 42 H 0.20 1.12 8.06 -2.91 -0.02 1.10 16 43 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.09 1.52 5.97 -2.39 -0.01 1.50 16 Total: -1.00 -79.45 388.60 1.64 -77.81 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: -0.43 Total: 24.11 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 7.19 Total: -3.29 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -5.89 Total: -96.48 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -0.10 Total: -38.59 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.19 kcal Total: -79.45 1.64 -77.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356869668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.440 kcal (2) G-P(sol) polarization free energy of solvation -79.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds