Wall clock time and date at job start Tue Mar 31 2020 23:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81004 * 1 3 3 C 1.76192 * 100.00105 * 2 1 4 4 N 1.32811 * 118.99961 * 0.02562 * 3 2 1 5 5 C 1.31967 * 121.06690 * 180.02562 * 4 3 2 6 6 C 1.39996 * 119.07187 * 359.97438 * 5 4 3 7 7 C 1.47235 * 120.90571 * 180.02562 * 6 5 4 8 8 O 1.21621 * 120.00102 * 126.66064 * 7 6 5 9 9 N 1.34779 * 119.99601 * 306.66029 * 7 6 5 10 10 C 1.46499 * 120.00358 * 4.71544 * 9 7 6 11 11 C 1.50701 * 109.46665 * 95.76041 * 10 9 7 12 12 H 1.07997 * 120.00385 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99531 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00327 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99682 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47288 * 60.00090 * 15 13 11 17 17 H 1.48500 * 109.47107 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47154 * 300.00014 * 15 13 11 19 19 C 1.46501 * 119.99812 * 184.71849 * 9 7 6 20 20 C 1.53000 * 109.46973 * 89.99613 * 19 9 7 21 21 C 1.53007 * 109.47074 * 179.97438 * 20 19 9 22 22 C 1.52999 * 109.46810 * 65.00155 * 21 20 19 23 23 C 1.53002 * 109.47268 * 185.00363 * 21 20 19 24 24 C 1.40971 * 118.19480 * 359.97438 * 6 5 4 25 25 O 1.35279 * 120.56841 * 180.29516 * 24 6 5 26 26 N 1.32541 * 118.85719 * 0.02562 * 24 6 5 27 27 H 1.08996 * 109.47286 * 300.00198 * 1 2 3 28 28 H 1.08997 * 109.46639 * 60.00098 * 1 2 3 29 29 H 1.08992 * 109.46957 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.46539 * 179.97438 * 5 4 3 31 31 H 1.08994 * 109.47263 * 215.76095 * 10 9 7 32 32 H 1.09003 * 109.47172 * 335.76590 * 10 9 7 33 33 H 0.96996 * 120.00448 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.47263 * 209.99970 * 19 9 7 35 35 H 1.09005 * 109.46803 * 330.00143 * 19 9 7 36 36 H 1.08997 * 109.47632 * 299.99791 * 20 19 9 37 37 H 1.08997 * 109.47083 * 60.00312 * 20 19 9 38 38 H 1.09000 * 109.47115 * 305.00863 * 21 20 19 39 39 H 1.09006 * 109.46945 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.47219 * 299.99983 * 22 21 20 41 41 H 1.09003 * 109.47336 * 60.00078 * 22 21 20 42 42 H 1.09002 * 109.46864 * 59.99860 * 23 21 20 43 43 H 1.08996 * 109.47027 * 180.02562 * 23 21 20 44 44 H 1.09003 * 109.46835 * 299.99896 * 23 21 20 45 45 H 0.96696 * 114.00326 * 269.72227 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0839 2.5710 0.0005 5 6 1.2661 3.8780 0.0000 6 6 2.5718 4.3829 -0.0005 7 6 2.8216 5.8339 -0.0005 8 8 3.5449 6.3264 0.8442 9 7 2.2487 6.6162 -0.9365 10 6 1.2969 6.0406 -1.8899 11 6 -0.1081 6.2562 -1.3892 12 1 -0.2753 6.7701 -0.4542 13 6 -1.1800 5.7962 -2.1244 14 7 -0.9764 5.1690 -3.2623 15 14 -2.9216 6.0641 -1.5042 16 1 -3.1795 7.5199 -1.3661 17 1 -3.8863 5.4794 -2.4699 18 1 -3.0834 5.4052 -0.1832 19 6 2.5778 8.0423 -1.0006 20 6 3.7762 8.2479 -1.9293 21 6 4.1195 9.7375 -1.9968 22 6 4.5870 10.2158 -0.6208 23 6 5.2357 9.9578 -3.0198 24 6 3.6411 3.4642 0.0001 25 8 4.9220 3.8994 0.0056 26 7 3.3698 2.1668 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.4196 4.5488 0.0000 31 1 1.4155 6.5249 -2.8591 32 1 1.4862 4.9720 -1.9920 33 1 -1.7305 4.8452 -3.7793 34 1 1.7211 8.5960 -1.3849 35 1 2.8256 8.4032 -0.0024 36 1 4.6329 7.6943 -1.5451 37 1 3.5284 7.8870 -2.9275 38 1 3.2357 10.3008 -2.2963 39 1 4.8312 11.2771 -0.6687 40 1 3.7918 10.0589 0.1080 41 1 5.4708 9.6525 -0.3211 42 1 4.9026 9.6169 -4.0001 43 1 5.4806 11.0188 -3.0675 44 1 6.1195 9.3944 -2.7201 45 1 5.2986 4.0246 -0.8761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362056939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:06 Heat of formation + Delta-G solvation = -42.628718 kcal Electronic energy + Delta-G solvation = -28104.509891 eV Core-core repulsion = 24248.504456 eV Total energy + Delta-G solvation = -3856.005435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.94276 -38.95320 -37.47289 -36.55704 -34.92897 -33.11216 -32.72516 -31.60332 -29.19189 -28.76759 -27.25271 -27.05259 -25.24175 -23.92273 -23.31044 -22.75560 -19.85299 -19.33069 -19.13667 -18.04045 -16.95741 -16.85720 -16.51738 -15.87456 -15.25272 -15.03231 -14.64587 -14.57421 -14.41351 -14.05077 -13.64158 -13.50119 -13.37733 -13.28836 -13.13154 -12.66324 -12.50043 -12.38164 -12.12015 -12.06873 -11.72815 -11.53522 -11.23372 -11.05799 -11.03349 -10.92887 -10.79007 -10.60933 -10.52344 -10.37640 -10.32109 -10.13483 -9.92238 -9.67040 -9.24442 -9.10428 -8.71938 -7.88812 -7.68930 -6.35799 -4.46401 0.70328 1.24710 1.28783 2.19084 3.11874 3.14683 3.20658 3.23436 3.46264 3.71430 3.92835 4.19407 4.66469 4.80676 4.96007 4.99239 5.06487 5.08173 5.16443 5.21115 5.31104 5.35305 5.58781 5.68826 5.77884 5.80247 5.84703 5.92779 5.93940 5.96552 6.06300 6.20692 6.28412 6.34292 6.50752 6.54912 6.58669 6.63401 6.98543 7.01216 7.35328 7.48742 7.57234 7.84298 8.01323 8.12909 8.58799 8.79376 9.22886 10.69673 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008814 B = 0.004684 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.176484 B = 5976.701125 C = 8466.017002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.003 6.003 3 C 0.321 3.679 4 N -0.529 5.529 5 C 0.232 3.768 6 C -0.247 4.247 7 C 0.569 3.431 8 O -0.547 6.547 9 N -0.587 5.587 10 C 0.233 3.767 11 C -0.554 4.554 12 H 0.066 0.934 13 C 0.073 3.927 14 N -0.879 5.879 15 Si 0.895 3.105 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.120 3.880 20 C -0.128 4.128 21 C -0.094 4.094 22 C -0.148 4.148 23 C -0.145 4.145 24 C 0.406 3.594 25 O -0.461 6.461 26 N -0.532 5.532 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.207 0.793 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.269 0.731 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.532 -1.459 1.029 5.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.231 5.769 3 C -0.054 4.054 4 N -0.248 5.248 5 C 0.064 3.936 6 C -0.259 4.259 7 C 0.354 3.646 8 O -0.427 6.427 9 N -0.317 5.317 10 C 0.113 3.887 11 C -0.592 4.592 12 H 0.084 0.916 13 C -0.132 4.132 14 N -0.516 5.516 15 Si 0.722 3.278 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.003 4.003 20 C -0.166 4.166 21 C -0.113 4.113 22 C -0.205 4.205 23 C -0.202 4.202 24 C 0.215 3.785 25 O -0.268 6.268 26 N -0.260 5.260 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.122 0.878 30 H 0.223 0.777 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 6.351 -3.254 1.874 7.378 hybrid contribution -1.592 2.123 -0.477 2.696 sum 4.759 -1.131 1.397 5.087 Atomic orbital electron populations 1.23588 0.93695 1.06081 1.07917 1.85580 1.07310 0.93660 1.90387 1.24867 0.86052 1.00739 0.93710 1.68851 1.33039 1.04690 1.18202 1.24439 0.96520 0.90789 0.81851 1.21823 0.95727 0.96766 1.11569 1.17508 0.80322 0.84968 0.81758 1.90744 1.39186 1.74799 1.37937 1.48159 1.42700 1.08543 1.32262 1.19535 0.86607 0.94466 0.88044 1.21433 0.90437 1.39358 1.07949 0.91627 1.24955 0.99491 0.94259 0.94520 1.69903 1.32246 1.36313 1.13097 0.86591 0.83416 0.78853 0.78977 1.19948 1.20977 1.19704 1.21408 0.97092 0.81547 1.00291 1.21995 0.98728 0.95533 1.00365 1.21045 0.98456 0.96180 0.95577 1.21883 1.01633 1.00180 0.96799 1.21822 0.98528 1.01010 0.98853 1.19227 0.84754 0.86223 0.88246 1.84696 1.22732 1.85651 1.33691 1.67932 1.22161 1.16493 1.19446 0.88933 0.88525 0.87790 0.77728 0.94402 0.94787 0.92145 0.90114 0.90491 0.92040 0.91813 0.91111 0.93262 0.92226 0.92735 0.92783 0.93021 0.92906 0.73570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.61 101.05 0.97 -0.70 16 2 S 0.00 -0.04 22.89 -107.50 -2.46 -2.50 16 3 C 0.32 5.82 7.85 -90.58 -0.71 5.11 16 4 N -0.53 -10.11 9.09 -13.09 -0.12 -10.22 16 5 C 0.23 4.67 8.96 -16.84 -0.15 4.52 16 6 C -0.25 -4.92 4.78 -104.55 -0.50 -5.42 16 7 C 0.57 11.72 6.92 -12.60 -0.09 11.63 16 8 O -0.55 -12.29 16.36 4.08 0.07 -12.22 16 9 N -0.59 -11.61 2.46 -176.40 -0.43 -12.04 16 10 C 0.23 5.14 4.68 -5.19 -0.02 5.11 16 11 C -0.55 -13.06 7.05 -34.44 -0.24 -13.30 16 12 H 0.07 1.56 7.81 -52.49 -0.41 1.15 16 13 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 14 N -0.88 -22.59 13.29 55.43 0.74 -21.86 16 15 Si 0.89 19.18 29.54 -169.99 -5.02 14.16 16 16 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 C 0.12 2.06 5.22 -4.04 -0.02 2.04 16 20 C -0.13 -1.89 5.01 -26.73 -0.13 -2.02 16 21 C -0.09 -1.15 2.92 -90.62 -0.26 -1.42 16 22 C -0.15 -1.77 8.95 37.16 0.33 -1.43 16 23 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 24 C 0.41 7.66 7.84 -16.21 -0.13 7.53 16 25 O -0.46 -7.70 12.87 -18.70 -0.24 -7.94 16 26 N -0.53 -10.01 10.40 -13.12 -0.14 -10.15 16 27 H 0.09 1.10 8.11 -51.92 -0.42 0.68 16 28 H 0.10 1.25 8.11 -51.92 -0.42 0.83 16 29 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 30 H 0.21 4.35 5.41 -52.49 -0.28 4.07 16 31 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 32 H 0.03 0.80 5.64 -51.93 -0.29 0.51 16 33 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 34 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 35 H 0.08 1.35 5.78 -51.93 -0.30 1.05 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.76 6.57 -51.93 -0.34 0.42 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.40 4.67 9.06 45.56 0.41 5.08 16 LS Contribution 386.89 15.07 5.83 5.83 Total: -1.00 -28.86 386.89 -8.33 -37.19 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.84 Total: 7.63 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -0.71 Total: 12.12 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.05 Total: -54.27 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.17 Total: -20.16 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.46 Total: -2.50 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -28.86 -8.33 -37.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362056939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.444 kcal (2) G-P(sol) polarization free energy of solvation -28.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds