Wall clock time and date at job start Wed Apr 1 2020 00:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47046 * 2 1 4 4 C 1.50704 * 109.47360 * 239.99877 * 2 1 3 5 5 H 1.07999 * 120.00311 * 240.00117 * 4 2 1 6 6 C 1.37875 * 119.99780 * 59.99936 * 4 2 1 7 7 N 1.31519 * 120.00033 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00199 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47034 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47476 * 119.99914 * 8 6 4 11 11 H 1.48501 * 109.47338 * 240.00057 * 8 6 4 12 12 C 1.53004 * 109.47037 * 120.00192 * 2 1 3 13 13 S 1.81399 * 109.46768 * 299.99756 * 12 2 1 14 14 O 1.42108 * 110.54223 * 68.38090 * 13 12 2 15 15 O 1.42100 * 110.54782 * 291.62680 * 13 12 2 16 16 N 1.65601 * 104.44772 * 180.02562 * 13 12 2 17 17 C 1.47020 * 125.64787 * 269.96236 * 16 13 12 18 18 C 1.54328 * 107.27093 * 181.09626 * 17 16 13 19 19 C 1.55153 * 102.94256 * 22.19046 * 18 17 16 20 20 H 1.08998 * 111.04254 * 82.58823 * 19 18 17 21 21 C 1.50706 * 111.00538 * 206.42881 * 19 18 17 22 22 C 1.38386 * 120.00107 * 75.80358 * 21 19 18 23 23 N 1.32127 * 119.99559 * 179.78275 * 22 21 19 24 24 C 1.32161 * 119.99985 * 0.49649 * 23 22 21 25 25 C 1.38348 * 119.99805 * 359.73228 * 24 23 22 26 26 N 1.32120 * 119.99615 * 256.08070 * 21 19 18 27 27 C 1.47425 * 125.64954 * 90.00297 * 16 13 12 28 28 H 1.09001 * 109.47061 * 299.99772 * 1 2 3 29 29 H 1.08996 * 109.47032 * 60.00042 * 1 2 3 30 30 H 1.09002 * 109.46856 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46725 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47171 * 299.99873 * 3 2 1 33 33 H 1.09001 * 109.47004 * 60.00193 * 3 2 1 34 34 H 0.97001 * 119.99986 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.46911 * 180.02562 * 12 2 1 36 36 H 1.08994 * 109.47491 * 59.99996 * 12 2 1 37 37 H 1.09004 * 109.88406 * 300.50725 * 17 16 13 38 38 H 1.08995 * 109.88348 * 61.52353 * 17 16 13 39 39 H 1.09006 * 110.71979 * 263.82864 * 18 17 16 40 40 H 1.08992 * 110.72354 * 140.55853 * 18 17 16 41 41 H 1.08001 * 120.00283 * 0.02562 * 22 21 19 42 42 H 1.08001 * 119.99781 * 179.72020 * 24 23 22 43 43 H 1.07997 * 119.99137 * 180.02562 * 25 24 23 44 44 H 1.09000 * 110.36579 * 36.99457 * 27 16 13 45 45 H 1.09005 * 110.36658 * 274.67366 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 3.1466 -2.2870 -3.6037 10 1 1.1662 -1.5866 -4.8160 11 1 3.1466 -0.1873 -4.8165 12 6 2.0400 -0.7213 1.2493 13 16 1.4353 0.1339 2.7303 14 8 0.0279 -0.0184 2.8544 15 8 2.0479 1.4100 2.8544 16 7 2.0541 -0.7400 3.9936 17 6 1.3986 -1.8818 4.6480 18 6 2.3306 -2.3562 5.7830 19 6 3.1972 -1.1014 6.0685 20 1 2.6771 -0.4088 6.7303 21 6 4.5364 -1.4886 6.6411 22 6 5.5170 -2.0107 5.8160 23 7 6.6925 -2.3461 6.3174 24 6 6.9284 -2.1922 7.6086 25 6 5.9463 -1.6746 8.4343 26 7 4.7722 -1.3347 7.9320 27 6 3.3530 -0.5014 4.6488 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 0.7089 1.1614 -3.4844 35 1 3.1300 -0.7209 1.2495 36 1 1.6767 -1.7489 1.2493 37 1 0.4392 -1.5712 5.0617 38 1 1.2488 -2.6860 3.9277 39 1 2.9527 -3.1868 5.4493 40 1 1.7536 -2.6351 6.6646 41 1 5.3228 -2.1403 4.7615 42 1 7.8877 -2.4706 8.0192 43 1 6.1393 -1.5485 9.4894 44 1 3.5568 0.5676 4.7089 45 1 4.1503 -1.0106 4.1072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365743015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:52 Heat of formation + Delta-G solvation = -40.410182 kcal Electronic energy + Delta-G solvation = -27972.390983 eV Core-core repulsion = 24116.481751 eV Total energy + Delta-G solvation = -3855.909232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 11.52 seconds Orbital eigenvalues (eV) -42.16130 -39.49630 -38.15394 -38.12647 -36.91059 -35.33811 -33.76540 -33.62141 -31.11849 -29.68467 -28.32424 -27.70007 -27.25501 -25.71305 -25.24872 -23.31276 -21.85298 -21.29352 -19.89782 -18.90030 -18.66687 -18.06487 -17.89117 -17.20136 -16.95049 -16.77036 -16.53342 -16.05155 -15.73154 -15.21213 -14.86920 -14.76995 -14.57279 -14.43333 -14.39699 -13.91811 -13.82689 -13.69336 -13.25136 -13.09134 -12.91847 -12.78893 -12.76020 -12.67386 -12.57011 -12.53693 -12.34646 -12.17733 -12.11511 -12.03558 -11.95616 -11.75273 -11.57263 -11.38498 -10.64682 -10.42565 -10.14854 -10.03164 -9.90473 -8.03459 -6.22146 -0.70108 -0.19494 0.16277 1.43037 1.46233 1.55683 1.76449 2.44134 2.68436 2.86936 2.94304 3.16793 3.20440 3.31765 3.42109 3.59859 3.71858 3.92690 4.01032 4.06736 4.16722 4.27253 4.32311 4.42076 4.50365 4.52224 4.59277 4.69092 4.80374 4.84815 4.85777 4.86619 4.96711 5.00154 5.05721 5.08216 5.24470 5.38238 5.40077 5.44485 5.52168 5.64727 5.96827 6.11079 6.33282 6.33623 6.82876 6.83090 7.46407 8.96615 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017642 B = 0.002964 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.703318 B = 9444.770827 C =10299.189610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.069 3.931 3 C -0.160 4.160 4 C -0.516 4.516 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.264 1.264 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.584 4.584 13 S 2.625 3.375 14 O -0.984 6.984 15 O -0.987 6.987 16 N -1.016 6.016 17 C 0.108 3.892 18 C -0.104 4.104 19 C -0.041 4.041 20 H 0.102 0.898 21 C 0.088 3.912 22 C 0.043 3.957 23 N -0.460 5.460 24 C 0.043 3.957 25 C 0.055 3.945 26 N -0.459 5.459 27 C 0.112 3.888 28 H 0.032 0.968 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.031 0.969 34 H 0.261 0.739 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.182 0.818 42 H 0.202 0.798 43 H 0.203 0.797 44 H 0.078 0.922 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.341 -9.048 21.608 25.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.067 3.933 3 C -0.218 4.218 4 C -0.555 4.555 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.188 1.188 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.717 4.717 13 S 2.726 3.274 14 O -0.975 6.975 15 O -0.977 6.977 16 N -0.855 5.855 17 C -0.016 4.016 18 C -0.143 4.143 19 C -0.063 4.063 20 H 0.121 0.879 21 C -0.052 4.052 22 C -0.116 4.116 23 N -0.174 5.174 24 C -0.117 4.117 25 C -0.105 4.105 26 N -0.174 5.174 27 C -0.013 4.013 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.121 0.879 41 H 0.199 0.801 42 H 0.219 0.781 43 H 0.220 0.780 44 H 0.096 0.904 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.667 -8.109 21.510 24.567 hybrid contribution 0.412 -0.438 -1.440 1.561 sum 9.080 -8.547 20.070 23.628 Atomic orbital electron populations 1.22213 0.97740 1.00571 1.01301 1.17930 0.92347 0.92101 0.90921 1.22212 0.99851 0.98454 1.01293 1.21332 1.31573 1.12280 0.90334 0.91753 1.25685 0.95188 0.95654 1.01714 1.69955 1.37258 1.23728 1.23792 0.85555 0.78033 0.78748 0.79582 1.18842 1.20978 1.21036 1.30497 1.12546 1.13446 1.15161 1.04465 0.73649 0.74226 0.75108 1.93497 1.30970 1.86873 1.86139 1.93493 1.78587 1.39496 1.86156 1.58515 1.30464 1.47738 1.48770 1.21996 0.96577 0.87448 0.95619 1.22697 0.97091 0.96143 0.98358 1.21098 0.91192 0.98964 0.95003 0.87944 1.21836 0.96675 0.96145 0.90520 1.23871 0.89260 0.95857 1.02631 1.68532 1.20549 1.13201 1.15134 1.24388 1.02246 0.95606 0.89433 1.24370 0.88508 0.94088 1.03507 1.68250 1.22260 1.13680 1.13215 1.22333 0.84950 1.01936 0.92129 0.94969 0.91086 0.93964 0.94069 0.91067 0.94998 0.92939 0.84501 0.84387 0.91084 0.89631 0.88787 0.87922 0.80120 0.78138 0.77989 0.90379 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.94 7.78 71.98 0.56 -7.38 16 2 C 0.07 3.31 0.52 -52.92 -0.03 3.28 16 3 C -0.16 -7.96 7.78 71.98 0.56 -7.40 16 4 C -0.52 -26.63 8.01 25.60 0.21 -26.42 16 5 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 6 C 0.02 0.89 5.15 84.65 0.44 1.33 16 7 N -0.91 -50.26 9.35 21.45 0.20 -50.06 16 8 Si 0.95 41.91 29.54 68.60 2.03 43.94 16 9 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 C -0.58 -21.62 5.12 71.98 0.37 -21.25 16 13 S 2.63 94.74 4.68 -56.49 -0.26 94.48 16 14 O -0.98 -40.53 15.22 -127.65 -1.94 -42.47 16 15 O -0.99 -40.90 14.90 -127.65 -1.90 -42.80 16 16 N -1.02 -26.16 3.62 -506.42 -1.83 -28.00 16 17 C 0.11 2.14 6.90 86.73 0.60 2.73 16 18 C -0.10 -1.47 6.40 31.78 0.20 -1.27 16 19 C -0.04 -0.72 3.42 -10.15 -0.03 -0.75 16 20 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 21 C 0.09 1.55 5.89 42.55 0.25 1.80 16 22 C 0.04 0.73 10.17 84.68 0.86 1.59 16 23 N -0.46 -8.16 10.50 -195.22 -2.05 -10.21 16 24 C 0.04 0.51 11.23 84.67 0.95 1.46 16 25 C 0.06 0.65 11.22 84.67 0.95 1.60 16 26 N -0.46 -8.09 10.42 -183.29 -1.91 -10.00 16 27 C 0.11 2.38 6.39 86.85 0.55 2.93 16 28 H 0.03 1.52 5.46 -2.39 -0.01 1.51 16 29 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 30 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 3.87 6.07 -2.39 -0.01 3.85 16 33 H 0.03 1.51 5.46 -2.39 -0.01 1.50 16 34 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 35 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 36 H 0.14 4.49 8.14 -2.39 -0.02 4.48 16 37 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.09 1.08 7.93 -2.38 -0.02 1.06 16 40 H 0.10 1.17 8.14 -2.39 -0.02 1.16 16 41 H 0.18 2.53 6.26 -2.91 -0.02 2.51 16 42 H 0.20 0.88 8.06 -2.91 -0.02 0.86 16 43 H 0.20 0.83 8.06 -2.91 -0.02 0.81 16 44 H 0.08 1.86 7.67 -2.39 -0.02 1.84 16 45 H 0.09 1.54 5.83 -2.38 -0.01 1.53 16 Total: -1.00 -72.21 363.57 -0.24 -72.45 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 1.00 Total: 20.42 kcal Atomic # 6 Polarization: -54.18 SS G_CDS: 6.44 Total: -47.74 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -5.59 Total: -98.27 kcal Atomic # 8 Polarization: -81.43 SS G_CDS: -3.85 Total: -85.27 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: 94.74 SS G_CDS: -0.26 Total: 94.48 kcal Total: -72.21 -0.24 -72.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365743015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.037 kcal (2) G-P(sol) polarization free energy of solvation -72.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.52 seconds