Wall clock time and date at job start Wed Apr 1 2020 00:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53008 * 109.46980 * 228.04148 * 3 2 1 5 5 O 1.42900 * 109.46924 * 179.97438 * 4 3 2 6 6 C 1.35715 * 116.99533 * 179.97438 * 5 4 3 7 7 C 1.38990 * 119.90708 * 180.02562 * 6 5 4 8 8 C 1.37708 * 120.09162 * 180.02562 * 7 6 5 9 9 C 1.39744 * 119.90295 * 359.97438 * 8 7 6 10 10 C 1.47580 * 120.08276 * 180.02562 * 9 8 7 11 11 O 1.21594 * 120.00349 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99917 * 180.02562 * 10 9 8 13 13 C 1.40085 * 120.00227 * 179.97438 * 12 10 9 14 14 C 1.40424 * 125.97425 * 359.97438 * 13 12 10 15 15 C 1.35237 * 107.86511 * 179.73976 * 14 13 12 16 16 N 1.34970 * 107.86759 * 0.26440 * 15 14 13 17 17 C 1.46498 * 125.97694 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47061 * 125.00271 * 17 16 15 19 19 H 1.07999 * 119.99650 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00044 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99958 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99802 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47696 * 90.00113 * 22 20 18 24 24 H 1.48505 * 109.46708 * 210.00174 * 22 20 18 25 25 H 1.48506 * 109.47045 * 329.99344 * 22 20 18 26 26 N 1.31231 * 125.97871 * 180.21577 * 13 12 10 27 27 C 1.39740 * 119.82444 * 0.27304 * 9 8 7 28 28 C 1.37694 * 119.91113 * 359.45218 * 27 9 8 29 29 H 4.44655 * 5.63255 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.47466 * 108.04090 * 3 2 1 31 31 H 1.08998 * 109.47288 * 348.03703 * 3 2 1 32 32 H 1.08998 * 109.47068 * 59.99699 * 4 3 2 33 33 H 1.08998 * 109.46747 * 299.99887 * 4 3 2 34 34 H 1.08000 * 119.95837 * 359.97438 * 7 6 5 35 35 H 1.08000 * 120.04546 * 179.97438 * 8 7 6 36 36 H 0.96997 * 119.99835 * 359.97438 * 12 10 9 37 37 H 1.08002 * 126.06910 * 0.02562 * 14 13 12 38 38 H 1.08003 * 126.06670 * 180.28769 * 15 14 13 39 39 H 1.09000 * 109.47389 * 245.00706 * 17 16 15 40 40 H 1.09000 * 109.46879 * 5.00535 * 17 16 15 41 41 H 0.96993 * 119.99858 * 179.97438 * 21 20 18 42 42 H 1.08008 * 120.03981 * 179.70029 * 27 9 8 43 43 H 1.07998 * 119.96015 * 180.27326 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9654 1.0727 5 8 4.5845 0.9656 1.0731 6 6 5.2002 1.7747 1.9721 7 6 6.5883 1.8225 2.0246 8 6 7.2170 2.6418 2.9356 9 6 6.4573 3.4261 3.8076 10 6 7.1269 4.3059 4.7851 11 8 8.3411 4.3487 4.8328 12 7 6.3925 5.0613 5.6257 13 6 7.0280 5.8961 6.5539 14 6 8.4150 6.0428 6.7172 15 6 8.6236 6.9407 7.7068 16 7 7.4182 7.3451 8.1598 17 6 7.1830 8.3150 9.2323 18 6 6.2938 9.4203 8.7238 19 1 5.9396 9.4023 7.7036 20 6 5.9332 10.4551 9.5605 21 7 5.1576 11.4200 9.1166 22 14 6.5475 10.4873 11.3243 23 1 7.8390 11.2177 11.3856 24 1 5.5495 11.1736 12.1836 25 1 6.7422 9.0962 11.8062 26 7 6.4314 6.6744 7.4260 27 6 5.0619 3.3712 3.7551 28 6 4.4410 2.5537 2.8374 29 1 -1.0502 -0.0001 -0.0004 30 1 3.0092 0.3191 -0.9771 31 1 3.0098 -1.0045 0.2130 32 1 2.7923 0.6470 2.0498 33 1 2.7917 1.9705 0.8597 34 1 7.1747 1.2157 1.3506 35 1 8.2956 2.6780 2.9760 36 1 5.4238 5.0269 5.5879 37 1 9.1795 5.5329 6.1498 38 1 9.5842 7.2751 8.0699 39 1 6.6995 7.8172 10.0728 40 1 8.1349 8.7350 9.5574 41 1 4.9036 12.1477 9.7054 42 1 4.4713 3.9723 4.4307 43 1 3.3627 2.5140 2.7931 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001456670474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:41:42 Heat of formation + Delta-G solvation = 97.484737 kcal Electronic energy + Delta-G solvation = -26440.681978 eV Core-core repulsion = 22455.308367 eV Total energy + Delta-G solvation = -3985.373611 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.97572 -40.50671 -39.39323 -37.52226 -35.08110 -34.88314 -33.33464 -31.83541 -31.23885 -31.04766 -29.93014 -29.37432 -27.15986 -25.16951 -24.04246 -22.90337 -22.27299 -21.37197 -20.26219 -19.63641 -19.13026 -18.27485 -17.51063 -17.08552 -16.79954 -16.67289 -16.24415 -15.46833 -15.20942 -15.15601 -14.64534 -14.43324 -14.34101 -14.25956 -13.97431 -13.79266 -13.60641 -13.18846 -12.82692 -12.66175 -12.56312 -12.48977 -12.33116 -12.13828 -11.44127 -11.26543 -11.15477 -10.85246 -10.78213 -10.66978 -10.65284 -10.09053 -10.01098 -9.69589 -9.53314 -9.44180 -8.77377 -8.66158 -8.19841 -7.52859 -6.24160 -4.26524 0.59290 0.97730 2.04425 2.28607 2.43272 2.68982 2.74849 2.85699 3.15169 3.22098 3.23764 3.42706 3.76697 3.83154 3.92485 4.22337 4.24698 4.35683 4.40761 4.50917 4.58911 4.69055 4.85955 5.00271 5.03677 5.17357 5.19406 5.29233 5.42422 5.45685 5.57960 5.67879 5.76284 5.87494 6.01818 6.17766 6.27979 6.38642 6.43316 6.57608 6.65603 6.87718 7.04117 7.23978 7.33254 7.55799 7.80598 8.20793 8.32774 8.54706 8.85568 9.30749 10.88541 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.001790 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.607126 B =15637.717351 C =17090.635755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.196 4.196 3 C -0.008 4.008 4 C 0.062 3.938 5 O -0.311 6.311 6 C 0.156 3.844 7 C -0.159 4.159 8 C -0.016 4.016 9 C -0.166 4.166 10 C 0.568 3.432 11 O -0.517 6.517 12 N -0.627 5.627 13 C 0.260 3.740 14 C -0.282 4.282 15 C 0.051 3.949 16 N -0.318 5.318 17 C 0.232 3.768 18 C -0.535 4.535 19 H 0.086 0.914 20 C 0.076 3.924 21 N -0.887 5.887 22 Si 0.873 3.127 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.264 1.264 26 N -0.297 5.297 27 C -0.042 4.042 28 C -0.216 4.216 29 H 0.221 0.779 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.410 0.590 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.042 0.958 40 H 0.049 0.951 41 H 0.268 0.732 42 H 0.133 0.867 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.067 -23.528 -16.348 28.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C -0.045 4.045 4 C -0.014 4.014 5 O -0.224 6.224 6 C 0.110 3.890 7 C -0.178 4.178 8 C -0.035 4.035 9 C -0.169 4.169 10 C 0.356 3.644 11 O -0.392 6.392 12 N -0.274 5.274 13 C 0.007 3.993 14 C -0.314 4.314 15 C -0.098 4.098 16 N -0.100 5.100 17 C 0.113 3.887 18 C -0.573 4.573 19 H 0.104 0.896 20 C -0.128 4.128 21 N -0.525 5.525 22 Si 0.699 3.301 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.189 1.189 26 N -0.128 5.128 27 C -0.061 4.061 28 C -0.234 4.234 29 H 0.237 0.763 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.246 0.754 37 H 0.180 0.820 38 H 0.187 0.813 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.150 0.850 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.351 -22.954 -15.845 28.093 hybrid contribution -0.077 0.151 0.757 0.776 sum -3.428 -22.803 -15.088 27.557 Atomic orbital electron populations 1.25019 0.96011 0.99782 0.99607 1.22567 0.93937 1.01486 1.01577 1.18421 0.84931 1.01025 1.00078 1.22749 0.78287 1.00447 0.99877 1.85968 1.21128 1.60809 1.54485 1.19222 0.92331 0.89260 0.88236 1.20402 0.91087 1.03619 1.02666 1.21090 1.00889 0.90844 0.90652 1.19714 0.93558 1.02721 1.00954 1.18046 0.86808 0.79422 0.80110 1.90711 1.13297 1.65614 1.69599 1.42335 1.10278 1.41157 1.33665 1.19073 0.91622 0.95082 0.93526 1.21559 0.94801 1.08814 1.06184 1.22566 0.91435 0.98089 0.97718 1.48614 1.02007 1.31611 1.27770 1.20052 0.98549 0.86490 0.83620 1.21110 1.30454 1.04539 1.01200 0.89644 1.24833 0.94541 0.94995 0.98390 1.69870 1.34899 1.11240 1.36461 0.86904 0.79314 0.78991 0.84878 1.19695 1.20531 1.18868 1.77390 1.13894 1.12153 1.09323 1.21170 0.93340 0.95549 0.96030 1.21177 1.00446 1.01912 0.99894 0.76253 0.88251 0.88274 0.91126 0.91083 0.84265 0.83555 0.75380 0.82010 0.81323 0.94016 0.93295 0.92176 0.84966 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.03 19.25 29.55 0.57 -0.46 16 2 C -0.20 -1.22 13.34 -37.12 -0.50 -1.72 16 3 C -0.01 -0.04 6.07 -29.51 -0.18 -0.22 16 4 C 0.06 0.35 4.69 37.16 0.17 0.52 16 5 O -0.31 -2.40 10.12 -18.85 -0.19 -2.59 16 6 C 0.16 1.35 6.70 -39.02 -0.26 1.09 16 7 C -0.16 -1.38 9.97 -39.50 -0.39 -1.77 16 8 C -0.02 -0.16 9.59 -39.21 -0.38 -0.54 16 9 C -0.17 -1.90 5.87 -104.96 -0.62 -2.52 16 10 C 0.57 8.48 7.73 -12.45 -0.10 8.38 16 11 O -0.52 -9.02 13.46 5.28 0.07 -8.95 16 12 N -0.63 -9.90 5.40 -12.06 -0.07 -9.96 16 13 C 0.26 5.22 8.11 -154.45 -1.25 3.97 16 14 C -0.28 -5.51 9.60 -39.83 -0.38 -5.89 16 15 C 0.05 0.99 11.43 -17.24 -0.20 0.79 16 16 N -0.32 -7.21 3.67 -62.56 -0.23 -7.44 16 17 C 0.23 5.48 5.33 -5.19 -0.03 5.46 16 18 C -0.53 -15.08 9.79 -34.44 -0.34 -15.42 16 19 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 20 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 21 N -0.89 -26.54 13.96 55.43 0.77 -25.77 16 22 Si 0.87 20.07 27.47 -169.99 -4.67 15.40 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 26 N -0.30 -6.81 12.42 31.43 0.39 -6.42 16 27 C -0.04 -0.39 9.53 -39.22 -0.37 -0.77 16 28 C -0.22 -1.78 9.01 -39.50 -0.36 -2.14 16 29 H 0.22 0.52 7.80 -54.08 -0.42 0.10 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.36 7.65 -51.93 -0.40 -0.03 16 33 H 0.07 0.37 7.65 -51.93 -0.40 -0.02 16 34 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.15 1.41 7.64 -52.49 -0.40 1.01 16 36 H 0.41 5.31 6.84 -40.82 -0.28 5.03 16 37 H 0.16 3.04 5.91 -52.49 -0.31 2.73 16 38 H 0.17 2.55 8.06 -52.48 -0.42 2.13 16 39 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 40 H 0.05 1.05 7.49 -51.93 -0.39 0.66 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.13 1.02 6.40 -52.48 -0.34 0.68 16 43 H 0.13 0.83 6.28 -52.49 -0.33 0.50 16 LS Contribution 378.38 15.07 5.70 5.70 Total: -1.00 -35.16 378.38 -7.83 -42.99 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.92 Total: 6.23 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -4.70 Total: -9.20 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 0.87 Total: -49.59 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.12 Total: -11.54 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.67 Total: 15.40 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.16 -7.83 -42.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456670474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.473 kcal (2) G-P(sol) polarization free energy of solvation -35.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds