Wall clock time and date at job start Wed Apr 1 2020 00:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53008 * 109.46980 * 228.04148 * 3 2 1 5 5 O 1.42900 * 109.46924 * 179.97438 * 4 3 2 6 6 C 1.35715 * 116.99533 * 179.97438 * 5 4 3 7 7 C 1.38990 * 119.90708 * 180.02562 * 6 5 4 8 8 C 1.37708 * 120.09162 * 180.02562 * 7 6 5 9 9 C 1.39744 * 119.90295 * 359.97438 * 8 7 6 10 10 C 1.47580 * 120.08276 * 180.02562 * 9 8 7 11 11 O 1.21594 * 120.00349 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99917 * 180.02562 * 10 9 8 13 13 C 1.40085 * 120.00227 * 179.97438 * 12 10 9 14 14 C 1.40424 * 125.97425 * 359.97438 * 13 12 10 15 15 C 1.35237 * 107.86511 * 179.73976 * 14 13 12 16 16 N 1.34970 * 107.86759 * 0.26440 * 15 14 13 17 17 C 1.46498 * 125.97694 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47061 * 125.00271 * 17 16 15 19 19 H 1.07999 * 119.99650 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00044 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99958 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99802 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47696 * 90.00113 * 22 20 18 24 24 H 1.48505 * 109.46708 * 210.00174 * 22 20 18 25 25 H 1.48506 * 109.47045 * 329.99344 * 22 20 18 26 26 N 1.31231 * 125.97871 * 180.21577 * 13 12 10 27 27 C 1.39740 * 119.82444 * 0.27304 * 9 8 7 28 28 C 1.37694 * 119.91113 * 359.45218 * 27 9 8 29 29 H 4.44655 * 5.63255 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.47466 * 108.04090 * 3 2 1 31 31 H 1.08998 * 109.47288 * 348.03703 * 3 2 1 32 32 H 1.08998 * 109.47068 * 59.99699 * 4 3 2 33 33 H 1.08998 * 109.46747 * 299.99887 * 4 3 2 34 34 H 1.08000 * 119.95837 * 359.97438 * 7 6 5 35 35 H 1.08000 * 120.04546 * 179.97438 * 8 7 6 36 36 H 0.96997 * 119.99835 * 359.97438 * 12 10 9 37 37 H 1.08002 * 126.06910 * 0.02562 * 14 13 12 38 38 H 1.08003 * 126.06670 * 180.28769 * 15 14 13 39 39 H 1.09000 * 109.47389 * 245.00706 * 17 16 15 40 40 H 1.09000 * 109.46879 * 5.00535 * 17 16 15 41 41 H 0.96993 * 119.99858 * 179.97438 * 21 20 18 42 42 H 1.08008 * 120.03981 * 179.70029 * 27 9 8 43 43 H 1.07998 * 119.96015 * 180.27326 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 0.9654 1.0727 5 8 4.5845 0.9656 1.0731 6 6 5.2002 1.7747 1.9721 7 6 6.5883 1.8225 2.0246 8 6 7.2170 2.6418 2.9356 9 6 6.4573 3.4261 3.8076 10 6 7.1269 4.3059 4.7851 11 8 8.3411 4.3487 4.8328 12 7 6.3925 5.0613 5.6257 13 6 7.0280 5.8961 6.5539 14 6 8.4150 6.0428 6.7172 15 6 8.6236 6.9407 7.7068 16 7 7.4182 7.3451 8.1598 17 6 7.1830 8.3150 9.2323 18 6 6.2938 9.4203 8.7238 19 1 5.9396 9.4023 7.7036 20 6 5.9332 10.4551 9.5605 21 7 5.1576 11.4200 9.1166 22 14 6.5475 10.4873 11.3243 23 1 7.8390 11.2177 11.3856 24 1 5.5495 11.1736 12.1836 25 1 6.7422 9.0962 11.8062 26 7 6.4314 6.6744 7.4260 27 6 5.0619 3.3712 3.7551 28 6 4.4410 2.5537 2.8374 29 1 -1.0502 -0.0001 -0.0004 30 1 3.0092 0.3191 -0.9771 31 1 3.0098 -1.0045 0.2130 32 1 2.7923 0.6470 2.0498 33 1 2.7917 1.9705 0.8597 34 1 7.1747 1.2157 1.3506 35 1 8.2956 2.6780 2.9760 36 1 5.4238 5.0269 5.5879 37 1 9.1795 5.5329 6.1498 38 1 9.5842 7.2751 8.0699 39 1 6.6995 7.8172 10.0728 40 1 8.1349 8.7350 9.5574 41 1 4.9036 12.1477 9.7054 42 1 4.4713 3.9723 4.4307 43 1 3.3627 2.5140 2.7931 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001456670474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:41:39 Heat of formation + Delta-G solvation = 75.735809 kcal Electronic energy + Delta-G solvation = -26441.625082 eV Core-core repulsion = 22455.308367 eV Total energy + Delta-G solvation = -3986.316715 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 12.14 seconds Orbital eigenvalues (eV) -42.30543 -41.43376 -40.49842 -38.31223 -36.31718 -35.52203 -35.22601 -33.28251 -32.23135 -31.73668 -31.02717 -30.59485 -28.92641 -25.88252 -25.03282 -24.28650 -23.33151 -22.53602 -21.69312 -20.97693 -19.70894 -19.10759 -18.91557 -18.44982 -18.06758 -17.34643 -17.29673 -16.68104 -16.57402 -16.27154 -15.99727 -15.43660 -15.31284 -14.99359 -14.83584 -14.79634 -14.59450 -14.43144 -14.35804 -13.90833 -13.83213 -13.60760 -13.28725 -13.12958 -12.98116 -12.52861 -12.33549 -11.99969 -11.91966 -11.83478 -11.63874 -11.48005 -11.27079 -11.05658 -10.99853 -10.86918 -10.15070 -9.79815 -9.42330 -9.07747 -8.37538 -6.47957 -0.25391 0.27647 1.02841 1.29618 1.37195 1.42038 1.50417 1.56578 1.58249 1.87305 2.18879 2.21536 2.29097 2.33187 2.79593 2.95060 3.50753 3.58323 3.62660 3.80948 3.94265 3.96932 4.00341 4.13266 4.18429 4.29575 4.35432 4.53095 4.59969 4.75569 4.81447 4.83236 4.86014 4.89856 4.91896 5.03400 5.10826 5.11800 5.18952 5.24479 5.33279 5.56594 5.85710 6.00017 6.19250 6.25464 6.40617 6.57872 6.64448 6.94624 7.04395 7.15048 8.79558 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.001790 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.607126 B =15637.717351 C =17090.635755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.223 4.223 3 C -0.006 4.006 4 C 0.058 3.942 5 O -0.313 6.313 6 C 0.159 3.841 7 C -0.159 4.159 8 C -0.019 4.019 9 C -0.186 4.186 10 C 0.570 3.430 11 O -0.546 6.546 12 N -0.624 5.624 13 C 0.264 3.736 14 C -0.295 4.295 15 C 0.062 3.938 16 N -0.343 5.343 17 C 0.239 3.761 18 C -0.548 4.548 19 H 0.026 0.974 20 C 0.014 3.986 21 N -0.942 5.942 22 Si 0.956 3.044 23 H -0.253 1.253 24 H -0.281 1.281 25 H -0.239 1.239 26 N -0.347 5.347 27 C -0.040 4.040 28 C -0.214 4.214 29 H 0.244 0.756 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.159 0.841 35 H 0.146 0.854 36 H 0.421 0.579 37 H 0.169 0.831 38 H 0.213 0.787 39 H 0.046 0.954 40 H 0.083 0.917 41 H 0.272 0.728 42 H 0.145 0.855 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.525 -25.203 -15.850 29.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.223 4.223 3 C -0.042 4.042 4 C -0.017 4.017 5 O -0.226 6.226 6 C 0.113 3.887 7 C -0.178 4.178 8 C -0.038 4.038 9 C -0.190 4.190 10 C 0.360 3.640 11 O -0.423 6.423 12 N -0.273 5.273 13 C 0.010 3.990 14 C -0.326 4.326 15 C -0.086 4.086 16 N -0.125 5.125 17 C 0.119 3.881 18 C -0.586 4.586 19 H 0.044 0.956 20 C -0.184 4.184 21 N -0.581 5.581 22 Si 0.777 3.223 23 H -0.177 1.177 24 H -0.206 1.206 25 H -0.162 1.162 26 N -0.178 5.178 27 C -0.059 4.059 28 C -0.233 4.233 29 H 0.260 0.740 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.176 0.824 35 H 0.164 0.836 36 H 0.259 0.741 37 H 0.187 0.813 38 H 0.229 0.771 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.163 0.837 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.820 -24.671 -15.386 29.212 hybrid contribution -0.354 0.552 0.351 0.743 sum -3.173 -24.119 -15.036 28.599 Atomic orbital electron populations 1.25765 0.96953 0.99036 0.98840 1.23009 0.94720 1.02247 1.02350 1.18426 0.84420 1.01241 1.00129 1.22901 0.77077 1.01070 1.00611 1.85971 1.22350 1.60310 1.53982 1.19377 0.92516 0.88854 0.87997 1.20572 0.91477 1.03303 1.02416 1.21144 1.00961 0.90914 0.90739 1.19525 0.94467 1.03610 1.01351 1.18629 0.86584 0.78947 0.79841 1.90673 1.14618 1.66590 1.70459 1.42475 1.11023 1.40708 1.33092 1.19460 0.92276 0.94271 0.93035 1.21782 0.94737 1.09368 1.06667 1.23269 0.91932 0.96772 0.96612 1.48519 1.03014 1.32444 1.28521 1.19901 0.98964 0.85296 0.83900 1.21235 1.31657 1.06759 0.98963 0.95572 1.25926 0.94341 0.93979 1.04200 1.70048 1.36783 1.12388 1.38842 0.85608 0.79083 0.80416 0.77214 1.17731 1.20624 1.16238 1.77306 1.15360 1.13960 1.11139 1.21318 0.92551 0.95670 0.96376 1.21406 1.01625 1.01130 0.99122 0.74003 0.87673 0.87584 0.90433 0.90566 0.82354 0.83630 0.74080 0.81330 0.77081 0.93606 0.89964 0.91876 0.83738 0.82504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.80 19.25 74.32 1.43 -0.37 16 2 C -0.22 -2.49 13.34 31.13 0.42 -2.07 16 3 C -0.01 -0.05 6.07 28.79 0.17 0.13 16 4 C 0.06 0.54 4.69 71.98 0.34 0.88 16 5 O -0.31 -4.18 10.12 -90.36 -0.91 -5.09 16 6 C 0.16 2.45 6.70 22.63 0.15 2.60 16 7 C -0.16 -2.51 9.97 22.32 0.22 -2.29 16 8 C -0.02 -0.37 9.59 22.51 0.22 -0.15 16 9 C -0.19 -4.19 5.87 -20.09 -0.12 -4.31 16 10 C 0.57 17.15 7.73 86.71 0.67 17.82 16 11 O -0.55 -19.28 13.46 -4.01 -0.05 -19.33 16 12 N -0.62 -20.03 5.40 -310.34 -1.67 -21.70 16 13 C 0.26 10.77 8.11 133.35 1.08 11.85 16 14 C -0.29 -11.41 9.60 22.11 0.21 -11.20 16 15 C 0.06 2.31 11.43 83.52 0.96 3.27 16 16 N -0.34 -15.50 3.67 -351.84 -1.29 -16.79 16 17 C 0.24 11.10 5.33 85.63 0.46 11.55 16 18 C -0.55 -31.75 9.79 25.60 0.25 -31.50 16 19 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 20 C 0.01 0.81 5.47 84.66 0.46 1.28 16 21 N -0.94 -58.07 13.96 21.45 0.30 -57.77 16 22 Si 0.96 40.65 27.47 68.60 1.88 42.54 16 23 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.24 -9.17 6.54 99.48 0.65 -8.52 16 26 N -0.35 -16.33 12.42 -54.48 -0.68 -17.00 16 27 C -0.04 -0.71 9.53 22.50 0.21 -0.50 16 28 C -0.21 -3.13 9.01 22.32 0.20 -2.93 16 29 H 0.24 0.69 7.80 -4.41 -0.03 0.66 16 30 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 0.63 7.65 -2.39 -0.02 0.61 16 33 H 0.08 0.65 7.65 -2.39 -0.02 0.63 16 34 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 35 H 0.15 2.80 7.64 -2.91 -0.02 2.78 16 36 H 0.42 11.13 6.84 -92.71 -0.63 10.49 16 37 H 0.17 6.29 5.91 -2.91 -0.02 6.27 16 38 H 0.21 5.72 8.06 -2.91 -0.02 5.69 16 39 H 0.05 2.08 7.20 -2.39 -0.02 2.06 16 40 H 0.08 3.26 7.49 -2.39 -0.02 3.25 16 41 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 42 H 0.14 2.09 6.40 -2.91 -0.02 2.08 16 43 H 0.16 1.54 6.28 -2.91 -0.02 1.52 16 Total: -1.00 -79.74 378.38 5.28 -74.47 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.37 Total: 26.63 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 7.33 Total: -5.94 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -3.34 Total: -113.27 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.97 Total: -24.42 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 1.88 Total: 42.54 kcal Total: -79.74 5.28 -74.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456670474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.204 kcal (2) G-P(sol) polarization free energy of solvation -79.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.14 seconds