Wall clock time and date at job start Wed Apr 1 2020 01:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47138 * 97.97174 * 3 2 1 5 5 C 1.34770 * 119.99825 * 180.02562 * 4 3 2 6 6 O 1.21286 * 120.00535 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.00273 * 179.97438 * 5 4 3 8 8 N 1.46888 * 109.47426 * 173.86859 * 7 5 4 9 9 C 1.47907 * 110.99915 * 183.37095 * 8 7 5 10 10 C 1.54000 * 107.05770 * 145.84241 * 9 8 7 11 11 C 1.54598 * 105.13755 * 358.77661 * 10 9 8 12 12 H 1.09002 * 110.71984 * 96.40236 * 11 10 9 13 13 C 1.52999 * 110.72126 * 219.50117 * 11 10 9 14 14 N 1.46500 * 109.47638 * 291.15119 * 13 11 10 15 15 C 1.34775 * 120.00469 * 180.02562 * 14 13 11 16 16 O 1.21286 * 119.99599 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00208 * 180.02562 * 15 14 13 18 18 S 1.81002 * 109.47100 * 180.02562 * 17 15 14 19 19 C 1.76202 * 99.99885 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00186 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00019 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99468 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00181 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47012 * 59.99650 * 23 21 19 25 25 H 1.48501 * 109.47112 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47005 * 299.99722 * 23 21 19 27 27 C 1.49011 * 110.97305 * 300.81357 * 8 7 5 28 28 H 4.40637 * 5.51419 * 180.02562 * 4 1 2 29 29 H 1.09003 * 109.47327 * 337.96790 * 3 2 1 30 30 H 1.09004 * 109.47228 * 217.97342 * 3 2 1 31 31 H 0.96995 * 119.99662 * 0.02562 * 4 3 2 32 32 H 1.08998 * 109.46787 * 53.86379 * 7 5 4 33 33 H 1.09004 * 109.46571 * 293.87311 * 7 5 4 34 34 H 1.08998 * 109.91587 * 26.49333 * 9 8 7 35 35 H 1.08997 * 110.07968 * 265.28878 * 9 8 7 36 36 H 1.08990 * 110.30781 * 239.85786 * 10 9 8 37 37 H 1.09003 * 110.38870 * 117.73458 * 10 9 8 38 38 H 1.09002 * 109.47087 * 51.14945 * 13 11 10 39 39 H 1.08997 * 109.46851 * 171.14978 * 13 11 10 40 40 H 0.97005 * 119.99613 * 359.97438 * 14 13 11 41 41 H 1.09002 * 109.46845 * 299.99912 * 17 15 14 42 42 H 1.08997 * 109.47271 * 60.00054 * 17 15 14 43 43 H 0.97000 * 119.99202 * 180.02562 * 22 21 19 44 44 H 1.08999 * 110.86710 * 81.89412 * 27 8 7 45 45 H 1.08998 * 110.68095 * 318.61586 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1924 -1.3679 5 6 4.4593 0.2267 -1.6118 6 8 5.2475 0.0992 -0.6989 7 6 4.9617 0.4234 -3.0190 8 7 6.4230 0.5704 -3.0012 9 6 6.9446 0.8458 -4.3575 10 6 8.1541 1.7851 -4.1943 11 6 8.2610 2.0451 -2.6741 12 1 8.9888 1.3738 -2.2183 13 6 8.6274 3.5049 -2.3991 14 7 10.0031 3.7541 -2.8368 15 6 10.5450 4.9795 -2.6918 16 8 9.8935 5.8762 -2.1994 17 6 11.9599 5.2358 -3.1425 18 16 12.3939 6.9624 -2.8156 19 6 14.0480 6.9823 -3.4224 20 1 14.4822 6.0842 -3.8363 21 6 14.7934 8.1519 -3.3675 22 7 14.2642 9.2463 -2.8625 23 14 16.5472 8.1729 -4.0101 24 1 16.5509 7.8124 -5.4507 25 1 17.1209 9.5318 -3.8389 26 1 17.3639 7.1911 -3.2520 27 6 6.8320 1.7329 -2.1635 28 1 -1.0500 0.0002 0.0001 29 1 3.0098 -0.9518 0.3855 30 1 3.0090 0.8109 0.6323 31 1 2.5039 0.2948 -2.0979 32 1 4.5113 1.3206 -3.4434 33 1 4.6907 -0.4408 -3.6256 34 1 6.1762 1.3310 -4.9594 35 1 7.2576 -0.0832 -4.8339 36 1 7.9814 2.7202 -4.7269 37 1 9.0609 1.3037 -4.5605 38 1 7.9482 4.1592 -2.9457 39 1 8.5440 3.7054 -1.3310 40 1 10.5242 3.0367 -3.2303 41 1 12.6393 4.5812 -2.5967 42 1 12.0428 5.0360 -4.2108 43 1 14.7850 10.0638 -2.8245 44 1 6.8511 1.4630 -1.1076 45 1 6.1691 2.5814 -2.3327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481079001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:34 Heat of formation + Delta-G solvation = -39.080304 kcal Electronic energy + Delta-G solvation = -25357.387161 eV Core-core repulsion = 21501.535597 eV Total energy + Delta-G solvation = -3855.851564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.20983 -40.62915 -39.41208 -36.55159 -36.03730 -34.57556 -33.74679 -33.23015 -31.27565 -30.02154 -29.09592 -27.69414 -26.92876 -25.38890 -22.47551 -21.69782 -21.42391 -21.29555 -19.80283 -19.60921 -18.05727 -17.83599 -17.48284 -17.11287 -16.87355 -16.83420 -16.74608 -16.41194 -15.89383 -15.69272 -15.31044 -14.96232 -14.74711 -14.66424 -14.43096 -14.32612 -14.06861 -13.99243 -13.41503 -13.23113 -13.16018 -12.91709 -12.85210 -12.64208 -12.45167 -12.11715 -11.92686 -11.79024 -11.72901 -11.53071 -11.47625 -11.11908 -10.95916 -10.77810 -10.27211 -10.15732 -10.12646 -9.40461 -8.66149 -8.33565 -6.11968 1.27589 1.38022 1.44941 1.47641 1.57506 1.57937 1.61539 1.80772 2.25429 2.29708 2.41585 3.00585 3.01000 3.32503 3.33327 3.61329 3.66587 3.80210 3.88827 4.03561 4.26067 4.29218 4.31263 4.35823 4.36864 4.46555 4.51913 4.52823 4.54032 4.66930 4.72210 4.80111 4.98132 5.00262 5.06790 5.19389 5.27350 5.32236 5.42456 5.44123 5.80688 5.92401 6.20577 6.49045 6.51189 6.55088 7.07561 7.20191 7.24640 8.75486 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028946 B = 0.001537 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.102588 B =18209.048726 C =18848.541803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.248 4.248 3 C 0.232 3.768 4 N -0.720 5.720 5 C 0.511 3.489 6 O -0.561 6.561 7 C 0.030 3.970 8 N -0.515 5.515 9 C 0.039 3.961 10 C -0.126 4.126 11 C -0.092 4.092 12 H 0.093 0.907 13 C 0.134 3.866 14 N -0.709 5.709 15 C 0.533 3.467 16 O -0.568 6.568 17 C -0.129 4.129 18 S -0.153 6.153 19 C -0.548 4.548 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.261 1.261 25 H -0.279 1.279 26 H -0.262 1.262 27 C 0.047 3.953 28 H 0.252 0.748 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.416 0.584 32 H 0.086 0.914 33 H 0.133 0.867 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.417 0.583 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.271 0.729 44 H 0.080 0.920 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.036 -25.290 -3.711 36.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.248 4.248 3 C 0.110 3.890 4 N -0.374 5.374 5 C 0.298 3.702 6 O -0.439 6.439 7 C -0.101 4.101 8 N -0.240 5.240 9 C -0.088 4.088 10 C -0.164 4.164 11 C -0.112 4.112 12 H 0.111 0.889 13 C 0.010 3.990 14 N -0.363 5.363 15 C 0.319 3.681 16 O -0.447 6.447 17 C -0.280 4.280 18 S 0.074 5.926 19 C -0.696 4.696 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.081 4.081 28 H 0.269 0.731 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.253 0.747 32 H 0.104 0.896 33 H 0.151 0.849 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.254 0.746 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -26.338 -24.245 -1.995 35.853 hybrid contribution 1.003 -0.038 -1.206 1.569 sum -25.335 -24.283 -3.201 35.239 Atomic orbital electron populations 1.25863 0.96741 0.98741 0.95291 1.23005 0.94518 1.02728 1.04594 1.17933 0.83781 1.02806 0.84499 1.45886 1.07001 1.74560 1.09973 1.20988 0.81808 0.75522 0.91846 1.90719 1.55944 1.49712 1.47522 1.22290 0.89473 1.05231 0.93120 1.64698 1.09514 1.39892 1.09864 1.22939 0.96547 1.00087 0.89200 1.22525 0.99601 0.99931 0.94364 1.22191 0.97762 0.93777 0.97434 0.88873 1.21298 0.82143 0.96190 0.99405 1.45696 1.15414 1.11163 1.64026 1.20096 0.87830 0.82661 0.77560 1.90692 1.63565 1.45297 1.45142 1.23369 0.96233 1.02533 1.05877 1.85589 1.16950 1.07753 1.82318 1.23186 0.98813 1.00260 1.47298 0.89842 1.26129 1.04059 0.93965 0.94906 1.70185 1.39293 1.01533 1.43803 0.85004 0.76134 0.77745 0.79109 1.18564 1.20411 1.18692 1.23246 0.94391 0.91287 0.99167 0.73129 0.89526 0.89954 0.74700 0.89613 0.84903 0.92069 0.88805 0.91113 0.89259 0.92228 0.92904 0.74628 0.87234 0.86968 0.92008 0.90133 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 19.25 74.32 1.43 0.38 16 2 C -0.25 -2.66 13.46 31.13 0.42 -2.24 16 3 C 0.23 2.85 6.15 84.57 0.52 3.37 16 4 N -0.72 -7.50 5.54 -472.10 -2.61 -10.12 16 5 C 0.51 7.88 7.46 87.66 0.65 8.54 16 6 O -0.56 -13.83 14.30 -3.05 -0.04 -13.87 16 7 C 0.03 0.30 5.31 85.56 0.45 0.76 16 8 N -0.52 -7.80 5.11 -886.25 -4.53 -12.33 16 9 C 0.04 0.43 6.70 86.45 0.58 1.01 16 10 C -0.13 -1.64 6.31 31.48 0.20 -1.44 16 11 C -0.09 -1.59 3.08 -9.59 -0.03 -1.62 16 12 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 13 C 0.13 3.14 5.01 86.38 0.43 3.57 16 14 N -0.71 -18.18 5.43 -463.07 -2.51 -20.70 16 15 C 0.53 20.00 7.85 87.66 0.69 20.69 16 16 O -0.57 -27.01 15.86 -3.05 -0.05 -27.06 16 17 C -0.13 -5.14 6.16 71.23 0.44 -4.70 16 18 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 19 C -0.55 -31.47 9.50 67.96 0.65 -30.82 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.81 5.49 84.86 0.47 1.28 16 22 N -0.91 -56.41 13.22 21.65 0.29 -56.12 16 23 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 27 C 0.05 0.88 5.05 86.55 0.44 1.31 16 28 H 0.25 -0.18 7.80 -4.42 -0.03 -0.22 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.42 1.99 8.45 -92.71 -0.78 1.21 16 32 H 0.09 0.55 7.99 -2.39 -0.02 0.53 16 33 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.50 7.68 -2.39 -0.02 0.49 16 35 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 1.00 7.76 -2.39 -0.02 0.98 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 38 H 0.06 1.50 8.02 -2.39 -0.02 1.48 16 39 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.42 7.74 8.41 -92.70 -0.78 6.96 16 41 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 42 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 43 H 0.27 15.59 8.31 -92.71 -0.77 14.81 16 44 H 0.08 1.92 6.45 -2.39 -0.02 1.91 16 45 H 0.04 0.81 7.93 -2.39 -0.02 0.79 16 Total: -1.00 -84.89 397.58 -1.82 -86.71 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -0.55 Total: 17.45 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 7.33 Total: 0.09 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -9.38 Total: -99.27 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -0.09 Total: -40.93 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -84.89 -1.82 -86.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481079001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.630 kcal (2) G-P(sol) polarization free energy of solvation -84.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds