Wall clock time and date at job start Wed Apr 1 2020 01:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46870 * 2 1 4 4 H 1.09005 * 109.47247 * 302.96128 * 3 2 1 5 5 C 1.53009 * 109.47116 * 182.96378 * 3 2 1 6 6 N 1.46500 * 109.47223 * 184.99706 * 5 3 2 7 7 C 1.34769 * 119.99890 * 180.02562 * 6 5 3 8 8 O 1.21702 * 120.00359 * 359.97438 * 7 6 5 9 9 C 1.46584 * 120.00118 * 180.02562 * 7 6 5 10 10 S 1.75830 * 125.45771 * 359.97438 * 9 7 6 11 11 C 1.70615 * 91.56504 * 180.02562 * 10 9 7 12 12 C 1.33817 * 110.95309 * 359.73205 * 11 10 9 13 13 C 1.36644 * 125.46035 * 180.02562 * 9 7 6 14 14 C 1.50709 * 123.35263 * 359.97438 * 13 9 7 15 15 N 1.46899 * 109.47498 * 62.96617 * 3 2 1 16 16 C 1.46895 * 110.99947 * 65.51793 * 15 3 2 17 17 C 1.50704 * 109.47176 * 182.18487 * 16 15 3 18 18 O 1.21292 * 119.99991 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00038 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99641 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00331 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99382 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99403 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00251 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46918 * 90.00197 * 24 22 20 26 26 H 1.48503 * 109.46918 * 209.99900 * 24 22 20 27 27 H 1.48498 * 109.47238 * 330.00128 * 24 22 20 28 28 H 1.09002 * 109.47339 * 174.77826 * 1 2 3 29 29 H 1.09001 * 109.47510 * 294.77918 * 1 2 3 30 30 H 1.09004 * 109.46954 * 54.77831 * 1 2 3 31 31 H 1.08996 * 109.47481 * 240.00147 * 2 1 3 32 32 H 1.08997 * 109.47104 * 119.99599 * 2 1 3 33 33 H 1.08998 * 109.46790 * 64.99882 * 5 3 2 34 34 H 1.08994 * 109.46693 * 305.00432 * 5 3 2 35 35 H 0.96997 * 119.99653 * 0.02562 * 6 5 3 36 36 H 1.07999 * 124.52461 * 180.02562 * 11 10 9 37 37 H 1.07997 * 122.45361 * 180.25974 * 12 11 10 38 38 H 1.08998 * 109.46688 * 90.00257 * 14 13 9 39 39 H 1.08994 * 109.47200 * 210.00027 * 14 13 9 40 40 H 1.09001 * 109.46810 * 330.00983 * 14 13 9 41 41 H 1.00894 * 111.00043 * 189.47494 * 15 3 2 42 42 H 1.08997 * 109.47410 * 302.18849 * 16 15 3 43 43 H 1.09005 * 109.47077 * 62.18582 * 16 15 3 44 44 H 0.97003 * 120.00095 * 359.97438 * 19 17 16 45 45 H 0.97001 * 119.99603 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6338 1.9715 -0.8623 5 6 3.5682 1.4432 -0.0746 6 7 4.0623 2.8171 0.0455 7 6 5.3869 3.0627 0.0060 8 8 6.1726 2.1431 -0.1289 9 6 5.8814 4.4373 0.1267 10 16 4.8791 5.8680 0.3265 11 6 6.2513 6.8812 0.3654 12 6 7.3766 6.1678 0.2408 13 6 7.1952 4.8123 0.1009 14 6 8.3324 3.8363 -0.0583 15 7 1.6097 2.1141 1.2336 16 6 2.2439 1.5077 2.4117 17 6 1.7386 2.1859 3.6591 18 8 0.9294 3.0855 3.5750 19 7 2.1859 1.7928 4.8682 20 6 1.7259 2.4095 6.0030 21 1 1.0054 3.2105 5.9281 22 6 2.1867 2.0038 7.2495 23 7 1.7453 2.5945 8.3372 24 14 3.4323 0.6178 7.3792 25 1 4.8057 1.1806 7.3306 26 1 3.2382 -0.1037 8.6625 27 1 3.2434 -0.3250 6.2476 28 1 -0.3634 -1.0234 -0.0935 29 1 -0.3634 0.4307 0.9330 30 1 -0.3633 0.5927 -0.8396 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8855 1.0252 -1.0299 34 1 3.9718 0.8395 0.7382 35 1 3.4362 3.5500 0.1534 36 1 6.2166 7.9545 0.4804 37 1 8.3555 6.6239 0.2457 38 1 8.5559 3.7085 -1.1175 39 1 9.2142 4.2190 0.4555 40 1 8.0495 2.8755 0.3718 41 1 1.7982 3.1043 1.1909 42 1 1.9988 0.4464 2.4505 43 1 3.3251 1.6287 2.3450 44 1 2.8328 1.0731 4.9356 45 1 2.0672 2.3116 9.2074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481785903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:09 Heat of formation + Delta-G solvation = -37.805745 kcal Electronic energy + Delta-G solvation = -27288.718440 eV Core-core repulsion = 23432.922146 eV Total energy + Delta-G solvation = -3855.796295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 5.38 seconds Orbital eigenvalues (eV) -40.23006 -38.92191 -38.05889 -37.24058 -34.21924 -33.94042 -32.08492 -31.62262 -31.17083 -29.47230 -27.86206 -26.57138 -24.24044 -23.90797 -23.25765 -21.36834 -20.38793 -19.38596 -19.05135 -18.43473 -18.34317 -16.84540 -16.21078 -16.00997 -15.66164 -15.41479 -15.18600 -14.79730 -14.48339 -14.20302 -13.92806 -13.84211 -13.68464 -13.33766 -13.20517 -13.15876 -12.78768 -12.56500 -12.49185 -12.32066 -12.07285 -12.00248 -11.98072 -11.65372 -11.38971 -11.14844 -11.09720 -10.93750 -10.67570 -10.58372 -10.06041 -9.97558 -9.56718 -9.40319 -8.99137 -8.66043 -8.63223 -8.22844 -8.16556 -6.31184 -3.82358 0.29016 1.26496 1.65587 2.14518 2.87928 3.02343 3.03537 3.07997 3.15917 3.73878 4.05231 4.11245 4.49976 4.60200 4.65043 4.71932 4.96097 4.98774 5.04124 5.08667 5.20919 5.27703 5.33291 5.42349 5.50600 5.54400 5.65197 5.68538 5.69836 5.76994 5.80273 5.86050 5.92689 6.00823 6.09888 6.13740 6.20695 6.30991 6.48860 6.99035 7.18707 7.42848 7.57914 7.95657 8.14308 8.59623 8.94941 9.42676 9.82579 10.81902 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008288 B = 0.003780 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3377.535896 B = 7406.451911 C = 9130.535771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C 0.075 3.925 4 H 0.091 0.909 5 C 0.081 3.919 6 N -0.726 5.726 7 C 0.595 3.405 8 O -0.527 6.527 9 C -0.281 4.281 10 S 0.207 5.793 11 C -0.224 4.224 12 C -0.151 4.151 13 C -0.019 4.019 14 C -0.105 4.105 15 N -0.652 5.652 16 C 0.039 3.961 17 C 0.451 3.549 18 O -0.564 6.564 19 N -0.590 5.590 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.043 3.957 23 N -0.881 5.881 24 Si 0.877 3.123 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.396 0.604 36 H 0.170 0.830 37 H 0.145 0.855 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.345 0.655 42 H 0.091 0.909 43 H 0.048 0.952 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.499 1.593 -20.748 22.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.036 4.036 4 H 0.109 0.891 5 C -0.044 4.044 6 N -0.379 5.379 7 C 0.382 3.618 8 O -0.405 6.405 9 C -0.401 4.401 10 S 0.475 5.525 11 C -0.362 4.362 12 C -0.183 4.183 13 C -0.035 4.035 14 C -0.164 4.164 15 N -0.284 5.284 16 C -0.093 4.093 17 C 0.236 3.764 18 O -0.446 6.446 19 N -0.230 5.230 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.160 4.160 23 N -0.521 5.521 24 Si 0.704 3.296 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.231 0.769 36 H 0.188 0.812 37 H 0.163 0.837 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.165 0.835 42 H 0.109 0.891 43 H 0.066 0.934 44 H 0.202 0.798 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.302 1.475 -20.478 21.791 hybrid contribution 3.232 -0.377 0.315 3.269 sum 10.534 1.098 -20.164 22.776 Atomic orbital electron populations 1.21622 0.94470 1.00649 1.03200 1.21498 0.97466 0.94105 1.02005 1.22023 0.90223 0.97401 0.93934 0.89088 1.22241 0.96599 0.82568 1.02995 1.45841 1.06772 1.10047 1.75207 1.16869 0.82103 0.86600 0.76213 1.90773 1.55200 1.44799 1.49765 1.24393 0.97839 0.97385 1.20495 1.83180 1.07938 0.94831 1.66505 1.25301 0.97482 1.05257 1.08157 1.19930 0.99820 0.92640 1.05903 1.19527 0.93628 0.94581 0.95718 1.20738 0.94175 0.98904 1.02552 1.60203 1.60789 1.07479 0.99883 1.21830 0.96695 1.00173 0.90615 1.19677 0.85895 0.86917 0.83872 1.90561 1.35657 1.32194 1.86210 1.42212 1.40615 1.33942 1.06192 1.19423 1.24480 1.17402 0.81996 0.86260 1.25022 0.97958 0.97951 0.95107 1.69621 1.43226 1.41362 0.97898 0.86706 0.82068 0.82311 0.78543 1.19656 1.20117 1.19467 0.93489 0.90967 0.93105 0.91695 0.91523 0.90766 0.90644 0.76866 0.81242 0.83739 0.90760 0.91616 0.88873 0.83474 0.89086 0.93429 0.79755 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.71 37.16 0.36 -1.14 16 2 C -0.11 -1.11 5.29 -26.73 -0.14 -1.25 16 3 C 0.08 0.78 2.73 -67.71 -0.18 0.60 16 4 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 5 C 0.08 0.88 4.47 -4.04 -0.02 0.86 16 6 N -0.73 -8.39 5.31 -61.65 -0.33 -8.72 16 7 C 0.60 8.05 7.78 -12.90 -0.10 7.95 16 8 O -0.53 -8.33 14.24 5.19 0.07 -8.26 16 9 C -0.28 -3.45 6.45 -36.79 -0.24 -3.68 16 10 S 0.21 2.07 22.16 -107.50 -2.38 -0.31 16 11 C -0.22 -2.01 10.92 29.18 0.32 -1.69 16 12 C -0.15 -1.44 9.97 -41.41 -0.41 -1.85 16 13 C -0.02 -0.22 5.90 -105.47 -0.62 -0.84 16 14 C -0.11 -1.10 9.55 36.01 0.34 -0.76 16 15 N -0.65 -9.04 5.38 -107.99 -0.58 -9.62 16 16 C 0.04 0.63 5.32 -4.98 -0.03 0.61 16 17 C 0.45 10.04 7.82 -10.98 -0.09 9.96 16 18 O -0.56 -14.71 15.83 5.55 0.09 -14.62 16 19 N -0.59 -14.07 5.09 -10.96 -0.06 -14.13 16 20 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16 21 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 22 C 0.04 1.17 5.50 -17.47 -0.10 1.08 16 23 N -0.88 -25.78 13.96 55.50 0.77 -25.01 16 24 Si 0.88 19.65 27.74 -169.99 -4.71 14.93 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.27 -5.52 6.52 56.52 0.37 -5.16 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.70 6.36 -51.93 -0.33 0.37 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.92 6.68 -51.93 -0.35 0.57 16 35 H 0.40 4.15 6.34 -40.82 -0.26 3.89 16 36 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.09 1.18 6.01 -51.93 -0.31 0.87 16 41 H 0.35 4.88 7.24 -39.29 -0.28 4.60 16 42 H 0.09 1.34 6.29 -51.93 -0.33 1.01 16 43 H 0.05 0.73 6.41 -51.93 -0.33 0.39 16 44 H 0.37 7.88 5.76 -40.82 -0.24 7.64 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 379.77 15.07 5.72 5.72 Total: -1.00 -33.73 379.77 -8.65 -42.38 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -6.20 Total: 16.54 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -1.05 Total: 1.08 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.19 Total: -57.47 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.16 Total: -22.88 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.71 Total: 14.93 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.38 Total: -0.31 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.73 -8.65 -42.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481785903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.579 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.38 seconds