Wall clock time and date at job start Wed Apr 1 2020 01:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46870 * 2 1 4 4 H 1.09005 * 109.47247 * 302.96128 * 3 2 1 5 5 C 1.53009 * 109.47116 * 182.96378 * 3 2 1 6 6 N 1.46500 * 109.47223 * 184.99706 * 5 3 2 7 7 C 1.34769 * 119.99890 * 180.02562 * 6 5 3 8 8 O 1.21702 * 120.00359 * 359.97438 * 7 6 5 9 9 C 1.46584 * 120.00118 * 180.02562 * 7 6 5 10 10 S 1.75830 * 125.45771 * 359.97438 * 9 7 6 11 11 C 1.70615 * 91.56504 * 180.02562 * 10 9 7 12 12 C 1.33817 * 110.95309 * 359.73205 * 11 10 9 13 13 C 1.36644 * 125.46035 * 180.02562 * 9 7 6 14 14 C 1.50709 * 123.35263 * 359.97438 * 13 9 7 15 15 N 1.46899 * 109.47498 * 62.96617 * 3 2 1 16 16 C 1.46895 * 110.99947 * 65.51793 * 15 3 2 17 17 C 1.50704 * 109.47176 * 182.18487 * 16 15 3 18 18 O 1.21292 * 119.99991 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00038 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99641 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00331 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99382 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99403 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00251 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46918 * 90.00197 * 24 22 20 26 26 H 1.48503 * 109.46918 * 209.99900 * 24 22 20 27 27 H 1.48498 * 109.47238 * 330.00128 * 24 22 20 28 28 H 1.09002 * 109.47339 * 174.77826 * 1 2 3 29 29 H 1.09001 * 109.47510 * 294.77918 * 1 2 3 30 30 H 1.09004 * 109.46954 * 54.77831 * 1 2 3 31 31 H 1.08996 * 109.47481 * 240.00147 * 2 1 3 32 32 H 1.08997 * 109.47104 * 119.99599 * 2 1 3 33 33 H 1.08998 * 109.46790 * 64.99882 * 5 3 2 34 34 H 1.08994 * 109.46693 * 305.00432 * 5 3 2 35 35 H 0.96997 * 119.99653 * 0.02562 * 6 5 3 36 36 H 1.07999 * 124.52461 * 180.02562 * 11 10 9 37 37 H 1.07997 * 122.45361 * 180.25974 * 12 11 10 38 38 H 1.08998 * 109.46688 * 90.00257 * 14 13 9 39 39 H 1.08994 * 109.47200 * 210.00027 * 14 13 9 40 40 H 1.09001 * 109.46810 * 330.00983 * 14 13 9 41 41 H 1.00894 * 111.00043 * 189.47494 * 15 3 2 42 42 H 1.08997 * 109.47410 * 302.18849 * 16 15 3 43 43 H 1.09005 * 109.47077 * 62.18582 * 16 15 3 44 44 H 0.97003 * 120.00095 * 359.97438 * 19 17 16 45 45 H 0.97001 * 119.99603 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6338 1.9715 -0.8623 5 6 3.5682 1.4432 -0.0746 6 7 4.0623 2.8171 0.0455 7 6 5.3869 3.0627 0.0060 8 8 6.1726 2.1431 -0.1289 9 6 5.8814 4.4373 0.1267 10 16 4.8791 5.8680 0.3265 11 6 6.2513 6.8812 0.3654 12 6 7.3766 6.1678 0.2408 13 6 7.1952 4.8123 0.1009 14 6 8.3324 3.8363 -0.0583 15 7 1.6097 2.1141 1.2336 16 6 2.2439 1.5077 2.4117 17 6 1.7386 2.1859 3.6591 18 8 0.9294 3.0855 3.5750 19 7 2.1859 1.7928 4.8682 20 6 1.7259 2.4095 6.0030 21 1 1.0054 3.2105 5.9281 22 6 2.1867 2.0038 7.2495 23 7 1.7453 2.5945 8.3372 24 14 3.4323 0.6178 7.3792 25 1 4.8057 1.1806 7.3306 26 1 3.2382 -0.1037 8.6625 27 1 3.2434 -0.3250 6.2476 28 1 -0.3634 -1.0234 -0.0935 29 1 -0.3634 0.4307 0.9330 30 1 -0.3633 0.5927 -0.8396 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8855 1.0252 -1.0299 34 1 3.9718 0.8395 0.7382 35 1 3.4362 3.5500 0.1534 36 1 6.2166 7.9545 0.4804 37 1 8.3555 6.6239 0.2457 38 1 8.5559 3.7085 -1.1175 39 1 9.2142 4.2190 0.4555 40 1 8.0495 2.8755 0.3718 41 1 1.7982 3.1043 1.1909 42 1 1.9988 0.4464 2.4505 43 1 3.3251 1.6287 2.3450 44 1 2.8328 1.0731 4.9356 45 1 2.0672 2.3116 9.2074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481785903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:04 Heat of formation + Delta-G solvation = -63.424780 kcal Electronic energy + Delta-G solvation = -27289.829365 eV Core-core repulsion = 23432.922146 eV Total energy + Delta-G solvation = -3856.907219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 3.99 seconds Orbital eigenvalues (eV) -41.21967 -40.37787 -39.15942 -38.34051 -36.01629 -35.12953 -33.76682 -33.10332 -31.95062 -30.41032 -28.97257 -27.86292 -25.90305 -24.83014 -24.06093 -22.27668 -21.65328 -21.00729 -20.27309 -19.88654 -19.17211 -18.30379 -17.24147 -17.05454 -16.90522 -16.67860 -16.45519 -15.96251 -15.79367 -15.49831 -15.06549 -14.88425 -14.73680 -14.64460 -14.30465 -14.29440 -14.08046 -13.99752 -13.69449 -13.34733 -13.17447 -13.08315 -12.92778 -12.75630 -12.67020 -12.43305 -12.27184 -12.00562 -11.87122 -11.78273 -11.55403 -11.50492 -11.05487 -10.44994 -10.34681 -10.25341 -9.79318 -9.43591 -9.40846 -8.42501 -6.02344 -0.52609 0.47805 0.89847 1.27755 1.32059 1.35342 1.40571 1.93609 1.97915 2.08931 2.20194 2.70828 3.14040 3.37155 3.63411 3.76060 3.94239 3.99922 4.09453 4.21697 4.24498 4.33018 4.36545 4.40110 4.53608 4.62436 4.67301 4.69176 4.76640 4.92828 4.95998 4.98434 5.05226 5.20035 5.25006 5.34632 5.38696 5.48988 5.50739 5.60600 5.87995 5.99673 6.25270 6.32312 6.58122 6.87136 6.99622 7.38664 7.94241 8.74972 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008288 B = 0.003780 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3377.535896 B = 7406.451911 C = 9130.535771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C 0.084 3.916 4 H 0.110 0.890 5 C 0.084 3.916 6 N -0.721 5.721 7 C 0.590 3.410 8 O -0.558 6.558 9 C -0.314 4.314 10 S 0.209 5.791 11 C -0.215 4.215 12 C -0.160 4.160 13 C -0.026 4.026 14 C -0.103 4.103 15 N -0.662 5.662 16 C 0.058 3.942 17 C 0.451 3.549 18 O -0.606 6.606 19 N -0.593 5.593 20 C -0.325 4.325 21 H 0.059 0.941 22 C -0.011 4.011 23 N -0.932 5.932 24 Si 0.957 3.043 25 H -0.261 1.261 26 H -0.272 1.272 27 H -0.234 1.234 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.401 0.599 36 H 0.198 0.802 37 H 0.170 0.830 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.343 0.657 42 H 0.113 0.887 43 H 0.063 0.937 44 H 0.386 0.614 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.434 0.367 -22.579 25.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C -0.026 4.026 4 H 0.128 0.872 5 C -0.040 4.040 6 N -0.373 5.373 7 C 0.378 3.622 8 O -0.439 6.439 9 C -0.434 4.434 10 S 0.477 5.523 11 C -0.353 4.353 12 C -0.190 4.190 13 C -0.042 4.042 14 C -0.161 4.161 15 N -0.294 5.294 16 C -0.074 4.074 17 C 0.239 3.761 18 O -0.490 6.490 19 N -0.235 5.235 20 C -0.455 4.455 21 H 0.078 0.922 22 C -0.210 4.210 23 N -0.573 5.573 24 Si 0.777 3.223 25 H -0.185 1.185 26 H -0.197 1.197 27 H -0.158 1.158 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.237 0.763 36 H 0.215 0.785 37 H 0.187 0.813 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.162 0.838 42 H 0.131 0.869 43 H 0.080 0.920 44 H 0.221 0.779 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.214 0.244 -22.344 24.170 hybrid contribution 2.532 0.156 0.814 2.665 sum 11.746 0.400 -21.530 24.529 Atomic orbital electron populations 1.21578 0.95094 1.01200 1.01794 1.21531 0.96771 0.93569 1.03073 1.22092 0.89972 0.97861 0.92636 0.87243 1.22251 0.96502 0.82091 1.03200 1.45841 1.06394 1.10571 1.74516 1.17123 0.82360 0.86945 0.75782 1.90749 1.55917 1.45778 1.51431 1.24461 0.98791 0.97572 1.22593 1.83148 1.08346 0.94305 1.66467 1.25703 0.96656 1.06498 1.06432 1.20170 1.01198 0.91839 1.05817 1.19859 0.93563 0.95713 0.95108 1.20711 0.94717 0.97676 1.03013 1.60206 1.61134 1.07564 1.00502 1.21656 0.97172 1.00439 0.88147 1.20874 0.84261 0.85814 0.85154 1.90540 1.37337 1.34049 1.87113 1.42070 1.41373 1.34536 1.05510 1.19010 1.24676 1.17332 0.84437 0.92247 1.26002 1.00105 1.00993 0.93854 1.69790 1.45110 1.43536 0.98821 0.85479 0.78506 0.78528 0.79780 1.18545 1.19724 1.15793 0.92424 0.94095 0.92333 0.89131 0.91962 0.89672 0.91620 0.76318 0.78484 0.81267 0.90124 0.89618 0.91311 0.83802 0.86904 0.91967 0.77861 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.71 71.98 0.70 -1.97 16 2 C -0.11 -1.87 5.29 30.59 0.16 -1.70 16 3 C 0.08 1.55 2.73 44.92 0.12 1.68 16 4 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 5 C 0.08 1.66 4.47 86.38 0.39 2.05 16 6 N -0.72 -15.88 5.31 -467.17 -2.48 -18.36 16 7 C 0.59 15.69 7.78 86.42 0.67 16.36 16 8 O -0.56 -17.55 14.24 -4.36 -0.06 -17.61 16 9 C -0.31 -7.52 6.45 24.08 0.16 -7.37 16 10 S 0.21 3.97 22.16 -56.49 -1.25 2.71 16 11 C -0.22 -3.37 10.92 66.81 0.73 -2.64 16 12 C -0.16 -2.69 9.97 21.08 0.21 -2.48 16 13 C -0.03 -0.57 5.90 -20.42 -0.12 -0.69 16 14 C -0.10 -2.07 9.55 71.24 0.68 -1.39 16 15 N -0.66 -17.55 5.38 -495.56 -2.66 -20.21 16 16 C 0.06 1.78 5.32 85.56 0.46 2.24 16 17 C 0.45 20.23 7.82 87.66 0.69 20.92 16 18 O -0.61 -32.71 15.83 -3.07 -0.05 -32.76 16 19 N -0.59 -28.33 5.09 -306.97 -1.56 -29.89 16 20 C -0.33 -19.11 10.16 84.04 0.85 -18.25 16 21 H 0.06 4.12 7.39 -2.91 -0.02 4.10 16 22 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 23 N -0.93 -56.31 13.96 21.66 0.30 -56.01 16 24 Si 0.96 39.73 27.74 68.60 1.90 41.64 16 25 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 27 H -0.23 -8.35 6.52 99.48 0.65 -7.71 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.04 1.04 7.85 -2.39 -0.02 1.02 16 30 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.12 6.36 -2.39 -0.02 1.10 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.45 6.68 -2.39 -0.02 1.44 16 35 H 0.40 8.05 6.34 -92.71 -0.59 7.46 16 36 H 0.20 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 1.75 6.01 -2.39 -0.01 1.73 16 41 H 0.34 9.46 7.24 -89.70 -0.65 8.81 16 42 H 0.11 3.03 6.29 -2.39 -0.02 3.02 16 43 H 0.06 1.77 6.41 -2.38 -0.02 1.76 16 44 H 0.39 15.72 5.76 -92.71 -0.53 15.19 16 45 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -78.21 379.77 -0.48 -78.70 By element: Atomic # 1 Polarization: 45.95 SS G_CDS: -0.78 Total: 45.17 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 6.16 Total: 6.62 kcal Atomic # 7 Polarization: -118.07 SS G_CDS: -6.40 Total: -124.47 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -0.11 Total: -50.37 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 1.90 Total: 41.64 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.25 Total: 2.71 kcal Total: -78.21 -0.48 -78.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481785903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.272 kcal (2) G-P(sol) polarization free energy of solvation -78.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.99 seconds