Wall clock time and date at job start Wed Apr 1 2020 01:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47663 * 2 1 4 4 H 1.09003 * 109.46687 * 55.37582 * 3 2 1 5 5 C 1.52996 * 109.47358 * 175.37586 * 3 2 1 6 6 N 1.46503 * 109.47336 * 175.00413 * 5 3 2 7 7 C 1.34775 * 120.00378 * 180.02562 * 6 5 3 8 8 O 1.21708 * 119.99576 * 359.97438 * 7 6 5 9 9 C 1.46580 * 120.00256 * 179.97438 * 7 6 5 10 10 C 1.36649 * 125.45770 * 179.97438 * 9 7 6 11 11 C 1.37472 * 113.29231 * 179.80823 * 10 9 7 12 12 C 1.33814 * 115.10577 * 0.42344 * 11 10 9 13 13 C 1.50696 * 124.52320 * 179.85280 * 12 11 10 14 14 S 1.70618 * 110.95316 * 359.58823 * 12 11 10 15 15 N 1.46897 * 109.47296 * 295.38036 * 3 2 1 16 16 C 1.46907 * 110.99851 * 302.88096 * 15 3 2 17 17 C 1.50703 * 109.47002 * 185.63364 * 16 15 3 18 18 O 1.21288 * 119.99948 * 0.02562 * 17 16 15 19 19 N 1.34771 * 119.99643 * 179.97438 * 17 16 15 20 20 C 1.37105 * 119.99905 * 180.02562 * 19 17 16 21 21 H 1.07994 * 119.99744 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99991 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00175 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99806 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47082 * 90.00535 * 24 22 20 26 26 H 1.48508 * 109.47216 * 210.00354 * 24 22 20 27 27 H 1.48501 * 109.47422 * 329.99989 * 24 22 20 28 28 H 1.09004 * 109.46913 * 58.72717 * 1 2 3 29 29 H 1.09001 * 109.47600 * 178.72852 * 1 2 3 30 30 H 1.09000 * 109.47042 * 298.73231 * 1 2 3 31 31 H 1.09007 * 109.46937 * 240.00209 * 2 1 3 32 32 H 1.09003 * 109.47374 * 120.00919 * 2 1 3 33 33 H 1.09003 * 109.47224 * 55.00148 * 5 3 2 34 34 H 1.09004 * 109.47399 * 295.00614 * 5 3 2 35 35 H 0.97000 * 119.99655 * 359.97438 * 6 5 3 36 36 H 1.08000 * 123.35290 * 0.03212 * 10 9 7 37 37 H 1.07998 * 122.44665 * 180.26414 * 11 10 9 38 38 H 1.08999 * 109.47177 * 179.72007 * 13 12 11 39 39 H 1.09007 * 109.47192 * 59.72492 * 13 12 11 40 40 H 1.08995 * 109.47681 * 299.72339 * 13 12 11 41 41 H 1.00902 * 111.00290 * 66.83327 * 15 3 2 42 42 H 1.08994 * 109.47250 * 305.63915 * 16 15 3 43 43 H 1.09001 * 109.47016 * 65.63857 * 16 15 3 44 44 H 0.96999 * 120.00525 * 0.02562 * 19 17 16 45 45 H 0.96999 * 120.00409 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6107 1.9796 0.8457 5 6 3.5656 1.4439 0.1163 6 7 4.0632 2.8166 -0.0035 7 6 5.3864 3.0626 0.0688 8 8 6.1678 2.1442 0.2339 9 6 5.8843 4.4360 -0.0516 10 6 7.1970 4.8111 0.0054 11 6 7.3822 6.1654 -0.1409 12 6 6.2609 6.8775 -0.3031 13 6 6.2172 8.3735 -0.4789 14 16 4.8879 5.8648 -0.2916 15 7 1.6437 2.1020 -1.2513 16 6 2.1484 1.3651 -2.4176 17 6 1.8429 2.1412 -3.6728 18 8 1.2624 3.2038 -3.6026 19 7 2.2157 1.6549 -4.8732 20 6 1.9383 2.3611 -6.0151 21 1 1.4214 3.3073 -5.9526 22 6 2.3231 1.8601 -7.2526 23 7 2.9525 0.7090 -7.3286 24 14 1.9458 2.8227 -8.8084 25 1 3.0733 3.7414 -9.1077 26 1 1.7611 1.8803 -9.9411 27 1 0.7028 3.6116 -8.6132 28 1 -0.3633 0.5335 -0.8784 29 1 -0.3634 -1.0274 -0.0228 30 1 -0.3633 0.4940 0.9011 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 3.9913 0.8324 -0.6794 34 1 3.8567 1.0350 1.0839 35 1 3.4404 3.5484 -0.1355 36 1 8.0085 4.1127 0.1475 37 1 8.3609 6.6216 -0.1236 38 1 5.1824 8.6957 -0.5950 39 1 6.7861 8.6519 -1.3661 40 1 6.6516 8.8552 0.3971 41 1 0.6421 2.2136 -1.2997 42 1 3.2263 1.2330 -2.3254 43 1 1.6656 0.3891 -2.4674 44 1 2.6803 0.8052 -4.9293 45 1 3.2208 0.3590 -8.1925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481785954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:39 Heat of formation + Delta-G solvation = -49.125076 kcal Electronic energy + Delta-G solvation = -26914.188521 eV Core-core repulsion = 23057.901383 eV Total energy + Delta-G solvation = -3856.287138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.82517 -38.69450 -37.81370 -37.16677 -34.13744 -33.85832 -32.18716 -31.77486 -31.15518 -29.15891 -27.30280 -26.36364 -24.30571 -23.88715 -23.14903 -21.15515 -20.47299 -19.38323 -18.87398 -17.95175 -17.82596 -16.83649 -16.29145 -15.70803 -15.56385 -15.13385 -14.87747 -14.82867 -14.28229 -14.17978 -14.12517 -13.85678 -13.69891 -13.48870 -13.24879 -13.16357 -12.64391 -12.49118 -12.31338 -12.14948 -11.93965 -11.88383 -11.77248 -11.49784 -11.36637 -11.07663 -10.95320 -10.87588 -10.78783 -10.39003 -10.20670 -10.01311 -9.49331 -9.07118 -8.68120 -8.63245 -8.50782 -8.08329 -7.94611 -6.40191 -3.81085 0.45561 1.40090 1.81350 2.32311 3.16211 3.18458 3.26962 3.30033 3.32411 3.92310 4.09888 4.33329 4.59680 4.60834 4.79372 4.94836 4.97487 5.00385 5.16414 5.21965 5.25054 5.26350 5.28006 5.41841 5.45348 5.57074 5.59087 5.68660 5.74262 5.80894 5.86688 5.89177 5.97772 6.07325 6.08886 6.18674 6.27508 6.27871 6.44976 7.12906 7.54831 7.56235 7.58961 8.07446 8.23349 8.62609 9.19257 9.56065 10.07312 10.77576 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007648 B = 0.003627 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3660.355537 B = 7718.864504 C =10150.501192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.090 0.910 5 C 0.128 3.872 6 N -0.709 5.709 7 C 0.589 3.411 8 O -0.540 6.540 9 C -0.269 4.269 10 C -0.055 4.055 11 C -0.160 4.160 12 C -0.201 4.201 13 C -0.085 4.085 14 S 0.221 5.779 15 N -0.659 5.659 16 C 0.043 3.957 17 C 0.442 3.558 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.408 0.592 36 H 0.151 0.849 37 H 0.142 0.858 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.353 0.647 42 H 0.086 0.914 43 H 0.049 0.951 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.243 6.055 17.931 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.108 0.892 5 C 0.004 3.996 6 N -0.360 5.360 7 C 0.375 3.625 8 O -0.420 6.420 9 C -0.389 4.389 10 C -0.088 4.088 11 C -0.191 4.191 12 C -0.321 4.321 13 C -0.143 4.143 14 S 0.489 5.511 15 N -0.292 5.292 16 C -0.089 4.089 17 C 0.228 3.772 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.245 0.755 36 H 0.168 0.832 37 H 0.160 0.840 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.173 0.827 42 H 0.104 0.896 43 H 0.067 0.933 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.389 6.712 17.769 19.144 hybrid contribution 0.947 -0.866 -0.951 1.597 sum 3.336 5.846 16.818 18.115 Atomic orbital electron populations 1.21756 0.95227 1.02015 1.02025 1.22206 0.96790 0.97832 1.03152 1.21926 0.94142 0.93697 0.94076 0.89192 1.21440 0.93029 0.83174 1.01992 1.45665 1.06613 1.10426 1.73313 1.16946 0.82398 0.86515 0.76601 1.90808 1.56049 1.44727 1.50366 1.24585 0.98334 0.97402 1.18628 1.20701 0.95469 0.95670 0.96962 1.19895 0.99313 0.93153 1.06724 1.24305 0.98210 1.01743 1.07812 1.20382 1.03251 0.87708 1.03003 1.83275 1.07383 0.94626 1.65786 1.60189 1.19534 1.49922 0.99564 1.21772 1.01184 0.95350 0.90633 1.19781 0.85270 0.87927 0.84257 1.90512 1.46004 1.23644 1.86514 1.41864 1.51551 1.21797 1.04844 1.19685 1.35236 1.04747 0.83194 0.87953 1.25251 0.96864 0.96381 0.99407 1.69610 1.39636 1.18656 1.26360 0.85877 0.78998 0.78971 0.80551 1.20409 1.20948 1.19430 0.92419 0.92467 0.92564 0.90933 0.91271 0.91111 0.91029 0.75544 0.83153 0.84023 0.91180 0.90220 0.90383 0.82660 0.89581 0.93343 0.77544 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.70 37.16 0.36 -1.08 16 2 C -0.16 -1.57 5.10 -26.73 -0.14 -1.71 16 3 C 0.07 0.80 2.70 -67.72 -0.18 0.62 16 4 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 5 C 0.13 1.59 4.76 -4.04 -0.02 1.57 16 6 N -0.71 -9.78 5.38 -61.65 -0.33 -10.11 16 7 C 0.59 9.23 7.78 -12.90 -0.10 9.13 16 8 O -0.54 -9.94 16.84 5.18 0.09 -9.85 16 9 C -0.27 -3.75 6.45 -36.79 -0.24 -3.98 16 10 C -0.05 -0.69 10.01 -40.43 -0.40 -1.10 16 11 C -0.16 -1.72 9.99 -41.41 -0.41 -2.13 16 12 C -0.20 -2.11 6.28 -35.86 -0.23 -2.34 16 13 C -0.09 -0.64 10.33 36.00 0.37 -0.27 16 14 S 0.22 2.61 22.08 -107.50 -2.37 0.23 16 15 N -0.66 -9.49 5.32 -107.99 -0.57 -10.07 16 16 C 0.04 0.73 5.31 -4.97 -0.03 0.71 16 17 C 0.44 10.26 7.83 -10.99 -0.09 10.17 16 18 O -0.58 -15.33 15.90 5.55 0.09 -15.25 16 19 N -0.56 -14.32 5.29 -10.97 -0.06 -14.38 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 24 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 H 0.06 0.62 6.87 -51.93 -0.36 0.26 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.79 6.23 -51.92 -0.32 0.47 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.99 6.61 -51.93 -0.34 0.65 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.41 5.43 7.25 -40.82 -0.30 5.14 16 36 H 0.15 1.81 8.06 -52.49 -0.42 1.38 16 37 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.35 5.14 7.29 -39.29 -0.29 4.86 16 42 H 0.09 1.47 6.22 -51.93 -0.32 1.15 16 43 H 0.05 0.75 6.48 -51.93 -0.34 0.42 16 44 H 0.39 9.64 7.90 -40.82 -0.32 9.31 16 45 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -32.99 387.71 -9.28 -42.27 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: -6.32 Total: 17.60 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -1.34 Total: 1.61 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.24 Total: -58.59 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: 0.18 Total: -25.09 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.37 Total: 0.23 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.99 -9.28 -42.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481785954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.852 kcal (2) G-P(sol) polarization free energy of solvation -32.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds