Wall clock time and date at job start Wed Apr 1 2020 01:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47663 * 2 1 4 4 H 1.09003 * 109.46687 * 55.37582 * 3 2 1 5 5 C 1.52996 * 109.47358 * 175.37586 * 3 2 1 6 6 N 1.46503 * 109.47336 * 175.00413 * 5 3 2 7 7 C 1.34775 * 120.00378 * 180.02562 * 6 5 3 8 8 O 1.21708 * 119.99576 * 359.97438 * 7 6 5 9 9 C 1.46580 * 120.00256 * 179.97438 * 7 6 5 10 10 C 1.36649 * 125.45770 * 179.97438 * 9 7 6 11 11 C 1.37472 * 113.29231 * 179.80823 * 10 9 7 12 12 C 1.33814 * 115.10577 * 0.42344 * 11 10 9 13 13 C 1.50696 * 124.52320 * 179.85280 * 12 11 10 14 14 S 1.70618 * 110.95316 * 359.58823 * 12 11 10 15 15 N 1.46897 * 109.47296 * 295.38036 * 3 2 1 16 16 C 1.46907 * 110.99851 * 302.88096 * 15 3 2 17 17 C 1.50703 * 109.47002 * 185.63364 * 16 15 3 18 18 O 1.21288 * 119.99948 * 0.02562 * 17 16 15 19 19 N 1.34771 * 119.99643 * 179.97438 * 17 16 15 20 20 C 1.37105 * 119.99905 * 180.02562 * 19 17 16 21 21 H 1.07994 * 119.99744 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99991 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00175 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99806 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47082 * 90.00535 * 24 22 20 26 26 H 1.48508 * 109.47216 * 210.00354 * 24 22 20 27 27 H 1.48501 * 109.47422 * 329.99989 * 24 22 20 28 28 H 1.09004 * 109.46913 * 58.72717 * 1 2 3 29 29 H 1.09001 * 109.47600 * 178.72852 * 1 2 3 30 30 H 1.09000 * 109.47042 * 298.73231 * 1 2 3 31 31 H 1.09007 * 109.46937 * 240.00209 * 2 1 3 32 32 H 1.09003 * 109.47374 * 120.00919 * 2 1 3 33 33 H 1.09003 * 109.47224 * 55.00148 * 5 3 2 34 34 H 1.09004 * 109.47399 * 295.00614 * 5 3 2 35 35 H 0.97000 * 119.99655 * 359.97438 * 6 5 3 36 36 H 1.08000 * 123.35290 * 0.03212 * 10 9 7 37 37 H 1.07998 * 122.44665 * 180.26414 * 11 10 9 38 38 H 1.08999 * 109.47177 * 179.72007 * 13 12 11 39 39 H 1.09007 * 109.47192 * 59.72492 * 13 12 11 40 40 H 1.08995 * 109.47681 * 299.72339 * 13 12 11 41 41 H 1.00902 * 111.00290 * 66.83327 * 15 3 2 42 42 H 1.08994 * 109.47250 * 305.63915 * 16 15 3 43 43 H 1.09001 * 109.47016 * 65.63857 * 16 15 3 44 44 H 0.96999 * 120.00525 * 0.02562 * 19 17 16 45 45 H 0.96999 * 120.00409 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6107 1.9796 0.8457 5 6 3.5656 1.4439 0.1163 6 7 4.0632 2.8166 -0.0035 7 6 5.3864 3.0626 0.0688 8 8 6.1678 2.1442 0.2339 9 6 5.8843 4.4360 -0.0516 10 6 7.1970 4.8111 0.0054 11 6 7.3822 6.1654 -0.1409 12 6 6.2609 6.8775 -0.3031 13 6 6.2172 8.3735 -0.4789 14 16 4.8879 5.8648 -0.2916 15 7 1.6437 2.1020 -1.2513 16 6 2.1484 1.3651 -2.4176 17 6 1.8429 2.1412 -3.6728 18 8 1.2624 3.2038 -3.6026 19 7 2.2157 1.6549 -4.8732 20 6 1.9383 2.3611 -6.0151 21 1 1.4214 3.3073 -5.9526 22 6 2.3231 1.8601 -7.2526 23 7 2.9525 0.7090 -7.3286 24 14 1.9458 2.8227 -8.8084 25 1 3.0733 3.7414 -9.1077 26 1 1.7611 1.8803 -9.9411 27 1 0.7028 3.6116 -8.6132 28 1 -0.3633 0.5335 -0.8784 29 1 -0.3634 -1.0274 -0.0228 30 1 -0.3633 0.4940 0.9011 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 3.9913 0.8324 -0.6794 34 1 3.8567 1.0350 1.0839 35 1 3.4404 3.5484 -0.1355 36 1 8.0085 4.1127 0.1475 37 1 8.3609 6.6216 -0.1236 38 1 5.1824 8.6957 -0.5950 39 1 6.7861 8.6519 -1.3661 40 1 6.6516 8.8552 0.3971 41 1 0.6421 2.2136 -1.2997 42 1 3.2263 1.2330 -2.3254 43 1 1.6656 0.3891 -2.4674 44 1 2.6803 0.8052 -4.9293 45 1 3.2208 0.3590 -8.1925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481785954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:38 Heat of formation + Delta-G solvation = -73.031506 kcal Electronic energy + Delta-G solvation = -26915.225181 eV Core-core repulsion = 23057.901383 eV Total energy + Delta-G solvation = -3857.323798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.99168 -40.22547 -38.95406 -38.39454 -35.95503 -35.21240 -33.30561 -33.00606 -32.76559 -30.17918 -28.51383 -27.61743 -26.05656 -24.79939 -24.01939 -22.20570 -21.74674 -20.83520 -20.09047 -19.77408 -18.87340 -18.33233 -17.32579 -17.08582 -16.74373 -16.50189 -16.31972 -15.94838 -15.79172 -15.69232 -15.20021 -14.88705 -14.86078 -14.65755 -14.36362 -14.05462 -13.98719 -13.59052 -13.52637 -13.31949 -13.17488 -12.97185 -12.87930 -12.73601 -12.72163 -12.41297 -12.30895 -12.12574 -11.88271 -11.81913 -11.67750 -11.49218 -11.22257 -10.34288 -10.20044 -10.00667 -9.60936 -9.54154 -9.35441 -8.46070 -5.94871 -0.50676 0.47319 0.90285 1.37641 1.37966 1.40964 1.53866 2.06342 2.08080 2.19820 2.29092 2.93381 3.21242 3.51257 3.69622 3.80791 3.89128 4.02743 4.15113 4.26875 4.27643 4.34842 4.39080 4.45866 4.51737 4.56745 4.67455 4.72618 4.74192 4.78528 4.91631 5.06215 5.08232 5.11717 5.18811 5.24468 5.35283 5.37972 5.41057 5.42321 5.86795 6.07788 6.39262 6.45137 6.60039 7.08126 7.13078 7.57024 8.11723 8.71542 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007648 B = 0.003627 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3660.355537 B = 7718.864504 C =10150.501192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.155 4.155 3 C 0.083 3.917 4 H 0.114 0.886 5 C 0.125 3.875 6 N -0.704 5.704 7 C 0.583 3.417 8 O -0.578 6.578 9 C -0.306 4.306 10 C -0.055 4.055 11 C -0.168 4.168 12 C -0.190 4.190 13 C -0.087 4.087 14 S 0.219 5.781 15 N -0.667 5.667 16 C 0.062 3.938 17 C 0.441 3.559 18 O -0.615 6.615 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.081 0.919 22 C -0.014 4.014 23 N -0.923 5.923 24 Si 0.992 3.008 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.270 1.270 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.411 0.589 36 H 0.150 0.850 37 H 0.169 0.831 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.354 0.646 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.393 0.607 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.174 6.999 18.618 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.195 4.195 3 C -0.027 4.027 4 H 0.131 0.869 5 C 0.001 3.999 6 N -0.354 5.354 7 C 0.371 3.629 8 O -0.461 6.461 9 C -0.426 4.426 10 C -0.089 4.089 11 C -0.197 4.197 12 C -0.310 4.310 13 C -0.145 4.145 14 S 0.487 5.513 15 N -0.300 5.300 16 C -0.070 4.070 17 C 0.228 3.772 18 O -0.501 6.501 19 N -0.214 5.214 20 C -0.461 4.461 21 H 0.099 0.901 22 C -0.214 4.214 23 N -0.564 5.564 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.194 1.194 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.247 0.753 36 H 0.168 0.832 37 H 0.186 0.814 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.174 0.826 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.226 0.774 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.300 7.643 18.477 20.127 hybrid contribution 0.979 -1.092 -1.085 1.824 sum 3.279 6.552 17.392 18.872 Atomic orbital electron populations 1.21743 0.94673 1.02402 1.01990 1.22162 0.97126 0.96618 1.03579 1.21972 0.93071 0.94813 0.92884 0.86861 1.21562 0.93869 0.82362 1.02112 1.45701 1.06193 1.11043 1.72472 1.17265 0.82627 0.86990 0.76011 1.90768 1.56889 1.45989 1.52469 1.24568 0.99359 0.97384 1.21271 1.20944 0.95097 0.96811 0.96057 1.20128 1.00696 0.92253 1.06666 1.24765 0.97315 1.03151 1.05787 1.20547 1.04086 0.85431 1.04470 1.83219 1.08027 0.94128 1.65950 1.60136 1.19583 1.50441 0.99825 1.21517 1.01479 0.95295 0.88707 1.20818 0.83373 0.87645 0.85350 1.90479 1.47071 1.25280 1.87265 1.41959 1.52303 1.21910 1.05199 1.19676 1.36717 1.04829 0.84873 0.90089 1.26045 0.96216 0.97230 1.01887 1.69681 1.39836 1.19540 1.27355 0.84940 0.78743 0.77839 0.76908 1.19814 1.19633 1.19439 0.94027 0.91831 0.91092 0.92129 0.89258 0.92816 0.89627 0.75277 0.83246 0.81353 0.90674 0.89103 0.88214 0.82551 0.89461 0.91333 0.77356 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.70 71.98 0.70 -1.82 16 2 C -0.16 -2.73 5.10 30.59 0.16 -2.58 16 3 C 0.08 1.68 2.70 44.91 0.12 1.81 16 4 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 5 C 0.12 3.03 4.76 86.38 0.41 3.44 16 6 N -0.70 -19.47 5.38 -467.16 -2.52 -21.99 16 7 C 0.58 18.74 7.78 86.42 0.67 19.41 16 8 O -0.58 -21.99 16.84 -4.37 -0.07 -22.07 16 9 C -0.31 -8.64 6.45 24.08 0.16 -8.48 16 10 C -0.05 -1.38 10.01 21.72 0.22 -1.17 16 11 C -0.17 -3.34 9.99 21.08 0.21 -3.13 16 12 C -0.19 -3.67 6.28 24.68 0.15 -3.52 16 13 C -0.09 -1.08 10.33 71.23 0.74 -0.34 16 14 S 0.22 5.06 22.08 -56.49 -1.25 3.81 16 15 N -0.67 -18.71 5.32 -495.58 -2.64 -21.35 16 16 C 0.06 2.12 5.31 85.56 0.45 2.58 16 17 C 0.44 20.81 7.83 87.66 0.69 21.50 16 18 O -0.61 -33.04 15.90 -3.05 -0.05 -33.09 16 19 N -0.58 -29.98 5.29 -307.00 -1.62 -31.61 16 20 C -0.33 -18.95 9.68 84.04 0.81 -18.14 16 21 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 22 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 23 N -0.92 -50.82 13.05 21.66 0.28 -50.54 16 24 Si 0.99 43.31 29.55 68.60 2.03 45.34 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 28 H 0.04 0.83 6.87 -2.38 -0.02 0.82 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.23 6.23 -2.38 -0.01 1.21 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.51 6.61 -2.39 -0.02 1.49 16 34 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.41 10.90 7.25 -92.71 -0.67 10.23 16 36 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 37 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.07 0.88 8.11 -2.39 -0.02 0.86 16 39 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.35 10.03 7.29 -89.69 -0.65 9.37 16 42 H 0.09 3.00 6.22 -2.39 -0.01 2.98 16 43 H 0.07 2.08 6.48 -2.39 -0.02 2.07 16 44 H 0.39 19.82 7.90 -92.71 -0.73 19.08 16 45 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -72.59 387.71 -0.89 -73.47 By element: Atomic # 1 Polarization: 49.76 SS G_CDS: -1.01 Total: 48.75 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 5.96 Total: 9.26 kcal Atomic # 7 Polarization: -118.99 SS G_CDS: -6.49 Total: -125.48 kcal Atomic # 8 Polarization: -55.03 SS G_CDS: -0.12 Total: -55.15 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 5.06 SS G_CDS: -1.25 Total: 3.81 kcal Total: -72.59 -0.89 -73.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481785954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.442 kcal (2) G-P(sol) polarization free energy of solvation -72.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds