Wall clock time and date at job start Wed Apr 1 2020 01:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47589 * 2 1 4 4 H 1.09007 * 109.47066 * 304.25900 * 3 2 1 5 5 C 1.53001 * 109.47538 * 184.25924 * 3 2 1 6 6 N 1.46495 * 109.47155 * 185.00270 * 5 3 2 7 7 C 1.34775 * 120.00077 * 180.02562 * 6 5 3 8 8 O 1.21637 * 119.99787 * 359.97438 * 7 6 5 9 9 C 1.47193 * 120.00051 * 179.97438 * 7 6 5 10 10 C 1.44425 * 123.46184 * 359.69864 * 9 7 6 11 11 C 1.32765 * 113.08152 * 179.81197 * 10 9 7 12 12 S 1.75503 * 110.57718 * 0.43956 * 11 10 9 13 13 C 1.36013 * 123.45913 * 179.97438 * 9 7 6 14 14 C 1.50704 * 124.59147 * 359.94159 * 13 9 7 15 15 N 1.46897 * 109.47187 * 64.25679 * 3 2 1 16 16 C 1.46906 * 111.00071 * 65.54788 * 15 3 2 17 17 C 1.50696 * 109.47168 * 183.46222 * 16 15 3 18 18 O 1.21287 * 120.00389 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99896 * 179.72474 * 17 16 15 20 20 C 1.37094 * 120.00076 * 179.97438 * 19 17 16 21 21 H 1.07996 * 120.00082 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99947 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00057 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00108 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47045 * 89.99551 * 24 22 20 26 26 H 1.48502 * 109.47232 * 209.99530 * 24 22 20 27 27 H 1.48502 * 109.46873 * 329.99302 * 24 22 20 28 28 H 1.08998 * 109.46846 * 54.73714 * 1 2 3 29 29 H 1.09001 * 109.46804 * 174.73220 * 1 2 3 30 30 H 1.08995 * 109.46997 * 294.73660 * 1 2 3 31 31 H 1.09008 * 109.46950 * 239.99694 * 2 1 3 32 32 H 1.09003 * 109.47116 * 120.00532 * 2 1 3 33 33 H 1.09003 * 109.46834 * 305.00253 * 5 3 2 34 34 H 1.08997 * 109.47231 * 64.99934 * 5 3 2 35 35 H 0.97005 * 120.00540 * 359.97438 * 6 5 3 36 36 H 1.07999 * 123.45717 * 0.02562 * 10 9 7 37 37 H 1.08000 * 124.71535 * 180.18793 * 11 10 9 38 38 H 1.09001 * 109.47144 * 89.99459 * 14 13 9 39 39 H 1.09001 * 109.47137 * 209.99738 * 14 13 9 40 40 H 1.09003 * 109.47110 * 330.00154 * 14 13 9 41 41 H 1.00895 * 111.00401 * 189.50535 * 15 3 2 42 42 H 1.08995 * 109.46837 * 63.46295 * 16 15 3 43 43 H 1.08999 * 109.46857 * 303.46158 * 16 15 3 44 44 H 0.96996 * 119.99860 * 0.02562 * 19 17 16 45 45 H 0.97009 * 119.99967 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6158 1.9778 -0.8494 5 6 3.5664 1.4437 -0.1071 6 7 4.0632 2.8166 0.0129 7 6 5.3866 3.0626 -0.0530 8 8 6.1687 2.1445 -0.2115 9 6 5.8857 4.4421 0.0670 10 6 5.0250 5.5872 0.2503 11 6 5.6925 6.7315 0.3373 12 16 7.4184 6.4520 0.1844 13 6 7.2046 4.7699 0.0113 14 6 8.3251 3.7799 -0.1774 15 7 1.6363 2.1046 1.2475 16 6 2.2958 1.4898 2.4073 17 6 1.7939 2.1372 3.6722 18 8 0.9677 3.0233 3.6134 19 7 2.2586 1.7275 4.8691 20 6 1.8024 2.3168 6.0198 21 1 1.0704 3.1091 5.9672 22 6 2.2819 1.8948 7.2538 23 7 3.1723 0.9304 7.3178 24 14 1.6598 2.6973 8.8218 25 1 0.4660 1.9636 9.3133 26 1 2.7257 2.6571 9.8550 27 1 1.2934 4.1092 8.5434 28 1 -0.3633 0.5933 -0.8391 29 1 -0.3633 -1.0234 -0.0944 30 1 -0.3633 0.4300 0.9333 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.9872 0.8338 0.6923 34 1 3.8632 1.0329 -1.0721 35 1 3.4395 3.5489 0.1389 36 1 3.9490 5.5192 0.3138 37 1 5.2366 7.7004 0.4781 38 1 8.5239 3.6546 -1.2417 39 1 9.2228 4.1483 0.3191 40 1 8.0389 2.8207 0.2541 41 1 1.8236 3.0952 1.2081 42 1 3.3737 1.6315 2.3296 43 1 2.0702 0.4237 2.4306 44 1 2.9164 1.0162 4.9164 45 1 3.5068 0.6355 8.1794 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481809949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:02 Heat of formation + Delta-G solvation = -47.010878 kcal Electronic energy + Delta-G solvation = -27229.865158 eV Core-core repulsion = 23373.669699 eV Total energy + Delta-G solvation = -3856.195459 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.22847 -38.70388 -37.48120 -36.81219 -34.18497 -33.88011 -32.05956 -31.95649 -31.17656 -29.05386 -27.26805 -26.35322 -24.41384 -23.98873 -22.78374 -21.61242 -20.37304 -19.46102 -19.03383 -17.90356 -17.46585 -17.03667 -16.70514 -15.87974 -15.52781 -15.31002 -14.77896 -14.56525 -14.28280 -14.16715 -13.83267 -13.73535 -13.61319 -13.51402 -13.43403 -13.08807 -12.81439 -12.66293 -12.26649 -12.16465 -11.92148 -11.77966 -11.63900 -11.45261 -11.27435 -11.26096 -11.03041 -10.85877 -10.57339 -10.39238 -10.20893 -9.83860 -9.49851 -9.24353 -8.96616 -8.63770 -8.49781 -8.08503 -7.95043 -6.40548 -3.81485 0.61888 1.28483 1.68958 1.80890 3.12041 3.18217 3.26747 3.27810 3.32289 3.91738 4.09476 4.32254 4.46681 4.62413 4.68668 4.86186 4.94978 5.10925 5.13386 5.20519 5.27142 5.36113 5.36889 5.44646 5.52180 5.57405 5.74016 5.77490 5.78058 5.80959 5.91428 5.99765 6.05050 6.07334 6.08877 6.23124 6.31591 6.33897 6.54518 7.13485 7.36037 7.54106 7.55842 8.06933 8.13137 8.62140 9.18798 9.55560 10.06809 10.77129 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008038 B = 0.003442 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3482.423461 B = 8132.006031 C =10398.933056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.076 3.924 4 H 0.089 0.911 5 C 0.081 3.919 6 N -0.723 5.723 7 C 0.583 3.417 8 O -0.537 6.537 9 C -0.178 4.178 10 C -0.104 4.104 11 C -0.233 4.233 12 S 0.175 5.825 13 C -0.138 4.138 14 C -0.095 4.095 15 N -0.652 5.652 16 C 0.043 3.957 17 C 0.442 3.558 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.398 0.602 36 H 0.149 0.851 37 H 0.170 0.830 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.343 0.657 42 H 0.047 0.953 43 H 0.089 0.911 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.018 5.482 -18.253 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.035 4.035 4 H 0.107 0.893 5 C -0.044 4.044 6 N -0.375 5.375 7 C 0.369 3.631 8 O -0.416 6.416 9 C -0.194 4.194 10 C -0.133 4.133 11 C -0.368 4.368 12 S 0.440 5.560 13 C -0.258 4.258 14 C -0.154 4.154 15 N -0.283 5.283 16 C -0.089 4.089 17 C 0.227 3.773 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.233 0.767 36 H 0.166 0.834 37 H 0.187 0.813 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.163 0.837 42 H 0.065 0.935 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.751 5.927 -18.130 20.589 hybrid contribution -0.562 -0.292 0.918 1.115 sum 7.189 5.635 -17.213 19.486 Atomic orbital electron populations 1.21620 0.94619 1.00597 1.03057 1.21504 0.97335 0.94274 1.02021 1.21993 0.90505 0.97330 0.93650 0.89335 1.22212 0.96490 0.82971 1.02761 1.45807 1.07186 1.09923 1.74572 1.17518 0.82023 0.87452 0.76063 1.90725 1.55412 1.45714 1.49779 1.20119 0.92580 0.94150 1.12573 1.21231 1.00556 0.90626 1.00841 1.25397 0.96780 1.02917 1.11658 1.83047 1.05717 0.98238 1.69004 1.24545 0.98335 1.00362 1.02555 1.20647 0.93333 0.98418 1.02965 1.60203 1.60686 1.07336 1.00113 1.21777 0.96408 1.00062 0.90657 1.19789 0.86179 0.86901 0.84418 1.90514 1.35869 1.33663 1.86762 1.41861 1.38944 1.34522 1.04655 1.19686 1.22688 1.17627 0.82902 0.87960 1.25255 0.96499 0.96681 0.99455 1.69618 1.29886 1.28141 1.26577 0.85874 0.78192 0.79593 0.80723 1.20384 1.20946 1.19444 0.93224 0.93519 0.91026 0.91800 0.91402 0.90732 0.91067 0.76651 0.83392 0.81287 0.90297 0.91511 0.87676 0.83707 0.93518 0.89290 0.77529 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.73 37.16 0.36 -1.24 16 2 C -0.11 -1.21 5.31 -26.73 -0.14 -1.36 16 3 C 0.08 0.84 2.71 -67.72 -0.18 0.66 16 4 H 0.09 0.87 8.14 -51.92 -0.42 0.44 16 5 C 0.08 0.94 4.47 -4.04 -0.02 0.93 16 6 N -0.72 -8.59 5.29 -61.46 -0.32 -8.92 16 7 C 0.58 8.15 7.79 -12.62 -0.10 8.05 16 8 O -0.54 -8.82 14.06 5.24 0.07 -8.75 16 9 C -0.18 -2.23 5.98 -104.63 -0.63 -2.86 16 10 C -0.10 -1.10 9.91 -39.02 -0.39 -1.48 16 11 C -0.23 -2.17 11.12 28.86 0.32 -1.85 16 12 S 0.17 1.60 22.97 -107.50 -2.47 -0.87 16 13 C -0.14 -1.60 6.34 -35.11 -0.22 -1.82 16 14 C -0.10 -1.02 9.60 36.01 0.35 -0.68 16 15 N -0.65 -9.47 5.41 -107.99 -0.58 -10.05 16 16 C 0.04 0.74 5.30 -4.97 -0.03 0.72 16 17 C 0.44 10.28 7.83 -10.99 -0.09 10.20 16 18 O -0.58 -15.47 15.85 5.55 0.09 -15.38 16 19 N -0.56 -14.33 5.29 -10.97 -0.06 -14.39 16 20 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16 24 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 31 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.07 0.79 6.28 -51.93 -0.33 0.47 16 33 H 0.07 1.00 6.71 -51.93 -0.35 0.65 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.40 4.13 5.78 -40.82 -0.24 3.90 16 36 H 0.15 1.31 7.10 -52.49 -0.37 0.93 16 37 H 0.17 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 1.37 5.94 -51.93 -0.31 1.06 16 41 H 0.34 4.99 7.29 -39.29 -0.29 4.70 16 42 H 0.05 0.78 6.49 -51.93 -0.34 0.45 16 43 H 0.09 1.45 6.22 -51.93 -0.32 1.12 16 44 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 45 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 382.16 15.07 5.76 5.76 Total: -1.00 -32.82 382.16 -8.98 -41.80 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -6.16 Total: 17.42 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.00 Total: 1.27 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.24 Total: -57.39 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: 0.16 Total: -24.13 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.47 Total: -0.87 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.82 -8.98 -41.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481809949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.209 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds