Wall clock time and date at job start Wed Apr 1 2020 01:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47589 * 2 1 4 4 H 1.09007 * 109.47066 * 304.25900 * 3 2 1 5 5 C 1.53001 * 109.47538 * 184.25924 * 3 2 1 6 6 N 1.46495 * 109.47155 * 185.00270 * 5 3 2 7 7 C 1.34775 * 120.00077 * 180.02562 * 6 5 3 8 8 O 1.21637 * 119.99787 * 359.97438 * 7 6 5 9 9 C 1.47193 * 120.00051 * 179.97438 * 7 6 5 10 10 C 1.44425 * 123.46184 * 359.69864 * 9 7 6 11 11 C 1.32765 * 113.08152 * 179.81197 * 10 9 7 12 12 S 1.75503 * 110.57718 * 0.43956 * 11 10 9 13 13 C 1.36013 * 123.45913 * 179.97438 * 9 7 6 14 14 C 1.50704 * 124.59147 * 359.94159 * 13 9 7 15 15 N 1.46897 * 109.47187 * 64.25679 * 3 2 1 16 16 C 1.46906 * 111.00071 * 65.54788 * 15 3 2 17 17 C 1.50696 * 109.47168 * 183.46222 * 16 15 3 18 18 O 1.21287 * 120.00389 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99896 * 179.72474 * 17 16 15 20 20 C 1.37094 * 120.00076 * 179.97438 * 19 17 16 21 21 H 1.07996 * 120.00082 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99947 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00057 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00108 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47045 * 89.99551 * 24 22 20 26 26 H 1.48502 * 109.47232 * 209.99530 * 24 22 20 27 27 H 1.48502 * 109.46873 * 329.99302 * 24 22 20 28 28 H 1.08998 * 109.46846 * 54.73714 * 1 2 3 29 29 H 1.09001 * 109.46804 * 174.73220 * 1 2 3 30 30 H 1.08995 * 109.46997 * 294.73660 * 1 2 3 31 31 H 1.09008 * 109.46950 * 239.99694 * 2 1 3 32 32 H 1.09003 * 109.47116 * 120.00532 * 2 1 3 33 33 H 1.09003 * 109.46834 * 305.00253 * 5 3 2 34 34 H 1.08997 * 109.47231 * 64.99934 * 5 3 2 35 35 H 0.97005 * 120.00540 * 359.97438 * 6 5 3 36 36 H 1.07999 * 123.45717 * 0.02562 * 10 9 7 37 37 H 1.08000 * 124.71535 * 180.18793 * 11 10 9 38 38 H 1.09001 * 109.47144 * 89.99459 * 14 13 9 39 39 H 1.09001 * 109.47137 * 209.99738 * 14 13 9 40 40 H 1.09003 * 109.47110 * 330.00154 * 14 13 9 41 41 H 1.00895 * 111.00401 * 189.50535 * 15 3 2 42 42 H 1.08995 * 109.46837 * 63.46295 * 16 15 3 43 43 H 1.08999 * 109.46857 * 303.46158 * 16 15 3 44 44 H 0.96996 * 119.99860 * 0.02562 * 19 17 16 45 45 H 0.97009 * 119.99967 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6158 1.9778 -0.8494 5 6 3.5664 1.4437 -0.1071 6 7 4.0632 2.8166 0.0129 7 6 5.3866 3.0626 -0.0530 8 8 6.1687 2.1445 -0.2115 9 6 5.8857 4.4421 0.0670 10 6 5.0250 5.5872 0.2503 11 6 5.6925 6.7315 0.3373 12 16 7.4184 6.4520 0.1844 13 6 7.2046 4.7699 0.0113 14 6 8.3251 3.7799 -0.1774 15 7 1.6363 2.1046 1.2475 16 6 2.2958 1.4898 2.4073 17 6 1.7939 2.1372 3.6722 18 8 0.9677 3.0233 3.6134 19 7 2.2586 1.7275 4.8691 20 6 1.8024 2.3168 6.0198 21 1 1.0704 3.1091 5.9672 22 6 2.2819 1.8948 7.2538 23 7 3.1723 0.9304 7.3178 24 14 1.6598 2.6973 8.8218 25 1 0.4660 1.9636 9.3133 26 1 2.7257 2.6571 9.8550 27 1 1.2934 4.1092 8.5434 28 1 -0.3633 0.5933 -0.8391 29 1 -0.3633 -1.0234 -0.0944 30 1 -0.3633 0.4300 0.9333 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.9872 0.8338 0.6923 34 1 3.8632 1.0329 -1.0721 35 1 3.4395 3.5489 0.1389 36 1 3.9490 5.5192 0.3138 37 1 5.2366 7.7004 0.4781 38 1 8.5239 3.6546 -1.2417 39 1 9.2228 4.1483 0.3191 40 1 8.0389 2.8207 0.2541 41 1 1.8236 3.0952 1.2081 42 1 3.3737 1.6315 2.3296 43 1 2.0702 0.4237 2.4306 44 1 2.9164 1.0162 4.9164 45 1 3.5068 0.6355 8.1794 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481809949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:01 Heat of formation + Delta-G solvation = -70.720917 kcal Electronic energy + Delta-G solvation = -27230.893302 eV Core-core repulsion = 23373.669699 eV Total energy + Delta-G solvation = -3857.223604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.25804 -40.25150 -38.81514 -37.78422 -35.96766 -35.14153 -33.35232 -33.00905 -32.85410 -30.10717 -28.48384 -27.58112 -26.08746 -25.02249 -23.63804 -22.53223 -21.70471 -20.71203 -20.27783 -19.85114 -18.39466 -18.26223 -17.77329 -17.07467 -16.82648 -16.63067 -16.27845 -15.93709 -15.65792 -15.51112 -15.13760 -14.83767 -14.66474 -14.55387 -14.28949 -14.25169 -13.93405 -13.77625 -13.63616 -13.47519 -13.13412 -13.05953 -12.88412 -12.66945 -12.58955 -12.41664 -12.26461 -12.12772 -12.03005 -11.78412 -11.54201 -11.48776 -10.87193 -10.35127 -10.24995 -10.01611 -9.76431 -9.41249 -9.37538 -8.46625 -5.95623 -0.23434 0.51856 0.91863 0.95882 1.37508 1.40915 1.53812 2.04844 2.15705 2.28775 2.29550 2.92656 3.20518 3.50997 3.67053 3.70475 3.80188 4.02094 4.13847 4.19800 4.30185 4.35022 4.39261 4.45574 4.56861 4.59191 4.62396 4.67846 4.68706 4.92523 4.94866 4.98276 5.03148 5.17825 5.20802 5.25844 5.36376 5.39603 5.40438 5.58423 5.86399 6.06983 6.35936 6.41257 6.59020 7.12191 7.12269 7.55804 8.10441 8.70895 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008038 B = 0.003442 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3482.423461 B = 8132.006031 C =10398.933056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 C 0.086 3.914 4 H 0.112 0.888 5 C 0.086 3.914 6 N -0.715 5.715 7 C 0.575 3.425 8 O -0.571 6.571 9 C -0.202 4.202 10 C -0.118 4.118 11 C -0.233 4.233 12 S 0.222 5.778 13 C -0.160 4.160 14 C -0.093 4.093 15 N -0.658 5.658 16 C 0.064 3.936 17 C 0.440 3.560 18 O -0.617 6.617 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.081 0.919 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.272 1.272 27 H -0.271 1.271 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.039 0.961 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.406 0.594 36 H 0.161 0.839 37 H 0.195 0.805 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.344 0.656 42 H 0.053 0.947 43 H 0.102 0.898 44 H 0.393 0.607 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.102 6.398 -19.009 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C -0.024 4.024 4 H 0.130 0.870 5 C -0.039 4.039 6 N -0.367 5.367 7 C 0.363 3.637 8 O -0.452 6.452 9 C -0.219 4.219 10 C -0.147 4.147 11 C -0.368 4.368 12 S 0.488 5.512 13 C -0.281 4.281 14 C -0.151 4.151 15 N -0.290 5.290 16 C -0.068 4.068 17 C 0.228 3.772 18 O -0.503 6.503 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.099 0.901 22 C -0.213 4.213 23 N -0.564 5.564 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.197 1.197 27 H -0.195 1.195 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.243 0.757 36 H 0.178 0.822 37 H 0.212 0.788 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.163 0.837 42 H 0.071 0.929 43 H 0.119 0.881 44 H 0.226 0.774 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.825 6.840 -18.906 21.574 hybrid contribution -0.575 -0.538 1.076 1.333 sum 7.250 6.302 -17.830 20.253 Atomic orbital electron populations 1.21570 0.94911 1.01224 1.01811 1.21538 0.96950 0.93908 1.02728 1.22058 0.90134 0.97714 0.92463 0.87004 1.22172 0.96508 0.82665 1.02598 1.45770 1.06843 1.10318 1.73801 1.17867 0.82307 0.87928 0.75610 1.90704 1.56228 1.46778 1.51513 1.20238 0.93464 0.93998 1.14226 1.21363 1.01208 0.90382 1.01721 1.25803 0.97114 1.03660 1.10231 1.82847 1.05254 0.95659 1.67457 1.24853 0.98338 1.02302 1.02597 1.20599 0.93883 0.97214 1.03433 1.60195 1.60703 1.07526 1.00555 1.21521 0.96481 1.00117 0.88705 1.20805 0.84883 0.85973 0.85547 1.90481 1.37198 1.35094 1.87526 1.41953 1.39424 1.34859 1.04995 1.19676 1.23591 1.18331 0.84582 0.90102 1.26052 0.96324 0.96954 1.01992 1.69689 1.30314 1.28742 1.27608 0.84934 0.78046 0.78490 0.76924 1.19611 1.19696 1.19535 0.92019 0.92498 0.94160 0.89256 0.92565 0.92534 0.90073 0.75739 0.82197 0.78764 0.89595 0.89671 0.90337 0.83685 0.92914 0.88052 0.77358 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.73 71.98 0.70 -2.19 16 2 C -0.11 -2.21 5.31 30.59 0.16 -2.04 16 3 C 0.09 1.76 2.71 44.91 0.12 1.88 16 4 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 5 C 0.09 1.91 4.47 86.38 0.39 2.30 16 6 N -0.72 -16.63 5.29 -466.60 -2.47 -19.09 16 7 C 0.58 16.22 7.79 86.60 0.67 16.90 16 8 O -0.57 -19.24 14.06 -4.15 -0.06 -19.30 16 9 C -0.20 -5.03 5.98 -19.87 -0.12 -5.15 16 10 C -0.12 -2.37 9.91 22.67 0.22 -2.15 16 11 C -0.23 -3.88 11.12 66.64 0.74 -3.13 16 12 S 0.22 3.65 22.97 -56.49 -1.30 2.36 16 13 C -0.16 -3.64 6.34 25.17 0.16 -3.48 16 14 C -0.09 -2.00 9.60 71.24 0.68 -1.31 16 15 N -0.66 -18.59 5.41 -495.58 -2.68 -21.27 16 16 C 0.06 2.20 5.30 85.55 0.45 2.65 16 17 C 0.44 20.87 7.83 87.66 0.69 21.56 16 18 O -0.62 -33.33 15.85 -3.05 -0.05 -33.38 16 19 N -0.58 -29.97 5.29 -307.00 -1.62 -31.59 16 20 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 21 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 23 N -0.92 -50.76 13.05 21.66 0.28 -50.47 16 24 Si 0.99 43.26 29.55 68.60 2.03 45.29 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.04 1.10 7.88 -2.39 -0.02 1.08 16 31 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.06 1.24 6.28 -2.39 -0.01 1.23 16 33 H 0.06 1.49 6.71 -2.39 -0.02 1.47 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.41 8.08 5.78 -92.70 -0.54 7.54 16 36 H 0.16 2.64 7.10 -2.91 -0.02 2.62 16 37 H 0.20 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.08 2.14 5.94 -2.39 -0.01 2.12 16 41 H 0.34 9.72 7.29 -89.70 -0.65 9.07 16 42 H 0.05 1.77 6.49 -2.39 -0.02 1.76 16 43 H 0.10 3.26 6.22 -2.39 -0.01 3.25 16 44 H 0.39 19.88 7.90 -92.71 -0.73 19.15 16 45 H 0.28 14.27 8.31 -92.70 -0.77 13.50 16 Total: -1.00 -72.08 382.16 -0.58 -72.66 By element: Atomic # 1 Polarization: 48.32 SS G_CDS: -0.87 Total: 47.45 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 6.16 Total: 7.36 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -6.49 Total: -122.43 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -0.11 Total: -52.68 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.30 Total: 2.36 kcal Total: -72.08 -0.58 -72.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481809949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.939 kcal (2) G-P(sol) polarization free energy of solvation -72.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds