Wall clock time and date at job start Wed Apr 1 2020 01:40:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17393 * 1
3 3 C 1.47205 * 179.97438 * 2 1
4 4 N 1.46493 * 109.46884 * 159.61414 * 3 2 1
5 5 C 1.34781 * 119.99903 * 179.97438 * 4 3 2
6 6 O 1.21279 * 120.00124 * 0.02562 * 5 4 3
7 7 C 1.50698 * 119.99887 * 179.97438 * 5 4 3
8 8 N 1.46907 * 109.46829 * 180.02562 * 7 5 4
9 9 C 1.46904 * 110.99692 * 180.02562 * 8 7 5
10 10 C 1.52998 * 109.46592 * 179.97438 * 9 8 7
11 11 H 1.09006 * 110.00099 * 64.64601 * 10 9 8
12 12 C 1.54317 * 109.77089 * 185.79558 * 10 9 8
13 13 C 1.55155 * 102.86329 * 141.88605 * 12 10 9
14 14 C 1.54905 * 101.58269 * 324.30621 * 13 12 10
15 15 N 1.47014 * 109.88728 * 303.54656 * 10 9 8
16 16 C 1.34777 * 125.64925 * 61.67606 * 15 10 9
17 17 O 1.21278 * 119.99854 * 359.72596 * 16 15 10
18 18 C 1.50703 * 120.00161 * 179.71903 * 16 15 10
19 19 S 1.81002 * 109.47178 * 180.02562 * 18 16 15
20 20 C 1.76198 * 100.00092 * 180.02562 * 19 18 16
21 21 H 1.08004 * 120.00019 * 0.02562 * 20 19 18
22 22 C 1.38795 * 119.99810 * 179.97438 * 20 19 18
23 23 N 1.31626 * 120.00234 * 359.97438 * 22 20 19
24 24 Si 1.86801 * 119.99664 * 180.02562 * 22 20 19
25 25 H 1.48501 * 109.47231 * 60.00264 * 24 22 20
26 26 H 1.48505 * 109.47271 * 180.02562 * 24 22 20
27 27 H 1.48503 * 109.47260 * 299.99689 * 24 22 20
28 28 H 4.40641 * 5.51413 * 180.02562 * 4 1 2
29 29 H 1.09002 * 109.46727 * 39.61540 * 3 2 1
30 30 H 1.08999 * 109.46945 * 279.61586 * 3 2 1
31 31 H 0.97003 * 120.00517 * 0.02562 * 4 3 2
32 32 H 1.08992 * 109.47233 * 60.00729 * 7 5 4
33 33 H 1.09002 * 109.47357 * 299.99602 * 7 5 4
34 34 H 1.00903 * 111.00001 * 56.04669 * 8 7 5
35 35 H 1.08998 * 109.47269 * 60.00249 * 9 8 7
36 36 H 1.08993 * 109.47131 * 299.99501 * 9 8 7
37 37 H 1.09000 * 110.92706 * 23.47471 * 12 10 9
38 38 H 1.09001 * 110.74719 * 260.21581 * 12 10 9
39 39 H 1.08999 * 111.00772 * 206.22692 * 13 12 10
40 40 H 1.09008 * 111.03850 * 82.39448 * 13 12 10
41 41 H 1.09004 * 110.36707 * 278.16698 * 14 13 12
42 42 H 1.09003 * 110.46645 * 155.89221 * 14 13 12
43 43 H 1.09002 * 109.47152 * 60.00245 * 18 16 15
44 44 H 1.09001 * 109.46980 * 300.00345 * 18 16 15
45 45 H 0.97005 * 119.99806 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1739 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1337 1.2955 -0.4811
5 6 4.4587 1.5272 -0.5664
6 8 5.2472 0.6635 -0.2453
7 6 4.9603 2.8590 -1.0619
8 7 6.4294 2.8597 -1.0618
9 6 6.9552 4.1456 -1.5395
10 6 8.4847 4.1082 -1.5245
11 1 8.8465 3.3655 -2.2357
12 6 9.0444 5.5003 -1.8852
13 6 10.2756 5.6305 -0.9502
14 6 9.7757 4.9068 0.3249
15 7 8.9637 3.7817 -0.1735
16 6 8.7078 2.6404 0.4962
17 8 8.0243 1.7782 -0.0140
18 6 9.2711 2.4356 1.8789
19 16 8.7547 0.8186 2.5073
20 6 9.5297 0.8435 4.0895
21 1 10.1104 1.7021 4.3929
22 6 9.3931 -0.2399 4.9462
23 7 8.6842 -1.2857 4.5770
24 14 10.2142 -0.2132 6.6239
25 1 9.6951 0.9342 7.4109
26 1 9.9179 -1.4798 7.3403
27 1 11.6828 -0.0731 6.4541
28 1 -1.0503 -0.0003 0.0003
29 1 3.0096 -0.7909 -0.6553
30 1 3.0094 -0.1708 1.0132
31 1 2.5030 1.9865 -0.7376
32 1 4.5963 3.6508 -0.4073
33 1 4.5974 3.0299 -2.0754
34 1 6.7914 2.0943 -1.6106
35 1 6.6053 4.9460 -0.8876
36 1 6.6058 4.3259 -2.5560
37 1 8.3140 6.2808 -1.6720
38 1 9.3492 5.5348 -2.9312
39 1 10.5001 6.6768 -0.7430
40 1 11.1432 5.1233 -1.3725
41 1 9.1640 5.5785 0.9273
42 1 10.6187 4.5368 0.9085
43 1 8.9014 3.2182 2.5414
44 1 10.3595 2.4784 1.8378
45 1 8.5890 -2.0430 5.1757
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001483921534.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 01:40:18
Heat of formation + Delta-G solvation = 17.840795 kcal
Electronic energy + Delta-G solvation = -27115.519507 eV
Core-core repulsion = 23262.136228 eV
Total energy + Delta-G solvation = -3853.383280 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-39.86477 -39.32262 -36.82439 -35.71693 -34.94948 -32.62317 -32.28197 -31.55592
-30.49497 -28.43153 -27.91155 -25.80572 -25.32816 -23.69712 -22.08715 -21.15541
-20.35240 -18.91683 -18.58811 -17.53038 -16.91917 -16.68610 -16.16090 -15.85402
-15.73276 -14.92826 -14.68183 -14.55415 -14.31478 -13.99236 -13.83471 -13.70965
-13.45316 -13.40387 -13.07292 -12.97668 -12.64200 -12.39150 -12.18670 -11.82848
-11.58811 -11.33841 -11.30560 -11.08756 -10.96413 -10.94277 -10.87566 -10.85022
-10.64253 -10.59472 -9.64567 -9.47567 -8.96615 -8.91746 -8.79773 -8.33896
-7.96431 -7.71492 -6.27111 -6.06092 -3.73258 2.27616 2.58994 2.95778
3.17793 3.31772 3.35198 3.38560 3.45485 3.59406 3.86590 4.11331
4.30571 4.35748 4.47995 4.71066 4.78930 4.93680 5.09199 5.17898
5.27681 5.32148 5.35176 5.38086 5.43758 5.49259 5.53389 5.58091
5.59706 5.61898 5.71808 5.73631 5.77152 5.88518 5.99728 6.14248
6.20452 6.38160 6.42659 6.74584 7.11051 7.31428 7.58621 7.72938
7.76217 8.09978 8.49389 8.51152 9.11972 9.38372 11.00774
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.006330 B = 0.004331 C = 0.002658
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4422.653944 B = 6463.550130 C =10532.957227
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.197 4.197
3 C 0.229 3.771
4 N -0.741 5.741
5 C 0.501 3.499
6 O -0.479 6.479
7 C 0.044 3.956
8 N -0.639 5.639
9 C 0.052 3.948
10 C 0.142 3.858
11 H 0.069 0.931
12 C -0.125 4.125
13 C -0.132 4.132
14 C 0.102 3.898
15 N -0.621 5.621
16 C 0.540 3.460
17 O -0.455 6.455
18 C -0.143 4.143
19 S -0.047 6.047
20 C -0.537 4.537
21 H 0.068 0.932
22 C 0.074 3.926
23 N -0.867 5.867
24 Si 0.914 3.086
25 H -0.275 1.275
26 H -0.284 1.284
27 H -0.275 1.275
28 H 0.220 0.780
29 H 0.091 0.909
30 H 0.096 0.904
31 H 0.397 0.603
32 H 0.092 0.908
33 H 0.045 0.955
34 H 0.363 0.637
35 H 0.069 0.931
36 H 0.028 0.972
37 H 0.075 0.925
38 H 0.077 0.923
39 H 0.079 0.921
40 H 0.075 0.925
41 H 0.061 0.939
42 H 0.074 0.926
43 H 0.079 0.921
44 H 0.079 0.921
45 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.573 15.171 -15.637 23.413
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.198 4.198
3 C 0.106 3.894
4 N -0.397 5.397
5 C 0.286 3.714
6 O -0.348 6.348
7 C -0.089 4.089
8 N -0.276 5.276
9 C -0.079 4.079
10 C 0.038 3.962
11 H 0.087 0.913
12 C -0.163 4.163
13 C -0.170 4.170
14 C -0.022 4.022
15 N -0.360 5.360
16 C 0.327 3.673
17 O -0.323 6.323
18 C -0.294 4.294
19 S 0.180 5.820
20 C -0.685 4.685
21 H 0.087 0.913
22 C -0.135 4.135
23 N -0.503 5.503
24 Si 0.741 3.259
25 H -0.201 1.201
26 H -0.209 1.209
27 H -0.201 1.201
28 H 0.237 0.763
29 H 0.109 0.891
30 H 0.114 0.886
31 H 0.230 0.770
32 H 0.110 0.890
33 H 0.063 0.937
34 H 0.187 0.813
35 H 0.088 0.912
36 H 0.046 0.954
37 H 0.094 0.906
38 H 0.096 0.904
39 H 0.098 0.902
40 H 0.093 0.907
41 H 0.080 0.920
42 H 0.093 0.907
43 H 0.097 0.903
44 H 0.097 0.903
45 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -8.981 13.051 -15.390 22.087
hybrid contribution 0.487 1.482 0.783 1.746
sum -8.494 14.533 -14.607 22.287
Atomic orbital electron populations
1.24960 0.95887 0.98389 1.01172 1.23091 0.94373 1.01896 1.00418
1.18072 0.82626 0.86808 1.01889 1.45975 1.07449 1.16222 1.70050
1.20658 0.81502 0.90245 0.79022 1.90931 1.54078 1.45337 1.44488
1.21749 0.92122 0.95378 0.99606 1.60706 1.02745 1.03955 1.60231
1.22449 0.94783 0.93296 0.97361 1.21435 0.92841 0.96036 0.85916
0.91311 1.22628 0.97766 0.95919 1.00036 1.22762 0.97793 1.00860
0.95627 1.22196 0.94991 0.88789 0.96215 1.48459 1.53704 1.17566
1.16313 1.19755 0.80427 0.80555 0.86581 1.90711 1.33639 1.40330
1.67659 1.23475 1.03011 1.07077 0.95850 1.85553 1.68032 1.11808
1.16650 1.22895 1.37188 1.06060 1.02379 0.91344 1.24949 0.95329
0.94686 0.98562 1.70028 1.37781 1.05912 1.36552 0.86303 0.79619
0.77474 0.82539 1.20072 1.20910 1.20060 0.76301 0.89138 0.88640
0.76980 0.89029 0.93680 0.81252 0.91222 0.95358 0.90591 0.90394
0.90203 0.90673 0.92043 0.90746 0.90263 0.90306 0.92348
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.66 19.25 29.55 0.57 -1.09 16
2 C -0.20 -2.15 13.46 -37.12 -0.50 -2.65 16
3 C 0.23 2.85 6.15 -6.83 -0.04 2.81 16
4 N -0.74 -8.82 5.54 -63.16 -0.35 -9.17 16
5 C 0.50 7.69 7.87 -10.98 -0.09 7.60 16
6 O -0.48 -10.19 16.02 5.56 0.09 -10.10 16
7 C 0.04 0.55 6.17 -4.97 -0.03 0.51 16
8 N -0.64 -9.60 2.93 -115.06 -0.34 -9.94 16
9 C 0.05 0.59 5.27 -3.82 -0.02 0.57 16
10 C 0.14 1.66 3.29 -66.96 -0.22 1.44 16
11 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
12 C -0.12 -0.99 6.47 -24.90 -0.16 -1.15 16
13 C -0.13 -1.08 7.08 -24.59 -0.17 -1.26 16
14 C 0.10 1.16 6.69 -2.53 -0.02 1.15 16
15 N -0.62 -9.18 3.07 -163.02 -0.50 -9.68 16
16 C 0.54 10.77 7.44 -10.98 -0.08 10.69 16
17 O -0.46 -10.35 11.81 5.56 0.07 -10.29 16
18 C -0.14 -3.16 5.16 36.01 0.19 -2.98 16
19 S -0.05 -1.36 20.57 -107.50 -2.21 -3.57 16
20 C -0.54 -16.06 9.50 30.94 0.29 -15.77 16
21 H 0.07 1.94 7.80 -52.48 -0.41 1.54 16
22 C 0.07 2.20 5.49 -17.43 -0.10 2.10 16
23 N -0.87 -27.29 13.22 55.49 0.73 -26.56 16
24 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16
25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
28 H 0.22 1.11 7.80 -54.08 -0.42 0.69 16
29 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16
30 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16
31 H 0.40 3.48 8.45 -40.82 -0.34 3.14 16
32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16
33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
34 H 0.36 6.16 7.09 -39.29 -0.28 5.88 16
35 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16
36 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16
37 H 0.08 0.53 7.80 -51.93 -0.40 0.12 16
38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
40 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16
41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16
42 H 0.07 0.88 7.47 -51.93 -0.39 0.49 16
43 H 0.08 1.68 8.14 -51.92 -0.42 1.26 16
44 H 0.08 1.64 7.84 -51.91 -0.41 1.23 16
45 H 0.27 7.82 8.31 -40.82 -0.34 7.48 16
LS Contribution 393.51 15.07 5.93 5.93
Total: -1.00 -38.60 393.51 -8.84 -47.44
By element:
Atomic # 1 Polarization: 13.55 SS G_CDS: -6.86 Total: 6.69 kcal
Atomic # 6 Polarization: 2.36 SS G_CDS: -0.38 Total: 1.98 kcal
Atomic # 7 Polarization: -54.89 SS G_CDS: -0.45 Total: -55.34 kcal
Atomic # 8 Polarization: -20.54 SS G_CDS: 0.15 Total: -20.39 kcal
Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal
Atomic # 16 Polarization: -1.36 SS G_CDS: -2.21 Total: -3.57 kcal
Total LS contribution 5.93 Total: 5.93 kcal
Total: -38.60 -8.84 -47.44 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001483921534.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.285 kcal
(2) G-P(sol) polarization free energy of solvation -38.602 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.683 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.444 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.841 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds