Wall clock time and date at job start Wed Apr 1 2020 01:40:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17393 * 1
3 3 C 1.47205 * 179.97438 * 2 1
4 4 N 1.46493 * 109.46884 * 159.61414 * 3 2 1
5 5 C 1.34781 * 119.99903 * 179.97438 * 4 3 2
6 6 O 1.21279 * 120.00124 * 0.02562 * 5 4 3
7 7 C 1.50698 * 119.99887 * 179.97438 * 5 4 3
8 8 N 1.46907 * 109.46829 * 180.02562 * 7 5 4
9 9 C 1.46904 * 110.99692 * 180.02562 * 8 7 5
10 10 C 1.52998 * 109.46592 * 179.97438 * 9 8 7
11 11 H 1.09006 * 110.00099 * 64.64601 * 10 9 8
12 12 C 1.54317 * 109.77089 * 185.79558 * 10 9 8
13 13 C 1.55155 * 102.86329 * 141.88605 * 12 10 9
14 14 C 1.54905 * 101.58269 * 324.30621 * 13 12 10
15 15 N 1.47014 * 109.88728 * 303.54656 * 10 9 8
16 16 C 1.34777 * 125.64925 * 61.67606 * 15 10 9
17 17 O 1.21278 * 119.99854 * 359.72596 * 16 15 10
18 18 C 1.50703 * 120.00161 * 179.71903 * 16 15 10
19 19 S 1.81002 * 109.47178 * 180.02562 * 18 16 15
20 20 C 1.76198 * 100.00092 * 180.02562 * 19 18 16
21 21 H 1.08004 * 120.00019 * 0.02562 * 20 19 18
22 22 C 1.38795 * 119.99810 * 179.97438 * 20 19 18
23 23 N 1.31626 * 120.00234 * 359.97438 * 22 20 19
24 24 Si 1.86801 * 119.99664 * 180.02562 * 22 20 19
25 25 H 1.48501 * 109.47231 * 60.00264 * 24 22 20
26 26 H 1.48505 * 109.47271 * 180.02562 * 24 22 20
27 27 H 1.48503 * 109.47260 * 299.99689 * 24 22 20
28 28 H 4.40641 * 5.51413 * 180.02562 * 4 1 2
29 29 H 1.09002 * 109.46727 * 39.61540 * 3 2 1
30 30 H 1.08999 * 109.46945 * 279.61586 * 3 2 1
31 31 H 0.97003 * 120.00517 * 0.02562 * 4 3 2
32 32 H 1.08992 * 109.47233 * 60.00729 * 7 5 4
33 33 H 1.09002 * 109.47357 * 299.99602 * 7 5 4
34 34 H 1.00903 * 111.00001 * 56.04669 * 8 7 5
35 35 H 1.08998 * 109.47269 * 60.00249 * 9 8 7
36 36 H 1.08993 * 109.47131 * 299.99501 * 9 8 7
37 37 H 1.09000 * 110.92706 * 23.47471 * 12 10 9
38 38 H 1.09001 * 110.74719 * 260.21581 * 12 10 9
39 39 H 1.08999 * 111.00772 * 206.22692 * 13 12 10
40 40 H 1.09008 * 111.03850 * 82.39448 * 13 12 10
41 41 H 1.09004 * 110.36707 * 278.16698 * 14 13 12
42 42 H 1.09003 * 110.46645 * 155.89221 * 14 13 12
43 43 H 1.09002 * 109.47152 * 60.00245 * 18 16 15
44 44 H 1.09001 * 109.46980 * 300.00345 * 18 16 15
45 45 H 0.97005 * 119.99806 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1739 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1337 1.2955 -0.4811
5 6 4.4587 1.5272 -0.5664
6 8 5.2472 0.6635 -0.2453
7 6 4.9603 2.8590 -1.0619
8 7 6.4294 2.8597 -1.0618
9 6 6.9552 4.1456 -1.5395
10 6 8.4847 4.1082 -1.5245
11 1 8.8465 3.3655 -2.2357
12 6 9.0444 5.5003 -1.8852
13 6 10.2756 5.6305 -0.9502
14 6 9.7757 4.9068 0.3249
15 7 8.9637 3.7817 -0.1735
16 6 8.7078 2.6404 0.4962
17 8 8.0243 1.7782 -0.0140
18 6 9.2711 2.4356 1.8789
19 16 8.7547 0.8186 2.5073
20 6 9.5297 0.8435 4.0895
21 1 10.1104 1.7021 4.3929
22 6 9.3931 -0.2399 4.9462
23 7 8.6842 -1.2857 4.5770
24 14 10.2142 -0.2132 6.6239
25 1 9.6951 0.9342 7.4109
26 1 9.9179 -1.4798 7.3403
27 1 11.6828 -0.0731 6.4541
28 1 -1.0503 -0.0003 0.0003
29 1 3.0096 -0.7909 -0.6553
30 1 3.0094 -0.1708 1.0132
31 1 2.5030 1.9865 -0.7376
32 1 4.5963 3.6508 -0.4073
33 1 4.5974 3.0299 -2.0754
34 1 6.7914 2.0943 -1.6106
35 1 6.6053 4.9460 -0.8876
36 1 6.6058 4.3259 -2.5560
37 1 8.3140 6.2808 -1.6720
38 1 9.3492 5.5348 -2.9312
39 1 10.5001 6.6768 -0.7430
40 1 11.1432 5.1233 -1.3725
41 1 9.1640 5.5785 0.9273
42 1 10.6187 4.5368 0.9085
43 1 8.9014 3.2182 2.5414
44 1 10.3595 2.4784 1.8378
45 1 8.5890 -2.0430 5.1757
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001483921534.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 01:40:15
Heat of formation + Delta-G solvation = -11.133123 kcal
Electronic energy + Delta-G solvation = -27116.775911 eV
Core-core repulsion = 23262.136228 eV
Total energy + Delta-G solvation = -3854.639683 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 2.96 seconds
Orbital eigenvalues (eV)
-41.02018 -40.53636 -38.13691 -36.71961 -36.07008 -34.56613 -33.56591 -32.75759
-31.41785 -30.00006 -28.91195 -27.63200 -26.73776 -24.69485 -23.17197 -21.99235
-21.48221 -20.18927 -19.68914 -19.28405 -18.10974 -17.82265 -17.30930 -17.02553
-16.86599 -16.76947 -16.25847 -15.93689 -15.66805 -15.27738 -15.03751 -14.85360
-14.57970 -14.49921 -14.36047 -14.06613 -13.90999 -13.83332 -13.36796 -13.09896
-12.97812 -12.88259 -12.81617 -12.58518 -12.41356 -12.03386 -11.89824 -11.81750
-11.67582 -11.53655 -11.47607 -11.11297 -10.72752 -10.32382 -10.14267 -10.10001
-9.47721 -8.78620 -8.58446 -8.31108 -6.07555 1.29074 1.42164 1.42422
1.47586 1.60842 1.72349 1.83009 2.05796 2.27978 2.38242 2.50149
3.01144 3.32302 3.35090 3.41960 3.71604 3.83414 3.91641 4.01652
4.18440 4.29911 4.31579 4.39103 4.42471 4.43990 4.51613 4.52514
4.56859 4.63442 4.68746 4.79317 4.92437 4.96954 5.03821 5.16057
5.21601 5.36771 5.41233 5.43486 5.69646 6.18215 6.20854 6.53763
6.55533 6.65608 6.77293 7.08475 7.38829 7.65474 8.77547
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.006330 B = 0.004331 C = 0.002658
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4422.653944 B = 6463.550130 C =10532.957227
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.249 4.249
3 C 0.231 3.769
4 N -0.722 5.722
5 C 0.496 3.504
6 O -0.550 6.550
7 C 0.052 3.948
8 N -0.672 5.672
9 C 0.055 3.945
10 C 0.134 3.866
11 H 0.055 0.945
12 C -0.111 4.111
13 C -0.121 4.121
14 C 0.089 3.911
15 N -0.615 5.615
16 C 0.535 3.465
17 O -0.490 6.490
18 C -0.117 4.117
19 S -0.138 6.138
20 C -0.551 4.551
21 H 0.076 0.924
22 C 0.013 3.987
23 N -0.912 5.912
24 Si 0.998 3.002
25 H -0.262 1.262
26 H -0.277 1.277
27 H -0.261 1.261
28 H 0.261 0.739
29 H 0.080 0.920
30 H 0.067 0.933
31 H 0.415 0.585
32 H 0.108 0.892
33 H 0.083 0.917
34 H 0.347 0.653
35 H 0.076 0.924
36 H 0.058 0.942
37 H 0.095 0.905
38 H 0.100 0.900
39 H 0.109 0.891
40 H 0.073 0.927
41 H 0.072 0.928
42 H 0.066 0.934
43 H 0.086 0.914
44 H 0.089 0.911
45 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.061 18.791 -16.230 26.431
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C -0.250 4.250
3 C 0.108 3.892
4 N -0.378 5.378
5 C 0.282 3.718
6 O -0.425 6.425
7 C -0.080 4.080
8 N -0.308 5.308
9 C -0.074 4.074
10 C 0.030 3.970
11 H 0.073 0.927
12 C -0.149 4.149
13 C -0.159 4.159
14 C -0.033 4.033
15 N -0.353 5.353
16 C 0.321 3.679
17 O -0.361 6.361
18 C -0.268 4.268
19 S 0.089 5.911
20 C -0.699 4.699
21 H 0.095 0.905
22 C -0.192 4.192
23 N -0.548 5.548
24 Si 0.819 3.181
25 H -0.187 1.187
26 H -0.202 1.202
27 H -0.186 1.186
28 H 0.277 0.723
29 H 0.098 0.902
30 H 0.085 0.915
31 H 0.252 0.748
32 H 0.126 0.874
33 H 0.101 0.899
34 H 0.169 0.831
35 H 0.094 0.906
36 H 0.076 0.924
37 H 0.113 0.887
38 H 0.119 0.881
39 H 0.127 0.873
40 H 0.092 0.908
41 H 0.090 0.910
42 H 0.085 0.915
43 H 0.104 0.896
44 H 0.108 0.892
45 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -9.505 16.774 -16.022 25.068
hybrid contribution 0.544 0.436 0.868 1.113
sum -8.961 17.209 -15.153 24.619
Atomic orbital electron populations
1.25869 0.96495 0.95453 0.98053 1.22896 0.94221 1.04626 1.03208
1.17796 0.84434 0.86876 1.00069 1.45834 1.06932 1.16487 1.68519
1.21390 0.81797 0.90778 0.77791 1.90908 1.55988 1.47741 1.47886
1.21781 0.91065 0.93475 1.01724 1.60574 1.04198 1.04855 1.61179
1.22489 0.94268 0.91645 0.99009 1.21774 0.93478 0.98181 0.83584
0.92679 1.22638 0.97684 0.93416 1.01194 1.22751 0.97688 1.01960
0.93507 1.22514 0.94554 0.87997 0.98253 1.48318 1.53121 1.16542
1.17282 1.19354 0.80501 0.82052 0.85991 1.90739 1.35182 1.42088
1.68130 1.23278 1.03515 1.02379 0.97650 1.85753 1.69349 1.17933
1.18052 1.23217 1.37427 1.06733 1.02530 0.90539 1.26133 0.95740
0.93874 1.03418 1.70214 1.39363 1.06828 1.38441 0.85028 0.78797
0.78021 0.76261 1.18678 1.20172 1.18582 0.72326 0.90189 0.91518
0.74836 0.87442 0.89907 0.83120 0.90602 0.92371 0.88683 0.88118
0.87264 0.90801 0.90993 0.91522 0.89583 0.89239 0.92125
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.20 19.25 74.32 1.43 -0.77 16
2 C -0.25 -5.45 13.46 31.13 0.42 -5.03 16
3 C 0.23 6.33 6.15 84.58 0.52 6.85 16
4 N -0.72 -18.00 5.54 -472.14 -2.61 -20.61 16
5 C 0.50 16.12 7.87 87.66 0.69 16.81 16
6 O -0.55 -25.67 16.02 -3.03 -0.05 -25.72 16
7 C 0.05 1.25 6.17 85.55 0.53 1.78 16
8 N -0.67 -20.47 2.93 -517.93 -1.52 -21.99 16
9 C 0.06 1.15 5.27 86.30 0.45 1.61 16
10 C 0.13 2.90 3.29 45.34 0.15 3.05 16
11 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16
12 C -0.11 -1.31 6.47 31.78 0.21 -1.11 16
13 C -0.12 -1.54 7.08 31.98 0.23 -1.32 16
14 C 0.09 1.87 6.69 86.85 0.58 2.45 16
15 N -0.61 -17.83 3.07 -788.07 -2.42 -20.25 16
16 C 0.54 22.11 7.44 87.66 0.65 22.76 16
17 O -0.49 -23.69 11.81 -3.02 -0.04 -23.73 16
18 C -0.12 -5.33 5.16 71.24 0.37 -4.97 16
19 S -0.14 -8.42 20.57 -56.49 -1.16 -9.58 16
20 C -0.55 -33.96 9.50 67.95 0.65 -33.32 16
21 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16
22 C 0.01 0.78 5.49 84.86 0.47 1.24 16
23 N -0.91 -59.58 13.22 21.65 0.29 -59.30 16
24 Si 1.00 46.20 29.55 68.60 2.03 48.22 16
25 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16
26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16
27 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16
28 H 0.26 1.54 7.80 -4.40 -0.03 1.51 16
29 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16
30 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16
31 H 0.42 7.08 8.45 -92.71 -0.78 6.30 16
32 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16
33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16
34 H 0.35 12.44 7.09 -89.69 -0.64 11.80 16
35 H 0.08 1.49 8.06 -2.39 -0.02 1.47 16
36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16
37 H 0.09 0.83 7.80 -2.39 -0.02 0.81 16
38 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16
39 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16
40 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16
41 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16
42 H 0.07 1.49 7.47 -2.39 -0.02 1.47 16
43 H 0.09 3.74 8.14 -2.39 -0.02 3.73 16
44 H 0.09 3.82 7.84 -2.39 -0.02 3.80 16
45 H 0.27 16.35 8.31 -92.70 -0.77 15.58 16
Total: -1.00 -92.52 393.51 1.44 -91.08
By element:
Atomic # 1 Polarization: 32.24 SS G_CDS: -0.41 Total: 31.83 kcal
Atomic # 6 Polarization: 2.71 SS G_CDS: 7.34 Total: 10.04 kcal
Atomic # 7 Polarization: -115.88 SS G_CDS: -6.26 Total: -122.14 kcal
Atomic # 8 Polarization: -49.37 SS G_CDS: -0.08 Total: -49.45 kcal
Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal
Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal
Total: -92.52 1.44 -91.08 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001483921534.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.944 kcal
(2) G-P(sol) polarization free energy of solvation -92.520 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.576 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.442 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.077 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.133 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.96 seconds