Wall clock time and date at job start Wed Apr 1 2020 00:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 5 5 H 1.09001 * 109.47002 * 59.99738 * 4 2 1 6 6 C 1.52997 * 109.47164 * 179.97438 * 4 2 1 7 7 C 1.53003 * 109.46992 * 185.00330 * 6 4 2 8 8 N 1.46497 * 109.47111 * 180.02562 * 7 6 4 9 9 C 1.34780 * 120.00270 * 180.02562 * 8 7 6 10 10 O 1.21682 * 119.99247 * 359.97438 * 9 8 7 11 11 C 1.46727 * 120.00018 * 179.97438 * 9 8 7 12 12 C 1.34878 * 125.05316 * 180.02562 * 11 9 8 13 13 C 1.38939 * 113.65430 * 179.97438 * 12 11 9 14 14 C 1.47329 * 122.96167 * 179.97438 * 13 12 11 15 15 N 1.34775 * 120.00121 * 179.97438 * 14 13 12 16 16 O 1.21616 * 120.00283 * 0.02562 * 14 13 12 17 17 C 1.36657 * 114.07624 * 0.02562 * 13 12 11 18 18 S 1.70599 * 110.52966 * 359.72054 * 17 13 12 19 19 N 1.46504 * 109.46883 * 300.00241 * 4 2 1 20 20 C 1.36932 * 120.00287 * 85.00233 * 19 4 2 21 21 H 1.08003 * 120.00064 * 359.97438 * 20 19 4 22 22 C 1.38811 * 120.00254 * 179.97438 * 20 19 4 23 23 N 1.31619 * 119.99704 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00064 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47242 * 90.00123 * 24 22 20 26 26 H 1.48503 * 109.47238 * 209.99537 * 24 22 20 27 27 H 1.48498 * 109.47308 * 329.99895 * 24 22 20 28 28 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 30 30 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 31 31 H 1.09000 * 109.47140 * 239.99453 * 2 1 3 32 32 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 34 34 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 35 35 H 1.08998 * 109.47097 * 304.99739 * 6 4 2 36 36 H 1.09002 * 109.47223 * 64.99920 * 6 4 2 37 37 H 1.08998 * 109.46717 * 299.99642 * 7 6 4 38 38 H 1.09000 * 109.46966 * 59.99762 * 7 6 4 39 39 H 0.96996 * 119.99855 * 359.97438 * 8 7 6 40 40 H 1.08000 * 123.17399 * 359.97438 * 12 11 9 41 41 H 0.97002 * 119.99723 * 0.02562 * 15 14 13 42 42 H 0.97001 * 120.00306 * 180.02562 * 15 14 13 43 43 H 1.07996 * 124.73603 * 180.02562 * 17 13 12 44 44 H 0.97003 * 119.99624 * 264.99510 * 19 4 2 45 45 H 0.97004 * 119.99701 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6766 -1.7488 1.2494 6 6 3.5700 -0.7217 1.2490 7 6 4.0799 -1.5491 2.4307 8 7 5.5449 -1.5492 2.4308 9 6 6.2187 -2.2191 3.3867 10 8 5.6102 -2.8234 4.2498 11 6 7.6860 -2.2195 3.3863 12 6 8.4607 -2.8537 4.2902 13 6 9.8226 -2.6969 4.0648 14 6 10.8527 -3.3016 4.9273 15 7 12.1584 -3.1111 4.6527 16 8 10.5249 -3.9735 5.8865 17 6 10.1226 -1.9315 2.9731 18 16 8.6952 -1.4004 2.2044 19 7 1.5516 -0.0304 2.4455 20 6 0.3101 -0.3208 2.9449 21 1 -0.3093 -1.0588 2.4568 22 6 -0.1525 0.3333 4.0785 23 7 0.6025 1.2322 4.6736 24 14 -1.8463 -0.0624 4.7593 25 1 -1.7379 -1.1681 5.7447 26 1 -2.4056 1.1412 5.4256 27 1 -2.7421 -0.4748 3.6491 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.9329 -1.1564 0.3177 36 1 3.9337 0.3019 1.3383 37 1 3.7169 -1.1144 3.3620 38 1 3.7161 -2.5727 2.3414 39 1 6.0299 -1.0677 1.7425 40 1 8.0600 -3.4290 5.1118 41 1 12.4199 -2.5755 3.8874 42 1 12.8366 -3.5095 5.2203 43 1 11.1235 -1.6996 2.6404 44 1 2.1078 0.6326 2.8837 45 1 0.2795 1.6891 5.4660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485792687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:00 Heat of formation + Delta-G solvation = -45.068250 kcal Electronic energy + Delta-G solvation = -26362.764511 eV Core-core repulsion = 22506.653291 eV Total energy + Delta-G solvation = -3856.111221 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -40.31093 -39.52505 -37.61962 -37.03412 -34.77505 -34.15693 -32.82503 -31.40544 -30.21686 -29.19836 -26.52785 -26.05273 -25.32874 -23.50157 -22.74018 -21.25341 -20.69462 -19.43337 -19.09977 -18.56940 -17.47794 -17.33763 -17.12191 -15.90630 -15.74801 -15.52237 -15.15655 -14.83370 -14.62347 -14.23679 -13.88578 -13.76906 -13.51765 -13.46779 -13.13303 -13.02900 -12.93357 -12.54519 -12.42368 -11.67023 -11.37427 -11.31336 -11.19345 -10.85393 -10.84154 -10.67997 -10.46683 -10.37415 -10.20485 -10.14174 -10.08964 -10.02097 -9.76191 -9.39822 -9.38726 -9.07355 -8.91226 -8.79964 -6.90934 -5.72765 -2.99922 -0.01109 0.95522 1.32629 1.38265 2.88452 2.98969 3.21301 3.25602 3.47033 3.52451 3.53883 4.31087 4.57742 4.63021 4.71252 4.78538 5.20542 5.35903 5.37199 5.50273 5.59214 5.69831 5.74215 5.81145 5.85831 5.95838 6.02680 6.17044 6.28412 6.33850 6.35089 6.40279 6.51298 6.61456 6.65652 6.72702 6.86037 6.86697 6.86998 7.08238 7.38454 7.48071 7.75602 7.84193 8.18640 8.45425 9.57237 10.13432 10.48367 11.49683 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015776 B = 0.002334 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.472327 B =11993.309546 C =13262.522200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C -0.138 4.138 4 C 0.183 3.817 5 H 0.049 0.951 6 C -0.135 4.135 7 C 0.122 3.878 8 N -0.722 5.722 9 C 0.582 3.418 10 O -0.516 6.516 11 C -0.258 4.258 12 C -0.018 4.018 13 C -0.161 4.161 14 C 0.583 3.417 15 N -0.851 5.851 16 O -0.532 6.532 17 C -0.208 4.208 18 S 0.249 5.751 19 N -0.717 5.717 20 C -0.230 4.230 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.931 5.931 24 Si 0.900 3.100 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.283 1.283 28 H 0.039 0.961 29 H 0.088 0.912 30 H 0.028 0.972 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.035 0.965 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.392 0.608 40 H 0.166 0.834 41 H 0.399 0.601 42 H 0.406 0.594 43 H 0.176 0.824 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.907 -3.327 -11.009 26.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 C -0.196 4.196 4 C 0.072 3.928 5 H 0.067 0.933 6 C -0.173 4.173 7 C 0.000 4.000 8 N -0.373 5.373 9 C 0.367 3.633 10 O -0.393 6.393 11 C -0.379 4.379 12 C -0.048 4.048 13 C -0.179 4.179 14 C 0.367 3.633 15 N -0.415 5.415 16 O -0.409 6.409 17 C -0.348 4.348 18 S 0.517 5.483 19 N -0.359 5.359 20 C -0.362 4.362 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.732 3.268 25 H -0.218 1.218 26 H -0.220 1.220 27 H -0.208 1.208 28 H 0.058 0.942 29 H 0.107 0.893 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.226 0.774 40 H 0.183 0.817 41 H 0.228 0.772 42 H 0.238 0.762 43 H 0.193 0.807 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 22.534 -3.332 -11.050 25.317 hybrid contribution 0.395 -0.389 1.234 1.353 sum 22.929 -3.721 -9.816 25.218 Atomic orbital electron populations 1.21850 0.95304 1.00806 1.01952 1.21684 0.96637 0.96496 0.98195 1.21755 0.99349 0.96966 1.01505 1.20186 0.89171 0.95562 0.87836 0.93264 1.22110 0.98651 1.00039 0.96545 1.21547 0.76182 1.01044 1.01223 1.45994 1.08885 1.52836 1.29607 1.16911 0.84464 0.79798 0.82158 1.90896 1.68393 1.43293 1.36730 1.24358 0.98209 1.11112 1.04189 1.20368 0.90405 0.95838 0.98228 1.19040 0.94488 1.05448 0.98966 1.17614 0.82459 0.79526 0.83748 1.43660 1.07159 1.56659 1.34009 1.90879 1.81632 1.39341 1.29023 1.26064 1.05193 1.03163 1.00347 1.83014 0.93091 1.46404 1.25796 1.42398 1.17960 1.47354 1.28164 1.19178 0.92681 1.17627 1.06677 0.91069 1.24691 0.98261 0.99437 0.98498 1.69646 1.36839 1.29281 1.22220 0.86290 0.84402 0.77145 0.78974 1.21808 1.21974 1.20842 0.94197 0.89347 0.95257 0.93643 0.93978 0.94624 0.91258 0.91946 0.91202 0.89293 0.91458 0.77442 0.81707 0.77200 0.76222 0.80670 0.78263 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.26 37.16 0.31 -2.25 16 2 C -0.11 -1.79 2.80 -90.62 -0.25 -2.05 16 3 C -0.14 -2.21 8.68 37.16 0.32 -1.89 16 4 C 0.18 3.29 2.19 -67.93 -0.15 3.15 16 5 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 6 C -0.13 -1.94 4.37 -26.73 -0.12 -2.06 16 7 C 0.12 1.96 5.56 -4.04 -0.02 1.94 16 8 N -0.72 -9.62 5.55 -61.61 -0.34 -9.96 16 9 C 0.58 8.91 7.78 -12.83 -0.10 8.81 16 10 O -0.52 -10.31 16.79 5.21 0.09 -10.23 16 11 C -0.26 -3.05 6.37 -37.35 -0.24 -3.29 16 12 C -0.02 -0.22 9.47 -40.51 -0.38 -0.60 16 13 C -0.16 -1.53 5.82 -106.51 -0.62 -2.15 16 14 C 0.58 5.82 8.06 -12.56 -0.10 5.72 16 15 N -0.85 -4.22 8.84 30.41 0.27 -3.95 16 16 O -0.53 -7.79 17.52 5.26 0.09 -7.70 16 17 C -0.21 -1.24 10.41 30.16 0.31 -0.93 16 18 S 0.25 1.71 22.09 -107.50 -2.37 -0.67 16 19 N -0.72 -16.31 3.69 -53.42 -0.20 -16.50 16 20 C -0.23 -5.98 7.57 -15.06 -0.11 -6.10 16 21 H 0.07 1.82 7.39 -52.48 -0.39 1.44 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 24 Si 0.90 22.30 29.55 -169.99 -5.02 17.28 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.09 1.90 6.01 -51.93 -0.31 1.58 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.59 6.55 -51.93 -0.34 0.25 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 1.32 7.60 -51.93 -0.39 0.92 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.99 6.71 -51.93 -0.35 0.64 16 37 H 0.09 1.78 7.75 -51.93 -0.40 1.38 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.39 3.90 7.55 -40.82 -0.31 3.59 16 40 H 0.17 2.33 7.95 -52.49 -0.42 1.91 16 41 H 0.40 0.65 7.29 -40.82 -0.30 0.36 16 42 H 0.41 1.56 8.93 -40.82 -0.36 1.20 16 43 H 0.18 0.32 6.98 -52.49 -0.37 -0.05 16 44 H 0.38 9.45 7.80 -40.82 -0.32 9.13 16 45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 385.02 15.07 5.80 5.80 Total: -1.00 -34.94 385.02 -8.56 -43.50 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -6.35 Total: 11.31 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -1.25 Total: -2.14 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.45 Total: -57.15 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.18 Total: -17.92 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.37 Total: -0.67 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.94 -8.56 -43.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485792687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.567 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds