Wall clock time and date at job start Wed Apr 1 2020 00:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 5 5 H 1.09001 * 109.47002 * 59.99738 * 4 2 1 6 6 C 1.52997 * 109.47164 * 179.97438 * 4 2 1 7 7 C 1.53003 * 109.46992 * 185.00330 * 6 4 2 8 8 N 1.46497 * 109.47111 * 180.02562 * 7 6 4 9 9 C 1.34780 * 120.00270 * 180.02562 * 8 7 6 10 10 O 1.21682 * 119.99247 * 359.97438 * 9 8 7 11 11 C 1.46727 * 120.00018 * 179.97438 * 9 8 7 12 12 C 1.34878 * 125.05316 * 180.02562 * 11 9 8 13 13 C 1.38939 * 113.65430 * 179.97438 * 12 11 9 14 14 C 1.47329 * 122.96167 * 179.97438 * 13 12 11 15 15 N 1.34775 * 120.00121 * 179.97438 * 14 13 12 16 16 O 1.21616 * 120.00283 * 0.02562 * 14 13 12 17 17 C 1.36657 * 114.07624 * 0.02562 * 13 12 11 18 18 S 1.70599 * 110.52966 * 359.72054 * 17 13 12 19 19 N 1.46504 * 109.46883 * 300.00241 * 4 2 1 20 20 C 1.36932 * 120.00287 * 85.00233 * 19 4 2 21 21 H 1.08003 * 120.00064 * 359.97438 * 20 19 4 22 22 C 1.38811 * 120.00254 * 179.97438 * 20 19 4 23 23 N 1.31619 * 119.99704 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00064 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47242 * 90.00123 * 24 22 20 26 26 H 1.48503 * 109.47238 * 209.99537 * 24 22 20 27 27 H 1.48498 * 109.47308 * 329.99895 * 24 22 20 28 28 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 30 30 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 31 31 H 1.09000 * 109.47140 * 239.99453 * 2 1 3 32 32 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 34 34 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 35 35 H 1.08998 * 109.47097 * 304.99739 * 6 4 2 36 36 H 1.09002 * 109.47223 * 64.99920 * 6 4 2 37 37 H 1.08998 * 109.46717 * 299.99642 * 7 6 4 38 38 H 1.09000 * 109.46966 * 59.99762 * 7 6 4 39 39 H 0.96996 * 119.99855 * 359.97438 * 8 7 6 40 40 H 1.08000 * 123.17399 * 359.97438 * 12 11 9 41 41 H 0.97002 * 119.99723 * 0.02562 * 15 14 13 42 42 H 0.97001 * 120.00306 * 180.02562 * 15 14 13 43 43 H 1.07996 * 124.73603 * 180.02562 * 17 13 12 44 44 H 0.97003 * 119.99624 * 264.99510 * 19 4 2 45 45 H 0.97004 * 119.99701 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6766 -1.7488 1.2494 6 6 3.5700 -0.7217 1.2490 7 6 4.0799 -1.5491 2.4307 8 7 5.5449 -1.5492 2.4308 9 6 6.2187 -2.2191 3.3867 10 8 5.6102 -2.8234 4.2498 11 6 7.6860 -2.2195 3.3863 12 6 8.4607 -2.8537 4.2902 13 6 9.8226 -2.6969 4.0648 14 6 10.8527 -3.3016 4.9273 15 7 12.1584 -3.1111 4.6527 16 8 10.5249 -3.9735 5.8865 17 6 10.1226 -1.9315 2.9731 18 16 8.6952 -1.4004 2.2044 19 7 1.5516 -0.0304 2.4455 20 6 0.3101 -0.3208 2.9449 21 1 -0.3093 -1.0588 2.4568 22 6 -0.1525 0.3333 4.0785 23 7 0.6025 1.2322 4.6736 24 14 -1.8463 -0.0624 4.7593 25 1 -1.7379 -1.1681 5.7447 26 1 -2.4056 1.1412 5.4256 27 1 -2.7421 -0.4748 3.6491 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.9329 -1.1564 0.3177 36 1 3.9337 0.3019 1.3383 37 1 3.7169 -1.1144 3.3620 38 1 3.7161 -2.5727 2.3414 39 1 6.0299 -1.0677 1.7425 40 1 8.0600 -3.4290 5.1118 41 1 12.4199 -2.5755 3.8874 42 1 12.8366 -3.5095 5.2203 43 1 11.1235 -1.6996 2.6404 44 1 2.1078 0.6326 2.8837 45 1 0.2795 1.6891 5.4660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485792687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:59 Heat of formation + Delta-G solvation = -73.634761 kcal Electronic energy + Delta-G solvation = -26364.003248 eV Core-core repulsion = 22506.653291 eV Total energy + Delta-G solvation = -3857.349957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.18370 -40.61327 -39.03965 -37.92701 -36.11570 -34.82298 -34.71100 -32.73041 -31.53031 -30.56407 -27.87852 -27.16753 -26.41653 -25.14146 -23.98612 -22.56912 -21.67479 -20.21555 -20.18883 -19.79316 -19.11935 -18.14183 -18.03423 -17.17552 -16.80966 -16.57709 -16.44087 -16.01766 -15.88079 -15.53314 -15.31670 -15.11154 -14.86718 -14.60321 -14.22353 -14.12064 -13.96971 -13.80423 -13.72595 -13.03853 -12.91064 -12.70352 -12.59022 -12.40791 -12.36528 -12.25297 -12.03448 -11.81947 -11.75239 -11.44058 -11.25055 -11.11339 -11.10400 -10.77296 -10.76265 -10.35500 -10.01486 -9.65848 -8.85758 -7.85669 -5.08438 -0.72209 0.27426 0.52293 0.63312 1.45905 1.48169 1.54194 1.89668 1.98392 2.31533 2.57181 2.60961 3.48330 3.65091 3.90775 3.92947 4.00732 4.03598 4.08691 4.19521 4.34983 4.43986 4.51197 4.58770 4.68329 4.83949 4.89688 4.94078 4.97931 5.02223 5.09046 5.19498 5.22231 5.33216 5.38093 5.45583 5.49805 5.61498 5.71249 5.84871 5.90356 6.37400 6.38876 6.40934 7.06597 7.28065 7.44499 8.22980 8.43997 9.38038 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015776 B = 0.002334 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.472327 B =11993.309546 C =13262.522200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 C -0.133 4.133 4 C 0.174 3.826 5 H 0.039 0.961 6 C -0.119 4.119 7 C 0.132 3.868 8 N -0.705 5.705 9 C 0.578 3.422 10 O -0.581 6.581 11 C -0.303 4.303 12 C -0.030 4.030 13 C -0.191 4.191 14 C 0.580 3.420 15 N -0.822 5.822 16 O -0.595 6.595 17 C -0.170 4.170 18 S 0.349 5.651 19 N -0.724 5.724 20 C -0.205 4.205 21 H 0.074 0.926 22 C -0.080 4.080 23 N -0.970 5.970 24 Si 0.952 3.048 25 H -0.298 1.298 26 H -0.301 1.301 27 H -0.269 1.269 28 H 0.038 0.962 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.029 0.971 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.040 0.960 38 H 0.054 0.946 39 H 0.413 0.587 40 H 0.125 0.875 41 H 0.420 0.580 42 H 0.415 0.585 43 H 0.231 0.769 44 H 0.372 0.628 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.109 -2.462 -15.586 31.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C -0.190 4.190 4 C 0.065 3.935 5 H 0.057 0.943 6 C -0.157 4.157 7 C 0.009 3.991 8 N -0.357 5.357 9 C 0.365 3.635 10 O -0.462 6.462 11 C -0.423 4.423 12 C -0.062 4.062 13 C -0.208 4.208 14 C 0.364 3.636 15 N -0.387 5.387 16 O -0.477 6.477 17 C -0.310 4.310 18 S 0.617 5.383 19 N -0.363 5.363 20 C -0.338 4.338 21 H 0.092 0.908 22 C -0.272 4.272 23 N -0.622 5.622 24 Si 0.784 3.216 25 H -0.227 1.227 26 H -0.228 1.228 27 H -0.194 1.194 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.250 0.750 40 H 0.143 0.857 41 H 0.252 0.748 42 H 0.247 0.753 43 H 0.247 0.753 44 H 0.204 0.796 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 25.799 -2.451 -15.754 30.328 hybrid contribution -0.467 -0.659 2.459 2.588 sum 25.332 -3.111 -13.295 28.778 Atomic orbital electron populations 1.21795 0.96696 1.00405 1.00925 1.21613 0.95429 0.97051 0.98280 1.21690 1.00893 0.96066 1.00367 1.20472 0.91666 0.94566 0.86760 0.94281 1.21992 0.95748 1.00535 0.97439 1.21216 0.77818 1.00179 0.99935 1.45711 1.07756 1.52446 1.29742 1.17472 0.86141 0.78648 0.81253 1.90852 1.70243 1.45991 1.39140 1.24044 0.96706 1.14184 1.07368 1.20274 0.92409 0.95901 0.97608 1.18818 0.92880 1.08083 1.01051 1.17791 0.83897 0.78877 0.83025 1.43414 1.05446 1.55550 1.34271 1.90851 1.82745 1.42371 1.31730 1.26708 1.07742 0.99036 0.97485 1.82637 0.90715 1.43087 1.21906 1.42537 1.16798 1.47332 1.29673 1.19468 0.93440 1.15522 1.05343 0.90838 1.25312 1.01269 1.00697 0.99894 1.69784 1.38283 1.31281 1.22842 0.85428 0.81676 0.76148 0.78367 1.22665 1.22791 1.19399 0.94254 0.93486 0.93134 0.89857 0.91496 0.92915 0.95208 0.87514 0.90259 0.94164 0.92797 0.74991 0.85728 0.74782 0.75291 0.75269 0.79571 0.94675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 8.26 71.98 0.59 -4.24 16 2 C -0.10 -3.09 2.80 -10.79 -0.03 -3.12 16 3 C -0.13 -3.86 8.68 71.98 0.63 -3.23 16 4 C 0.17 6.04 2.19 44.99 0.10 6.14 16 5 H 0.04 1.45 8.08 -2.39 -0.02 1.43 16 6 C -0.12 -3.13 4.37 30.59 0.13 -3.00 16 7 C 0.13 4.29 5.56 86.38 0.48 4.77 16 8 N -0.70 -18.35 5.55 -467.04 -2.59 -20.94 16 9 C 0.58 18.45 7.78 86.46 0.67 19.13 16 10 O -0.58 -25.43 16.79 -4.29 -0.07 -25.51 16 11 C -0.30 -7.12 6.37 23.72 0.15 -6.97 16 12 C -0.03 -0.77 9.47 21.67 0.21 -0.56 16 13 C -0.19 -3.38 5.82 -21.09 -0.12 -3.50 16 14 C 0.58 11.25 8.06 86.64 0.70 11.95 16 15 N -0.82 -5.91 8.84 -175.95 -1.56 -7.47 16 16 O -0.60 -18.53 17.52 -4.08 -0.07 -18.60 16 17 C -0.17 -1.22 10.41 67.45 0.70 -0.51 16 18 S 0.35 3.26 22.09 -56.49 -1.25 2.01 16 19 N -0.72 -33.59 3.69 -322.93 -1.19 -34.78 16 20 C -0.21 -10.94 7.57 84.03 0.64 -10.30 16 21 H 0.07 3.82 7.39 -2.91 -0.02 3.80 16 22 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 23 N -0.97 -59.82 13.06 21.65 0.28 -59.54 16 24 Si 0.95 47.49 29.55 68.60 2.03 49.52 16 25 H -0.30 -15.09 7.11 99.48 0.71 -14.39 16 26 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 27 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 28 H 0.04 1.31 8.14 -2.39 -0.02 1.30 16 29 H 0.05 2.00 6.01 -2.39 -0.01 1.99 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.07 1.59 6.55 -2.39 -0.02 1.58 16 33 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.03 1.09 7.60 -2.39 -0.02 1.08 16 35 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.08 2.00 6.71 -2.39 -0.02 1.98 16 37 H 0.04 1.71 7.75 -2.39 -0.02 1.70 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.41 7.00 7.55 -92.71 -0.70 6.30 16 40 H 0.12 4.13 7.95 -2.91 -0.02 4.11 16 41 H 0.42 -0.63 7.29 -92.71 -0.68 -1.31 16 42 H 0.41 2.25 8.93 -92.71 -0.83 1.43 16 43 H 0.23 -0.96 6.98 -2.91 -0.02 -0.98 16 44 H 0.37 18.99 7.80 -92.71 -0.72 18.27 16 45 H 0.24 14.93 8.31 -92.70 -0.77 14.16 16 Total: -1.00 -87.35 385.02 -0.97 -88.32 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: -1.86 Total: 24.58 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 5.31 Total: 2.41 kcal Atomic # 7 Polarization: -117.67 SS G_CDS: -5.06 Total: -122.73 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -0.14 Total: -44.11 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.25 Total: 2.01 kcal Total: -87.35 -0.97 -88.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485792687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.687 kcal (2) G-P(sol) polarization free energy of solvation -87.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds