Wall clock time and date at job start Wed Apr 1 2020 01:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 H 1.09001 * 109.46979 * 304.99867 * 3 2 1 5 5 C 1.52994 * 109.47180 * 184.99663 * 3 2 1 6 6 N 1.46504 * 109.47376 * 184.99567 * 5 3 2 7 7 C 1.34780 * 120.00203 * 179.97438 * 6 5 3 8 8 O 1.21278 * 119.99802 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99690 * 180.02562 * 7 6 5 10 10 S 1.81006 * 109.46738 * 180.02562 * 9 7 6 11 11 C 1.76201 * 99.99710 * 180.02562 * 10 9 7 12 12 H 1.08001 * 120.00058 * 359.97438 * 11 10 9 13 13 C 1.38804 * 119.99869 * 180.02562 * 11 10 9 14 14 N 1.31632 * 119.99711 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00135 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46634 * 90.00057 * 15 13 11 17 17 H 1.48501 * 109.47288 * 209.99889 * 15 13 11 18 18 H 1.48491 * 109.47132 * 330.00387 * 15 13 11 19 19 N 1.46504 * 109.46930 * 65.00065 * 3 2 1 20 20 C 1.34777 * 119.99854 * 274.99613 * 19 3 2 21 21 O 1.21633 * 119.99979 * 0.02562 * 20 19 3 22 22 C 1.47264 * 119.99990 * 180.27781 * 20 19 3 23 23 C 1.36762 * 126.94185 * 359.74999 * 22 20 19 24 24 N 1.34664 * 108.39829 * 179.97438 * 23 22 20 25 25 H 0.96998 * 124.85213 * 180.02562 * 24 23 22 26 26 C 1.36446 * 110.29469 * 0.02562 * 24 23 22 27 27 C 1.34484 * 108.85893 * 359.70518 * 26 24 23 28 28 C 1.50699 * 126.83450 * 180.26181 * 27 26 24 29 29 H 1.08998 * 109.47289 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46988 * 300.00007 * 1 2 3 31 31 H 1.09003 * 109.47017 * 60.00074 * 1 2 3 32 32 H 1.08997 * 109.47427 * 239.99793 * 2 1 3 33 33 H 1.09003 * 109.47017 * 119.99926 * 2 1 3 34 34 H 1.08999 * 109.47576 * 305.00482 * 5 3 2 35 35 H 1.09009 * 109.47046 * 65.00457 * 5 3 2 36 36 H 0.97002 * 119.99804 * 0.02562 * 6 5 3 37 37 H 1.08998 * 109.47452 * 300.00365 * 9 7 6 38 38 H 1.09000 * 109.47256 * 60.00923 * 9 7 6 39 39 H 0.97006 * 120.00113 * 180.02562 * 14 13 11 40 40 H 0.97000 * 120.00410 * 95.00338 * 19 3 2 41 41 H 1.08004 * 125.80541 * 0.02562 * 23 22 20 42 42 H 1.07999 * 125.57123 * 179.97438 * 26 24 23 43 43 H 1.08998 * 109.47246 * 270.20564 * 28 27 26 44 44 H 1.08996 * 109.47097 * 30.21547 * 28 27 26 45 45 H 1.09004 * 109.46734 * 150.20776 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1256 6 7 4.0631 2.8167 -0.0060 7 6 5.3858 3.0628 -0.0858 8 8 6.1635 2.1481 -0.2571 9 6 5.8983 4.4746 0.0379 10 16 7.7023 4.4767 -0.1109 11 6 8.0218 6.2004 0.0662 12 1 7.2031 6.8889 0.2147 13 6 9.3257 6.6735 0.0138 14 7 10.3234 5.8343 -0.1677 15 14 9.6644 8.5009 0.2008 16 1 9.8691 8.8219 1.6363 17 1 10.8850 8.8591 -0.5654 18 1 8.5086 9.2744 -0.3194 19 7 1.6525 2.0974 1.2519 20 6 0.4352 2.6644 1.3670 21 8 -0.3417 2.6319 0.4317 22 6 0.0479 3.3281 2.6232 23 6 0.8039 3.4479 3.7565 24 7 0.0874 4.1220 4.6761 25 1 0.3972 4.3407 5.5689 26 6 -1.1366 4.4534 4.1725 27 6 -1.2244 3.9997 2.9096 28 6 -2.3979 4.1482 1.9758 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9954 0.8310 0.6659 35 1 3.8499 1.0376 -1.0960 36 1 3.4411 3.5483 0.1315 37 1 5.4681 5.0880 -0.7537 38 1 5.6131 4.8810 1.0082 39 1 11.2347 6.1648 -0.2040 40 1 2.2719 2.1231 1.9979 41 1 1.8057 3.0673 3.8910 42 1 -1.9073 4.9956 4.7003 43 1 -3.0699 3.2989 2.0988 44 1 -2.9314 5.0702 2.2065 45 1 -2.0409 4.1829 0.9464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498930444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:07 Heat of formation + Delta-G solvation = -41.967030 kcal Electronic energy + Delta-G solvation = -26496.525595 eV Core-core repulsion = 22640.548853 eV Total energy + Delta-G solvation = -3855.976742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.50952 -39.92702 -38.92927 -36.47073 -33.76972 -32.79147 -32.66743 -32.44212 -30.28796 -29.69734 -27.73235 -26.80092 -25.50016 -23.74141 -23.19995 -21.21383 -20.27020 -20.24348 -19.50540 -18.62727 -17.86307 -16.74569 -16.57073 -16.21574 -15.73374 -15.40430 -15.02471 -14.81693 -14.65708 -14.33235 -13.95180 -13.82898 -13.71470 -13.49471 -13.28002 -13.16154 -12.91280 -12.83177 -12.61850 -12.57690 -12.28514 -11.75495 -11.73240 -11.60190 -11.27837 -11.07746 -11.03841 -10.99044 -10.77123 -9.93331 -9.83185 -9.45700 -9.21117 -9.08631 -8.93392 -8.88969 -8.59495 -8.25362 -6.51596 -6.23192 -3.93734 1.47954 2.11251 2.83606 2.96753 3.05244 3.12227 3.20932 3.26944 3.31370 3.39551 3.70653 4.19083 4.42140 4.51845 4.72366 4.77090 4.82184 4.92391 5.08810 5.12002 5.13861 5.21488 5.30780 5.35425 5.50270 5.53393 5.62463 5.64672 5.67614 5.81994 5.83954 5.86326 5.87893 5.97593 6.03658 6.12796 6.28257 6.35018 6.49657 6.57011 6.58891 7.07937 7.40361 7.58206 7.67038 8.19994 8.33831 8.58072 9.22232 10.84209 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011655 B = 0.002505 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.742378 B =11176.983190 C =12950.064433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.137 3.863 4 H 0.096 0.904 5 C 0.113 3.887 6 N -0.739 5.739 7 C 0.532 3.468 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.535 4.535 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.727 5.727 20 C 0.592 3.408 21 O -0.535 6.535 22 C -0.230 4.230 23 C 0.050 3.950 24 N -0.548 5.548 25 H 0.418 0.582 26 C -0.028 4.028 27 C -0.109 4.109 28 C -0.083 4.083 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.399 0.601 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.268 0.732 40 H 0.398 0.602 41 H 0.171 0.829 42 H 0.168 0.832 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.071 -6.817 9.493 27.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.032 3.968 4 H 0.114 0.886 5 C -0.012 4.012 6 N -0.394 5.394 7 C 0.318 3.682 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.380 5.380 20 C 0.381 3.619 21 O -0.413 6.413 22 C -0.241 4.241 23 C -0.087 4.087 24 N -0.142 5.142 25 H 0.255 0.745 26 C -0.155 4.155 27 C -0.115 4.115 28 C -0.140 4.140 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.234 0.766 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.233 0.767 41 H 0.189 0.811 42 H 0.185 0.815 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -24.114 -8.360 8.613 26.936 hybrid contribution -0.376 2.679 1.315 3.008 sum -24.490 -5.681 9.928 27.029 Atomic orbital electron populations 1.21783 0.94521 1.00492 1.03225 1.21882 0.97284 0.95180 1.02659 1.21293 0.93372 0.94295 0.87830 0.88550 1.21598 0.91633 0.84620 1.03311 1.45999 1.07789 1.08933 1.76661 1.20310 0.81389 0.91091 0.75419 1.90707 1.55473 1.46139 1.46780 1.23529 1.06786 0.95234 1.04856 1.85388 0.92003 1.10949 1.94977 1.22867 0.95429 0.92461 1.57607 0.90951 1.24993 0.95081 0.98950 0.94568 1.70019 0.99489 1.34575 1.46209 0.86168 0.78010 0.83028 0.78305 1.20303 1.20732 1.19679 1.45940 1.16780 1.58629 1.16608 1.17334 0.81021 0.77075 0.86510 1.90762 1.51110 1.59430 1.39996 1.20366 0.97135 1.11821 0.94772 1.21971 0.97861 0.99406 0.89501 1.41512 1.13510 1.44408 1.14782 0.74525 1.21600 0.89413 1.08654 0.95852 1.20554 0.95353 1.01291 0.94290 1.20188 0.94006 1.00733 0.99084 0.93695 0.92311 0.92096 0.90744 0.91610 0.91027 0.90036 0.76636 0.89224 0.89328 0.92178 0.76747 0.81139 0.81469 0.91933 0.92446 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.51 37.16 0.32 -1.07 16 2 C -0.13 -1.10 5.61 -26.73 -0.15 -1.25 16 3 C 0.14 1.25 2.42 -67.93 -0.16 1.08 16 4 H 0.10 1.02 7.58 -51.93 -0.39 0.63 16 5 C 0.11 1.21 5.23 -4.04 -0.02 1.19 16 6 N -0.74 -9.37 5.39 -60.29 -0.32 -9.69 16 7 C 0.53 9.57 7.85 -10.98 -0.09 9.49 16 8 O -0.52 -11.36 15.86 5.56 0.09 -11.27 16 9 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 10 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 11 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 12 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 15 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 N -0.73 -6.23 4.46 -54.93 -0.24 -6.47 16 20 C 0.59 6.36 6.38 -12.59 -0.08 6.28 16 21 O -0.54 -7.21 12.45 5.25 0.07 -7.14 16 22 C -0.23 -2.23 6.29 -103.35 -0.65 -2.88 16 23 C 0.05 0.34 11.40 -16.84 -0.19 0.15 16 24 N -0.55 -3.02 5.90 -12.85 -0.08 -3.10 16 25 H 0.42 1.00 8.96 -40.82 -0.37 0.63 16 26 C -0.03 -0.19 11.82 -16.83 -0.20 -0.39 16 27 C -0.11 -1.03 6.35 -102.54 -0.65 -1.68 16 28 C -0.08 -0.75 9.97 36.01 0.36 -0.39 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.65 5.64 -51.93 -0.29 0.36 16 31 H 0.06 0.66 7.84 -51.93 -0.41 0.25 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 36 H 0.40 4.36 8.14 -40.82 -0.33 4.03 16 37 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 38 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 39 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.40 2.77 7.55 -40.82 -0.31 2.46 16 41 H 0.17 0.72 7.45 -52.48 -0.39 0.32 16 42 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.87 6.86 -51.93 -0.36 0.52 16 LS Contribution 389.18 15.07 5.86 5.86 Total: -1.00 -36.87 389.18 -8.85 -45.71 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.62 Total: 4.10 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -1.10 Total: -5.16 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.09 Total: -44.55 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.15 Total: -18.42 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.87 -8.85 -45.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498930444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.747 kcal (2) G-P(sol) polarization free energy of solvation -36.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds