Wall clock time and date at job start Wed Apr 1 2020 01:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 H 1.09001 * 109.46979 * 304.99867 * 3 2 1 5 5 C 1.52994 * 109.47180 * 184.99663 * 3 2 1 6 6 N 1.46504 * 109.47376 * 184.99567 * 5 3 2 7 7 C 1.34780 * 120.00203 * 179.97438 * 6 5 3 8 8 O 1.21278 * 119.99802 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99690 * 180.02562 * 7 6 5 10 10 S 1.81006 * 109.46738 * 180.02562 * 9 7 6 11 11 C 1.76201 * 99.99710 * 180.02562 * 10 9 7 12 12 H 1.08001 * 120.00058 * 359.97438 * 11 10 9 13 13 C 1.38804 * 119.99869 * 180.02562 * 11 10 9 14 14 N 1.31632 * 119.99711 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00135 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46634 * 90.00057 * 15 13 11 17 17 H 1.48501 * 109.47288 * 209.99889 * 15 13 11 18 18 H 1.48491 * 109.47132 * 330.00387 * 15 13 11 19 19 N 1.46504 * 109.46930 * 65.00065 * 3 2 1 20 20 C 1.34777 * 119.99854 * 274.99613 * 19 3 2 21 21 O 1.21633 * 119.99979 * 0.02562 * 20 19 3 22 22 C 1.47264 * 119.99990 * 180.27781 * 20 19 3 23 23 C 1.36762 * 126.94185 * 359.74999 * 22 20 19 24 24 N 1.34664 * 108.39829 * 179.97438 * 23 22 20 25 25 H 0.96998 * 124.85213 * 180.02562 * 24 23 22 26 26 C 1.36446 * 110.29469 * 0.02562 * 24 23 22 27 27 C 1.34484 * 108.85893 * 359.70518 * 26 24 23 28 28 C 1.50699 * 126.83450 * 180.26181 * 27 26 24 29 29 H 1.08998 * 109.47289 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46988 * 300.00007 * 1 2 3 31 31 H 1.09003 * 109.47017 * 60.00074 * 1 2 3 32 32 H 1.08997 * 109.47427 * 239.99793 * 2 1 3 33 33 H 1.09003 * 109.47017 * 119.99926 * 2 1 3 34 34 H 1.08999 * 109.47576 * 305.00482 * 5 3 2 35 35 H 1.09009 * 109.47046 * 65.00457 * 5 3 2 36 36 H 0.97002 * 119.99804 * 0.02562 * 6 5 3 37 37 H 1.08998 * 109.47452 * 300.00365 * 9 7 6 38 38 H 1.09000 * 109.47256 * 60.00923 * 9 7 6 39 39 H 0.97006 * 120.00113 * 180.02562 * 14 13 11 40 40 H 0.97000 * 120.00410 * 95.00338 * 19 3 2 41 41 H 1.08004 * 125.80541 * 0.02562 * 23 22 20 42 42 H 1.07999 * 125.57123 * 179.97438 * 26 24 23 43 43 H 1.08998 * 109.47246 * 270.20564 * 28 27 26 44 44 H 1.08996 * 109.47097 * 30.21547 * 28 27 26 45 45 H 1.09004 * 109.46734 * 150.20776 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1256 6 7 4.0631 2.8167 -0.0060 7 6 5.3858 3.0628 -0.0858 8 8 6.1635 2.1481 -0.2571 9 6 5.8983 4.4746 0.0379 10 16 7.7023 4.4767 -0.1109 11 6 8.0218 6.2004 0.0662 12 1 7.2031 6.8889 0.2147 13 6 9.3257 6.6735 0.0138 14 7 10.3234 5.8343 -0.1677 15 14 9.6644 8.5009 0.2008 16 1 9.8691 8.8219 1.6363 17 1 10.8850 8.8591 -0.5654 18 1 8.5086 9.2744 -0.3194 19 7 1.6525 2.0974 1.2519 20 6 0.4352 2.6644 1.3670 21 8 -0.3417 2.6319 0.4317 22 6 0.0479 3.3281 2.6232 23 6 0.8039 3.4479 3.7565 24 7 0.0874 4.1220 4.6761 25 1 0.3972 4.3407 5.5689 26 6 -1.1366 4.4534 4.1725 27 6 -1.2244 3.9997 2.9096 28 6 -2.3979 4.1482 1.9758 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9954 0.8310 0.6659 35 1 3.8499 1.0376 -1.0960 36 1 3.4411 3.5483 0.1315 37 1 5.4681 5.0880 -0.7537 38 1 5.6131 4.8810 1.0082 39 1 11.2347 6.1648 -0.2040 40 1 2.2719 2.1231 1.9979 41 1 1.8057 3.0673 3.8910 42 1 -1.9073 4.9956 4.7003 43 1 -3.0699 3.2989 2.0988 44 1 -2.9314 5.0702 2.2065 45 1 -2.0409 4.1829 0.9464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498930444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:05 Heat of formation + Delta-G solvation = -68.893423 kcal Electronic energy + Delta-G solvation = -26497.693211 eV Core-core repulsion = 22640.548853 eV Total energy + Delta-G solvation = -3857.144358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.07776 -40.91164 -40.11461 -37.42659 -34.94340 -34.57510 -33.54369 -33.27200 -31.48438 -30.54034 -28.82037 -27.63213 -27.40202 -24.59182 -23.98174 -22.03006 -21.53048 -20.91222 -20.22079 -19.77628 -19.12896 -17.83955 -17.55055 -17.40713 -16.87558 -16.72141 -16.43376 -16.23100 -15.73221 -15.25575 -14.94678 -14.79646 -14.56708 -14.45430 -14.43277 -14.24137 -13.98250 -13.75790 -13.54907 -13.44063 -13.22825 -13.15878 -12.97237 -12.87820 -12.63463 -12.47153 -12.28633 -12.09340 -11.75205 -11.71662 -11.13799 -10.96565 -10.76630 -10.26894 -10.14243 -10.01137 -9.49594 -9.14421 -8.65328 -8.34334 -6.11780 0.85249 1.27371 1.42413 1.47178 1.53794 1.57694 1.62089 2.16984 2.27533 2.33819 2.52290 2.66152 2.99851 3.32678 3.58548 3.94497 4.02863 4.06631 4.09921 4.17787 4.29965 4.32671 4.42292 4.50692 4.52323 4.58638 4.69025 4.74477 4.87794 4.92248 4.95807 4.97584 5.10411 5.19697 5.21483 5.37779 5.39421 5.42485 5.49930 5.60815 5.87379 6.01640 6.20282 6.45473 6.66825 6.74281 7.07268 7.22392 7.44895 8.74744 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011655 B = 0.002505 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.742378 B =11176.983190 C =12950.064433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.149 3.851 4 H 0.082 0.918 5 C 0.117 3.883 6 N -0.712 5.712 7 C 0.537 3.463 8 O -0.561 6.561 9 C -0.131 4.131 10 S -0.147 6.147 11 C -0.546 4.546 12 H 0.081 0.919 13 C 0.014 3.986 14 N -0.911 5.911 15 Si 0.997 3.003 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.260 1.260 19 N -0.717 5.717 20 C 0.590 3.410 21 O -0.572 6.572 22 C -0.267 4.267 23 C 0.063 3.937 24 N -0.536 5.536 25 H 0.435 0.565 26 C -0.016 4.016 27 C -0.148 4.148 28 C -0.077 4.077 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.412 0.588 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.271 0.729 40 H 0.408 0.592 41 H 0.199 0.801 42 H 0.195 0.805 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.095 -5.659 11.397 29.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.043 3.957 4 H 0.101 0.899 5 C -0.007 4.007 6 N -0.366 5.366 7 C 0.323 3.677 8 O -0.439 6.439 9 C -0.282 4.282 10 S 0.081 5.919 11 C -0.694 4.694 12 H 0.099 0.901 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.192 1.192 17 H -0.204 1.204 18 H -0.184 1.184 19 N -0.370 5.370 20 C 0.380 3.620 21 O -0.452 6.452 22 C -0.278 4.278 23 C -0.075 4.075 24 N -0.131 5.131 25 H 0.275 0.725 26 C -0.144 4.144 27 C -0.155 4.155 28 C -0.135 4.135 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.248 0.752 37 H 0.122 0.878 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.245 0.755 41 H 0.216 0.784 42 H 0.212 0.788 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.176 -7.196 10.561 28.234 hybrid contribution -0.197 2.259 0.762 2.392 sum -25.373 -4.937 11.323 28.221 Atomic orbital electron populations 1.21686 0.95422 1.00610 1.01621 1.21860 0.96249 0.94638 1.03809 1.21117 0.91958 0.94838 0.87746 0.89949 1.21702 0.92355 0.83112 1.03531 1.45729 1.06016 1.10474 1.74413 1.19968 0.82641 0.89724 0.75387 1.90702 1.56954 1.46936 1.49296 1.23378 1.01087 0.97171 1.06612 1.85536 0.99235 1.11788 1.95379 1.23200 0.96100 0.92645 1.57479 0.90062 1.26104 0.94758 1.04351 0.93880 1.70179 1.00024 1.37116 1.47393 0.84972 0.78101 0.76333 0.78700 1.19172 1.20372 1.18383 1.45811 1.16454 1.58062 1.16637 1.17585 0.81012 0.76775 0.86625 1.90744 1.52203 1.60931 1.41315 1.20449 0.98309 1.13633 0.95384 1.22328 0.98492 0.98088 0.88590 1.41581 1.12895 1.43247 1.15356 0.72451 1.21963 0.90129 1.07320 0.95024 1.20795 0.95713 1.03208 0.95736 1.20085 0.94284 1.01422 0.97661 0.92617 0.93865 0.93772 0.89663 0.90384 0.90234 0.90303 0.75198 0.87808 0.87067 0.91993 0.75538 0.78427 0.78769 0.92323 0.90794 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.51 71.98 0.61 -1.98 16 2 C -0.13 -1.95 5.61 30.59 0.17 -1.78 16 3 C 0.15 2.53 2.42 44.99 0.11 2.64 16 4 H 0.08 1.71 7.58 -2.39 -0.02 1.69 16 5 C 0.12 2.30 5.23 86.38 0.45 2.75 16 6 N -0.71 -16.74 5.39 -463.05 -2.50 -19.24 16 7 C 0.54 18.73 7.85 87.66 0.69 19.42 16 8 O -0.56 -24.63 15.86 -3.02 -0.05 -24.68 16 9 C -0.13 -5.05 6.16 71.24 0.44 -4.61 16 10 S -0.15 -7.98 20.57 -56.49 -1.16 -9.14 16 11 C -0.55 -30.83 9.50 67.96 0.65 -30.18 16 12 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 13 C 0.01 0.78 5.49 84.86 0.47 1.25 16 14 N -0.91 -55.41 13.22 21.65 0.29 -55.12 16 15 Si 1.00 43.15 29.55 68.60 2.03 45.18 16 16 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 17 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 19 N -0.72 -11.29 4.46 -445.95 -1.99 -13.27 16 20 C 0.59 12.48 6.38 86.62 0.55 13.04 16 21 O -0.57 -15.93 12.45 -4.14 -0.05 -15.99 16 22 C -0.27 -4.91 6.29 -19.04 -0.12 -5.03 16 23 C 0.06 0.70 11.40 83.91 0.96 1.66 16 24 N -0.54 -4.27 5.90 -194.56 -1.15 -5.42 16 25 H 0.44 0.50 8.96 -92.71 -0.83 -0.33 16 26 C -0.02 -0.18 11.82 83.12 0.98 0.80 16 27 C -0.15 -2.70 6.35 -18.51 -0.12 -2.81 16 28 C -0.08 -1.43 9.97 71.24 0.71 -0.71 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.04 0.96 5.64 -2.39 -0.01 0.95 16 31 H 0.04 0.98 7.84 -2.39 -0.02 0.96 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.41 8.02 8.14 -92.71 -0.75 7.27 16 37 H 0.10 3.71 8.14 -2.40 -0.02 3.69 16 38 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 39 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 40 H 0.41 4.71 7.55 -92.71 -0.70 4.01 16 41 H 0.20 0.94 7.45 -2.91 -0.02 0.92 16 42 H 0.20 1.00 8.06 -2.91 -0.02 0.98 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.05 1.23 6.86 -2.39 -0.02 1.21 16 Total: -1.00 -83.08 389.18 0.72 -82.35 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -1.24 Total: 20.87 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 6.55 Total: -5.55 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -5.35 Total: -93.05 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -0.10 Total: -40.67 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -7.98 SS G_CDS: -1.16 Total: -9.14 kcal Total: -83.08 0.72 -82.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498930444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.461 kcal (2) G-P(sol) polarization free energy of solvation -83.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds