Wall clock time and date at job start Wed Apr 1 2020 01:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.52998 * 109.47705 * 174.99884 * 3 2 1 6 6 N 1.46490 * 109.47689 * 175.00086 * 5 3 2 7 7 C 1.34778 * 120.00450 * 180.02562 * 6 5 3 8 8 O 1.21277 * 119.99660 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00409 * 179.97438 * 7 6 5 10 10 S 1.80995 * 109.47419 * 180.02562 * 9 7 6 11 11 C 1.76198 * 100.00007 * 180.02562 * 10 9 7 12 12 H 1.07999 * 120.00079 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99664 * 180.02562 * 11 10 9 14 14 N 1.31627 * 120.00177 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99681 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47141 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46856 * 119.99994 * 15 13 11 18 18 H 1.48495 * 109.47161 * 239.99885 * 15 13 11 19 19 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 20 20 C 1.34775 * 120.00077 * 84.99397 * 19 3 2 21 21 O 1.21621 * 120.00213 * 0.02562 * 20 19 3 22 22 C 1.47269 * 120.00089 * 180.02562 * 20 19 3 23 23 C 1.46692 * 126.93799 * 0.02562 * 22 20 19 24 24 C 1.34484 * 106.32867 * 180.02562 * 23 22 20 25 25 N 1.36446 * 108.85983 * 359.97438 * 24 23 22 26 26 H 0.97000 * 124.85729 * 180.02562 * 25 24 23 27 27 C 1.34663 * 110.29571 * 359.73225 * 25 24 23 28 28 C 1.50697 * 125.80398 * 180.29762 * 27 25 24 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 1.09003 * 109.47087 * 295.00778 * 5 3 2 35 35 H 1.09009 * 109.46938 * 55.00167 * 5 3 2 36 36 H 0.97004 * 120.00027 * 0.02562 * 6 5 3 37 37 H 1.09003 * 109.47071 * 300.00711 * 9 7 6 38 38 H 1.09000 * 109.46745 * 60.00102 * 9 7 6 39 39 H 0.97002 * 119.99498 * 179.97438 * 14 13 11 40 40 H 0.97001 * 120.00250 * 264.99821 * 19 3 2 41 41 H 1.07996 * 126.83742 * 0.03688 * 23 22 20 42 42 H 1.08006 * 125.57324 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.47328 * 270.17016 * 28 27 25 44 44 H 1.09005 * 109.47059 * 30.16957 * 28 27 25 45 45 H 1.09000 * 109.47316 * 150.16069 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5648 1.4443 0.1257 6 7 4.0631 2.8166 0.0060 7 6 5.3858 3.0628 0.0859 8 8 6.1636 2.1480 0.2564 9 6 5.8984 4.4745 -0.0379 10 16 7.7024 4.4765 0.1095 11 6 8.0218 6.2004 -0.0659 12 1 7.2030 6.8891 -0.2130 13 6 9.3258 6.6733 -0.0150 14 7 10.3237 5.8339 0.1648 15 14 9.6645 8.5008 -0.2017 16 1 8.3820 9.2251 -0.3906 17 1 10.3425 9.0058 1.0192 18 1 10.5382 8.7243 -1.3814 19 7 1.6525 2.0975 -1.2517 20 6 0.4352 2.6644 -1.3669 21 8 -0.3414 2.6325 -0.4314 22 6 0.0454 3.3224 -2.6254 23 6 0.8555 3.4488 -3.8417 24 6 0.1013 4.1198 -4.7303 25 7 -1.1015 4.4121 -4.1562 26 1 -1.8224 4.8919 -4.5932 27 6 -1.1472 3.9336 -2.8983 28 6 -2.3129 4.0546 -1.9508 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8499 1.0375 1.0960 35 1 3.9955 0.8310 -0.6660 36 1 3.4411 3.5483 -0.1308 37 1 5.6130 4.8810 -1.0082 38 1 5.4682 5.0879 0.7538 39 1 11.2350 6.1645 0.2000 40 1 2.2720 2.1232 -1.9977 41 1 1.8580 3.0770 -3.9936 42 1 0.3989 4.3841 -5.7343 43 1 -2.2174 4.9738 -1.3728 44 1 -3.2425 4.0780 -2.5196 45 1 -2.3220 3.1996 -1.2749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498931451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:01 Heat of formation + Delta-G solvation = -69.309320 kcal Electronic energy + Delta-G solvation = -26528.845505 eV Core-core repulsion = 22671.683112 eV Total energy + Delta-G solvation = -3857.162392 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.14530 -40.91766 -40.11849 -37.43887 -34.94292 -34.57362 -33.55632 -32.40805 -31.71428 -31.33265 -28.99031 -27.64645 -27.19729 -24.51570 -23.78301 -22.00125 -21.61634 -21.26855 -20.55566 -19.79761 -18.57158 -17.87577 -17.51464 -17.28269 -16.87499 -16.59790 -16.45027 -16.32123 -15.75759 -15.42231 -15.04112 -14.77202 -14.56204 -14.44263 -14.38660 -14.00314 -13.98565 -13.86928 -13.57980 -13.40875 -13.38634 -13.15063 -12.97489 -12.89267 -12.61984 -12.44979 -12.44169 -12.11045 -11.74743 -11.69642 -11.15126 -10.96669 -10.75115 -10.26505 -10.14264 -10.01139 -9.69937 -9.07339 -8.65137 -8.34145 -6.11567 0.81522 1.27613 1.41766 1.47430 1.57694 1.58823 1.61919 2.12257 2.26475 2.30597 2.59075 2.65111 3.00075 3.32917 3.58592 3.94484 3.95419 4.06668 4.09378 4.17783 4.29825 4.33472 4.36155 4.43322 4.52173 4.58538 4.68755 4.71466 4.75747 4.85138 4.97789 4.99580 5.10202 5.11641 5.20701 5.33257 5.39438 5.43089 5.50517 5.62105 5.84655 6.02431 6.20903 6.45140 6.63654 6.74111 7.07500 7.22082 7.43285 8.75274 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011735 B = 0.002506 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.419497 B =11168.475988 C =12928.801813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.148 3.852 4 H 0.086 0.914 5 C 0.116 3.884 6 N -0.712 5.712 7 C 0.537 3.463 8 O -0.561 6.561 9 C -0.131 4.131 10 S -0.146 6.146 11 C -0.545 4.545 12 H 0.081 0.919 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 0.998 3.002 16 H -0.258 1.258 17 H -0.275 1.275 18 H -0.273 1.273 19 N -0.716 5.716 20 C 0.591 3.409 21 O -0.572 6.572 22 C -0.269 4.269 23 C -0.188 4.188 24 C -0.008 4.008 25 N -0.541 5.541 26 H 0.431 0.569 27 C 0.097 3.903 28 C -0.091 4.091 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.411 0.589 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.271 0.729 40 H 0.408 0.592 41 H 0.152 0.848 42 H 0.200 0.800 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.908 -5.089 -9.965 30.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.043 3.957 4 H 0.104 0.896 5 C -0.008 4.008 6 N -0.366 5.366 7 C 0.323 3.677 8 O -0.439 6.439 9 C -0.282 4.282 10 S 0.081 5.919 11 C -0.693 4.693 12 H 0.099 0.901 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.820 3.180 16 H -0.181 1.181 17 H -0.200 1.200 18 H -0.198 1.198 19 N -0.367 5.367 20 C 0.382 3.618 21 O -0.453 6.453 22 C -0.279 4.279 23 C -0.212 4.212 24 C -0.136 4.136 25 N -0.138 5.138 26 H 0.271 0.729 27 C -0.022 4.022 28 C -0.149 4.149 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.248 0.752 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.243 0.757 41 H 0.170 0.830 42 H 0.216 0.784 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -28.079 -6.608 -9.088 30.244 hybrid contribution -0.413 2.369 -0.765 2.524 sum -28.492 -4.239 -9.852 30.444 Atomic orbital electron populations 1.21687 0.95182 1.00687 1.01727 1.21865 0.96519 0.94573 1.03692 1.21139 0.91896 0.94911 0.87729 0.89630 1.21708 0.92537 0.83090 1.03444 1.45725 1.06046 1.10471 1.74381 1.19976 0.82635 0.89760 0.75375 1.90697 1.56929 1.46931 1.49353 1.23375 1.01139 0.97152 1.06563 1.85528 0.99165 1.11855 1.95380 1.23229 0.96103 0.92572 1.57430 0.90083 1.26114 0.94739 1.04406 0.93881 1.70185 1.00016 1.37048 1.47479 0.84913 0.78724 0.76262 0.78091 1.18144 1.19997 1.19817 1.45781 1.16599 1.57796 1.16566 1.17497 0.81137 0.76721 0.86453 1.90727 1.51964 1.61506 1.41104 1.20257 0.97515 1.13983 0.96129 1.22280 1.00699 1.05636 0.92581 1.22248 0.85941 1.04587 1.00827 1.41643 1.15882 1.45101 1.11180 0.72917 1.20549 0.97010 0.97838 0.86844 1.20527 0.93205 1.04110 0.97013 0.93830 0.93430 0.92599 0.89581 0.90722 0.90140 0.90570 0.75231 0.87240 0.87703 0.91985 0.75654 0.82987 0.78364 0.90420 0.89455 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.51 71.98 0.61 -1.91 16 2 C -0.13 -2.04 5.61 30.59 0.17 -1.86 16 3 C 0.15 2.66 2.41 44.99 0.11 2.77 16 4 H 0.09 1.78 7.58 -2.39 -0.02 1.76 16 5 C 0.12 2.44 5.23 86.38 0.45 2.89 16 6 N -0.71 -17.82 5.39 -463.07 -2.49 -20.31 16 7 C 0.54 19.45 7.85 87.66 0.69 20.14 16 8 O -0.56 -25.32 15.86 -3.02 -0.05 -25.36 16 9 C -0.13 -5.20 6.16 71.24 0.44 -4.76 16 10 S -0.15 -8.11 20.57 -56.49 -1.16 -9.27 16 11 C -0.55 -31.18 9.50 67.96 0.65 -30.53 16 12 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 13 C 0.01 0.76 5.49 84.86 0.47 1.23 16 14 N -0.91 -55.88 13.22 21.65 0.29 -55.59 16 15 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 16 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 N -0.72 -12.62 4.47 -445.97 -1.99 -14.61 16 20 C 0.59 12.69 6.37 86.62 0.55 13.25 16 21 O -0.57 -14.85 11.95 -4.10 -0.05 -14.90 16 22 C -0.27 -5.14 6.29 -19.04 -0.12 -5.26 16 23 C -0.19 -2.87 10.56 23.62 0.25 -2.63 16 24 C -0.01 -0.09 11.89 83.12 0.99 0.90 16 25 N -0.54 -5.40 5.90 -182.73 -1.08 -6.48 16 26 H 0.43 1.38 8.96 -92.71 -0.83 0.54 16 27 C 0.10 1.54 7.17 41.78 0.30 1.84 16 28 C -0.09 -1.23 9.87 71.23 0.70 -0.52 16 29 H 0.04 0.94 5.65 -2.39 -0.01 0.93 16 30 H 0.05 1.00 7.84 -2.39 -0.02 0.98 16 31 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.41 8.68 8.14 -92.71 -0.75 7.92 16 37 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 38 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 39 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 40 H 0.41 6.29 7.73 -92.71 -0.72 5.58 16 41 H 0.15 1.95 7.69 -2.91 -0.02 1.92 16 42 H 0.20 0.85 8.06 -2.91 -0.02 0.83 16 43 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 45 H 0.08 1.47 6.47 -2.39 -0.02 1.46 16 Total: -1.00 -80.75 388.68 0.48 -80.27 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: -1.26 Total: 25.07 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 6.26 Total: -4.48 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -5.28 Total: -96.99 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -0.10 Total: -40.26 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.16 Total: -9.27 kcal Total: -80.75 0.48 -80.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498931451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.957 kcal (2) G-P(sol) polarization free energy of solvation -80.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds