Wall clock time and date at job start Tue Mar 31 2020 22:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 N 1.29432 * 124.80208 * 59.69445 * 4 2 1 6 6 C 1.30940 * 117.36100 * 179.83561 * 5 4 2 7 7 C 1.35663 * 114.19214 * 0.44476 * 6 5 4 8 8 C 1.46685 * 126.12785 * 179.74411 * 7 6 5 9 9 O 1.21691 * 119.99505 * 180.02562 * 8 7 6 10 10 N 1.34778 * 120.00430 * 0.02620 * 8 7 6 11 11 C 1.46494 * 120.00154 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47458 * 180.02562 * 11 10 8 13 13 O 1.42903 * 110.64070 * 303.14916 * 12 11 10 14 14 C 1.55154 * 110.72624 * 180.02562 * 12 11 10 15 15 C 1.54902 * 101.58351 * 206.13859 * 14 12 11 16 16 N 1.47420 * 104.83570 * 37.00852 * 15 14 12 17 17 C 1.36943 * 125.65133 * 155.91617 * 16 15 14 18 18 H 1.07997 * 120.00217 * 179.97438 * 17 16 15 19 19 C 1.38811 * 119.99495 * 359.97438 * 17 16 15 20 20 N 1.31619 * 120.00215 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99820 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47381 * 89.99933 * 21 19 17 23 23 H 1.48500 * 109.46981 * 209.99947 * 21 19 17 24 24 H 1.48506 * 109.46957 * 329.99709 * 21 19 17 25 25 C 1.47017 * 108.70403 * 335.87254 * 16 15 14 26 26 S 1.70949 * 124.80702 * 239.99595 * 4 2 1 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 34 34 H 1.08006 * 122.90443 * 180.21179 * 6 5 4 35 35 H 0.96997 * 119.99494 * 0.02562 * 10 8 7 36 36 H 1.09008 * 109.47374 * 300.00612 * 11 10 8 37 37 H 1.09005 * 109.46984 * 60.00118 * 11 10 8 38 38 H 0.96699 * 114.00190 * 59.29644 * 13 12 11 39 39 H 1.09003 * 111.00269 * 324.21192 * 14 12 11 40 40 H 1.08999 * 111.00158 * 88.02323 * 14 12 11 41 41 H 1.09007 * 110.36746 * 155.85422 * 15 14 12 42 42 H 1.09002 * 110.36567 * 278.06037 * 15 14 12 43 43 H 0.97007 * 120.00015 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.88287 * 241.64530 * 25 16 15 45 45 H 1.09002 * 109.88387 * 120.46971 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7729 -0.3533 -2.4472 6 6 2.2891 -1.0760 -3.4095 7 6 3.0321 -2.1261 -2.9788 8 6 3.7220 -3.1034 -3.8277 9 8 4.3605 -4.0065 -3.3202 10 7 3.6486 -3.0012 -5.1695 11 6 4.3380 -3.9770 -6.0173 12 6 4.0960 -3.6353 -7.4888 13 8 2.6961 -3.5947 -7.7729 14 6 4.8142 -4.6528 -8.4141 15 6 5.0352 -3.8078 -9.6934 16 7 5.3437 -2.4526 -9.2020 17 6 6.0465 -1.4965 -9.8856 18 1 6.2199 -0.5296 -9.4368 19 6 6.5359 -1.7701 -11.1554 20 7 6.3249 -2.9487 -11.7022 21 14 7.4951 -0.4662 -12.0877 22 1 8.9406 -0.5956 -11.7732 23 1 7.2878 -0.6479 -13.5469 24 1 7.0194 0.8815 -11.6841 25 6 4.7712 -2.2971 -7.8568 26 16 3.0193 -2.1061 -1.2169 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 2.1335 -0.8572 -4.4556 35 1 3.1399 -2.2811 -5.5739 36 1 5.4076 -3.9478 -5.8090 37 1 3.9543 -4.9755 -5.8079 38 1 2.2067 -2.9471 -7.2473 39 1 5.7653 -4.9677 -7.9847 40 1 4.1764 -5.5128 -8.6185 41 1 5.8726 -4.2026 -10.2689 42 1 4.1304 -3.7959 -10.3011 43 1 6.6673 -3.1400 -12.5894 44 1 4.0311 -1.4969 -7.8592 45 1 5.5618 -2.0718 -7.1411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500768875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:40 Heat of formation + Delta-G solvation = -18.732581 kcal Electronic energy + Delta-G solvation = -26829.083041 eV Core-core repulsion = 22974.113821 eV Total energy + Delta-G solvation = -3854.969220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 21.69 seconds Orbital eigenvalues (eV) -40.55398 -39.64667 -38.43453 -35.85354 -35.24034 -34.25966 -32.18356 -30.80246 -29.47303 -28.08312 -27.61610 -26.41813 -25.60013 -23.72053 -22.90615 -21.51313 -20.35189 -20.03452 -19.51882 -18.53757 -17.61257 -16.98704 -16.44666 -15.77571 -15.64738 -15.41412 -14.89356 -14.76307 -14.71610 -14.36997 -14.17973 -13.93830 -13.78264 -13.39722 -13.16302 -12.96841 -12.56982 -12.39116 -12.14947 -12.14279 -11.91316 -11.68001 -11.62259 -11.48425 -11.07330 -10.89606 -10.82663 -10.64947 -10.34437 -10.17090 -9.99661 -9.80623 -9.78683 -9.75237 -9.48087 -9.35286 -9.14172 -8.67975 -6.89119 -5.69136 -3.11698 -0.07618 0.81031 1.34001 2.15422 2.97237 3.01500 3.37882 3.42654 3.44861 3.59462 4.29909 4.37464 4.42728 4.46223 4.58491 4.59333 4.78374 4.89834 4.94978 5.11938 5.21232 5.30858 5.35908 5.39149 5.46176 5.47046 5.57843 5.62036 5.77956 5.80235 5.87333 5.90669 6.15338 6.20342 6.37064 6.45829 6.55256 6.57890 7.18303 7.27087 7.53004 7.57741 7.80395 7.85268 7.94289 8.31254 9.17259 9.77621 10.41561 11.34592 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.002340 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.383457 B =11962.972256 C =12857.764451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.019 4.019 3 C -0.141 4.141 4 C 0.047 3.953 5 N -0.472 5.472 6 C 0.096 3.904 7 C -0.296 4.296 8 C 0.595 3.405 9 O -0.535 6.535 10 N -0.713 5.713 11 C 0.106 3.894 12 C 0.105 3.895 13 O -0.541 6.541 14 C -0.128 4.128 15 C 0.156 3.844 16 N -0.599 5.599 17 C -0.226 4.226 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.920 5.920 21 Si 0.916 3.084 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.116 3.884 26 S 0.225 5.775 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.181 0.819 35 H 0.398 0.602 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.362 0.638 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.019 0.981 43 H 0.253 0.747 44 H 0.023 0.977 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.022 3.437 24.108 26.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.041 4.041 3 C -0.200 4.200 4 C -0.227 4.227 5 N -0.186 5.186 6 C -0.063 4.063 7 C -0.421 4.421 8 C 0.380 3.620 9 O -0.413 6.413 10 N -0.365 5.365 11 C -0.018 4.018 12 C 0.063 3.937 13 O -0.345 6.345 14 C -0.167 4.167 15 C 0.031 3.969 16 N -0.326 5.326 17 C -0.354 4.354 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.568 5.568 21 Si 0.746 3.254 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.207 1.207 25 C -0.011 4.011 26 S 0.484 5.516 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.198 0.802 35 H 0.233 0.767 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.208 0.792 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.126 0.874 42 H 0.037 0.963 43 H 0.064 0.936 44 H 0.041 0.959 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -10.149 2.146 24.561 26.662 hybrid contribution -0.081 1.712 -1.352 2.183 sum -10.230 3.857 23.209 25.655 Atomic orbital electron populations 1.21816 0.92497 1.02508 1.03116 1.19909 0.97197 0.96292 0.90693 1.21819 1.01307 0.93747 1.03120 1.27622 0.99687 0.98167 0.97255 1.66032 1.23593 1.30513 0.98456 1.22204 0.93761 0.90020 1.00296 1.25753 1.12478 1.05606 0.98260 1.16660 0.80053 0.83448 0.81822 1.90857 1.42214 1.34371 1.73843 1.45705 1.53556 1.31977 1.05233 1.22178 0.98222 0.92196 0.89175 1.22594 0.81696 0.98297 0.91080 1.86658 1.18889 1.62728 1.66239 1.23055 0.98317 0.97155 0.98131 1.21943 1.01006 0.83056 0.90892 1.44409 1.62601 1.12590 1.12956 1.19052 1.25867 0.93296 0.97189 0.90523 1.24802 1.01146 0.97399 0.97193 1.69789 1.50274 1.20515 1.16256 0.86056 0.79732 0.80458 0.79129 1.21525 1.21581 1.20742 1.21932 0.95588 0.93609 0.89926 1.84084 1.43743 1.23527 1.00211 0.92436 0.91434 0.91230 0.89105 0.92386 0.91230 0.91417 0.80170 0.76684 0.89880 0.90343 0.79158 0.90500 0.90982 0.87377 0.96334 0.93614 0.95913 0.95133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.17 37.16 0.34 -0.44 16 2 C -0.02 -0.11 3.35 -91.77 -0.31 -0.42 16 3 C -0.14 -0.81 9.17 37.16 0.34 -0.47 16 4 C 0.05 0.42 5.90 -13.29 -0.08 0.34 16 5 N -0.47 -4.85 10.49 -11.50 -0.12 -4.97 16 6 C 0.10 0.96 10.93 -18.85 -0.21 0.75 16 7 C -0.30 -3.37 6.48 -37.09 -0.24 -3.61 16 8 C 0.60 8.08 7.79 -12.85 -0.10 7.98 16 9 O -0.53 -9.06 16.97 5.20 0.09 -8.97 16 10 N -0.71 -8.69 5.18 -61.62 -0.32 -9.01 16 11 C 0.11 1.52 4.74 -4.05 -0.02 1.50 16 12 C 0.10 1.75 0.92 -88.78 -0.08 1.67 16 13 O -0.54 -8.69 13.10 -35.23 -0.46 -9.15 16 14 C -0.13 -2.40 6.26 -24.59 -0.15 -2.56 16 15 C 0.16 3.78 5.88 -2.54 -0.01 3.77 16 16 N -0.60 -15.16 3.39 -170.08 -0.58 -15.74 16 17 C -0.23 -6.25 10.27 -15.06 -0.15 -6.40 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -26.71 10.09 55.49 0.56 -26.15 16 21 Si 0.92 21.97 29.55 -169.99 -5.02 16.95 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.12 2.30 6.30 -3.06 -0.02 2.28 16 26 S 0.22 2.16 23.00 -107.50 -2.47 -0.31 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.40 8.12 -51.93 -0.42 -0.02 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.18 1.36 7.15 -52.48 -0.38 0.99 16 35 H 0.40 3.90 5.98 -40.82 -0.24 3.66 16 36 H 0.08 1.27 8.06 -51.92 -0.42 0.85 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.36 4.22 7.78 45.56 0.35 4.58 16 39 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.11 2.93 5.87 -51.93 -0.31 2.62 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.02 0.44 8.07 -51.93 -0.42 0.02 16 45 H 0.03 0.61 7.76 -51.93 -0.40 0.20 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -33.99 382.01 -9.36 -43.35 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.00 Total: 4.22 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -0.79 Total: 4.03 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.46 Total: -55.87 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.37 Total: -18.12 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.47 Total: -0.31 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.99 -9.36 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500768875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.620 kcal (2) G-P(sol) polarization free energy of solvation -33.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.69 seconds