Wall clock time and date at job start Tue Mar 31 2020 22:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 N 1.29432 * 124.80208 * 59.69445 * 4 2 1 6 6 C 1.30940 * 117.36100 * 179.83561 * 5 4 2 7 7 C 1.35663 * 114.19214 * 0.44476 * 6 5 4 8 8 C 1.46685 * 126.12785 * 179.74411 * 7 6 5 9 9 O 1.21691 * 119.99505 * 180.02562 * 8 7 6 10 10 N 1.34778 * 120.00430 * 0.02620 * 8 7 6 11 11 C 1.46494 * 120.00154 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47458 * 180.02562 * 11 10 8 13 13 O 1.42903 * 110.64070 * 303.14916 * 12 11 10 14 14 C 1.55154 * 110.72624 * 180.02562 * 12 11 10 15 15 C 1.54902 * 101.58351 * 206.13859 * 14 12 11 16 16 N 1.47420 * 104.83570 * 37.00852 * 15 14 12 17 17 C 1.36943 * 125.65133 * 155.91617 * 16 15 14 18 18 H 1.07997 * 120.00217 * 179.97438 * 17 16 15 19 19 C 1.38811 * 119.99495 * 359.97438 * 17 16 15 20 20 N 1.31619 * 120.00215 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99820 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47381 * 89.99933 * 21 19 17 23 23 H 1.48500 * 109.46981 * 209.99947 * 21 19 17 24 24 H 1.48506 * 109.46957 * 329.99709 * 21 19 17 25 25 C 1.47017 * 108.70403 * 335.87254 * 16 15 14 26 26 S 1.70949 * 124.80702 * 239.99595 * 4 2 1 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 34 34 H 1.08006 * 122.90443 * 180.21179 * 6 5 4 35 35 H 0.96997 * 119.99494 * 0.02562 * 10 8 7 36 36 H 1.09008 * 109.47374 * 300.00612 * 11 10 8 37 37 H 1.09005 * 109.46984 * 60.00118 * 11 10 8 38 38 H 0.96699 * 114.00190 * 59.29644 * 13 12 11 39 39 H 1.09003 * 111.00269 * 324.21192 * 14 12 11 40 40 H 1.08999 * 111.00158 * 88.02323 * 14 12 11 41 41 H 1.09007 * 110.36746 * 155.85422 * 15 14 12 42 42 H 1.09002 * 110.36567 * 278.06037 * 15 14 12 43 43 H 0.97007 * 120.00015 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.88287 * 241.64530 * 25 16 15 45 45 H 1.09002 * 109.88387 * 120.46971 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7729 -0.3533 -2.4472 6 6 2.2891 -1.0760 -3.4095 7 6 3.0321 -2.1261 -2.9788 8 6 3.7220 -3.1034 -3.8277 9 8 4.3605 -4.0065 -3.3202 10 7 3.6486 -3.0012 -5.1695 11 6 4.3380 -3.9770 -6.0173 12 6 4.0960 -3.6353 -7.4888 13 8 2.6961 -3.5947 -7.7729 14 6 4.8142 -4.6528 -8.4141 15 6 5.0352 -3.8078 -9.6934 16 7 5.3437 -2.4526 -9.2020 17 6 6.0465 -1.4965 -9.8856 18 1 6.2199 -0.5296 -9.4368 19 6 6.5359 -1.7701 -11.1554 20 7 6.3249 -2.9487 -11.7022 21 14 7.4951 -0.4662 -12.0877 22 1 8.9406 -0.5956 -11.7732 23 1 7.2878 -0.6479 -13.5469 24 1 7.0194 0.8815 -11.6841 25 6 4.7712 -2.2971 -7.8568 26 16 3.0193 -2.1061 -1.2169 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 2.1335 -0.8572 -4.4556 35 1 3.1399 -2.2811 -5.5739 36 1 5.4076 -3.9478 -5.8090 37 1 3.9543 -4.9755 -5.8079 38 1 2.2067 -2.9471 -7.2473 39 1 5.7653 -4.9677 -7.9847 40 1 4.1764 -5.5128 -8.6185 41 1 5.8726 -4.2026 -10.2689 42 1 4.1304 -3.7959 -10.3011 43 1 6.6673 -3.1400 -12.5894 44 1 4.0311 -1.4969 -7.8592 45 1 5.5618 -2.0718 -7.1411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500768875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:39 Heat of formation + Delta-G solvation = -44.110594 kcal Electronic energy + Delta-G solvation = -26830.183515 eV Core-core repulsion = 22974.113821 eV Total energy + Delta-G solvation = -3856.069694 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.48345 -40.68007 -39.77467 -36.88014 -36.40342 -35.41704 -34.03375 -31.89903 -31.08122 -29.50901 -28.04313 -27.54929 -26.96158 -25.27883 -23.71132 -22.55947 -21.95963 -21.42392 -20.53486 -19.26160 -18.92336 -18.56800 -17.63512 -16.86992 -16.76462 -16.68323 -16.17175 -15.84812 -15.66914 -15.47037 -15.36121 -15.17884 -14.81111 -14.67594 -14.45572 -13.95968 -13.87788 -13.66711 -13.31128 -12.98200 -12.95208 -12.77108 -12.67688 -12.65324 -12.40246 -12.13771 -12.08267 -12.04304 -11.96680 -11.84113 -11.69008 -11.42641 -10.96422 -10.75123 -10.63013 -10.61496 -10.33068 -9.97099 -8.91820 -7.78919 -5.23966 -0.85577 0.05945 0.59771 1.32774 1.46312 1.48159 1.56662 1.98895 2.04114 2.47775 2.95754 3.12041 3.30180 3.38876 3.62339 3.69153 3.74348 3.88517 3.94164 4.04737 4.09883 4.12808 4.45433 4.46612 4.58774 4.63652 4.77346 4.81339 4.82906 4.90651 4.95369 4.96848 4.97739 5.04683 5.10292 5.16449 5.35024 5.40528 5.45039 5.60551 5.78707 6.20914 6.28351 6.52648 6.73913 6.93526 7.08280 7.75251 8.38616 9.23019 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.002340 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.383457 B =11962.972256 C =12857.764451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.023 4.023 3 C -0.138 4.138 4 C 0.061 3.939 5 N -0.493 5.493 6 C 0.109 3.891 7 C -0.326 4.326 8 C 0.599 3.401 9 O -0.574 6.574 10 N -0.703 5.703 11 C 0.120 3.880 12 C 0.126 3.874 13 O -0.552 6.552 14 C -0.120 4.120 15 C 0.159 3.841 16 N -0.622 5.622 17 C -0.240 4.240 18 H 0.082 0.918 19 C -0.068 4.068 20 N -0.948 5.948 21 Si 0.981 3.019 22 H -0.285 1.285 23 H -0.295 1.295 24 H -0.270 1.270 25 C 0.112 3.888 26 S 0.226 5.774 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.112 0.888 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.202 0.798 35 H 0.411 0.589 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.384 0.616 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.075 0.925 42 H -0.015 1.015 43 H 0.247 0.753 44 H 0.036 0.964 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.998 4.754 26.301 29.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.045 4.045 3 C -0.197 4.197 4 C -0.213 4.213 5 N -0.207 5.207 6 C -0.051 4.051 7 C -0.450 4.450 8 C 0.386 3.614 9 O -0.455 6.455 10 N -0.355 5.355 11 C -0.004 4.004 12 C 0.085 3.915 13 O -0.359 6.359 14 C -0.159 4.159 15 C 0.034 3.966 16 N -0.349 5.349 17 C -0.369 4.369 18 H 0.100 0.900 19 C -0.260 4.260 20 N -0.598 5.598 21 Si 0.809 3.191 22 H -0.212 1.212 23 H -0.221 1.221 24 H -0.195 1.195 25 C -0.014 4.014 26 S 0.487 5.513 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.130 0.870 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.219 0.781 35 H 0.248 0.752 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.233 0.767 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.003 0.997 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.158 3.496 26.791 29.232 hybrid contribution 0.132 1.380 -1.954 2.396 sum -11.026 4.876 24.837 27.608 Atomic orbital electron populations 1.21805 0.91814 1.02536 1.03482 1.20169 0.97682 0.96479 0.90185 1.21811 1.01056 0.93391 1.03484 1.28208 0.97985 0.97268 0.97827 1.66135 1.24498 1.31034 0.99016 1.22562 0.92234 0.88951 1.01339 1.25557 1.14277 1.06283 0.98894 1.16865 0.79409 0.83178 0.81993 1.90835 1.44081 1.36086 1.74515 1.45525 1.53250 1.31880 1.04857 1.21865 0.98081 0.92915 0.87537 1.22206 0.81785 0.95583 0.91962 1.86624 1.18374 1.63672 1.67195 1.22904 0.99739 0.97268 0.95941 1.21659 0.98028 0.83978 0.92926 1.44694 1.62812 1.12559 1.14803 1.19443 1.25719 0.94054 0.97644 0.89994 1.25659 1.02594 0.99456 0.98323 1.70048 1.51385 1.22213 1.16157 0.85039 0.78294 0.78502 0.77241 1.21151 1.22105 1.19465 1.22148 0.95993 0.95829 0.87429 1.84067 1.43936 1.23943 0.99375 0.92580 0.89331 0.92618 0.86968 0.92760 0.92662 0.89280 0.78118 0.75171 0.90596 0.89783 0.76716 0.89398 0.89432 0.90672 0.99654 0.94277 0.94654 0.94579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.17 71.98 0.66 -0.54 16 2 C -0.02 -0.23 3.35 -11.54 -0.04 -0.27 16 3 C -0.14 -1.29 9.17 71.98 0.66 -0.63 16 4 C 0.06 0.97 5.90 88.46 0.52 1.49 16 5 N -0.49 -9.26 10.49 -190.30 -2.00 -11.25 16 6 C 0.11 1.97 10.93 84.23 0.92 2.89 16 7 C -0.33 -6.95 6.48 23.88 0.15 -6.80 16 8 C 0.60 15.51 7.79 86.45 0.67 16.18 16 9 O -0.57 -19.08 16.97 -4.32 -0.07 -19.16 16 10 N -0.70 -15.76 5.18 -467.08 -2.42 -18.18 16 11 C 0.12 3.22 4.74 86.38 0.41 3.63 16 12 C 0.13 4.02 0.92 -9.60 -0.01 4.01 16 13 O -0.55 -16.57 13.10 -148.98 -1.95 -18.52 16 14 C -0.12 -4.44 6.26 31.98 0.20 -4.24 16 15 C 0.16 7.93 5.88 86.85 0.51 8.44 16 16 N -0.62 -31.69 3.39 -692.00 -2.35 -34.04 16 17 C -0.24 -13.35 10.27 84.03 0.86 -12.49 16 18 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 19 C -0.07 -3.84 5.49 84.86 0.47 -3.38 16 20 N -0.95 -56.77 10.09 21.65 0.22 -56.55 16 21 Si 0.98 45.59 29.55 68.60 2.03 47.62 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 C 0.11 4.29 6.30 86.73 0.55 4.83 16 26 S 0.23 4.06 23.00 -56.49 -1.30 2.76 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.09 0.41 8.14 -2.39 -0.02 0.40 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 30 H 0.11 0.66 8.12 -2.39 -0.02 0.64 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.20 2.52 7.15 -2.91 -0.02 2.49 16 35 H 0.41 7.00 5.98 -92.71 -0.55 6.45 16 36 H 0.08 2.20 8.06 -2.38 -0.02 2.18 16 37 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.38 7.85 7.78 -74.06 -0.58 7.27 16 39 H 0.09 3.06 8.05 -2.39 -0.02 3.04 16 40 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 41 H 0.08 4.25 5.87 -2.38 -0.01 4.24 16 42 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 43 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 44 H 0.04 1.28 8.07 -2.39 -0.02 1.27 16 45 H 0.04 1.37 7.76 -2.39 -0.02 1.35 16 Total: -1.00 -74.92 382.01 -1.41 -76.34 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -0.11 Total: 17.83 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 6.54 Total: 13.15 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -6.55 Total: -120.03 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -2.02 Total: -37.67 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.30 Total: 2.76 kcal Total: -74.92 -1.41 -76.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500768875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.225 kcal (2) G-P(sol) polarization free energy of solvation -74.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds