Wall clock time and date at job start Tue Mar 31 2020 22:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47404 * 2 1 4 4 C 1.50699 * 109.47267 * 120.00013 * 2 1 3 5 5 N 1.28649 * 124.72196 * 120.00108 * 4 2 1 6 6 C 1.33557 * 115.76851 * 179.97438 * 5 4 2 7 7 C 1.47269 * 123.14290 * 179.97438 * 6 5 4 8 8 O 1.21628 * 119.99878 * 172.31760 * 7 6 5 9 9 N 1.34780 * 119.99802 * 352.31671 * 7 6 5 10 10 C 1.47142 * 120.98063 * 172.34232 * 9 7 6 11 11 C 1.53301 * 108.38437 * 129.48752 * 10 9 7 12 12 O 1.42960 * 109.22226 * 52.30232 * 11 10 9 13 13 C 1.42961 * 114.16691 * 297.42457 * 12 11 10 14 14 H 1.09000 * 109.54964 * 302.62454 * 13 12 11 15 15 C 1.53008 * 109.51197 * 182.50394 * 13 12 11 16 16 N 1.46502 * 109.47053 * 65.24895 * 15 13 12 17 17 C 1.36940 * 119.99819 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99741 * 0.02562 * 17 16 15 19 19 C 1.38808 * 119.99905 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99917 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99922 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47261 * 90.00130 * 21 19 17 23 23 H 1.48508 * 109.46764 * 209.99777 * 21 19 17 24 24 H 1.48495 * 109.47188 * 329.99737 * 21 19 17 25 25 C 1.47154 * 120.98091 * 352.36984 * 9 7 6 26 26 C 1.35208 * 113.71648 * 0.24746 * 6 5 4 27 27 S 1.70768 * 124.72142 * 299.99907 * 4 2 1 28 28 H 1.09000 * 109.47073 * 300.00107 * 1 2 3 29 29 H 1.09000 * 109.47460 * 59.99540 * 1 2 3 30 30 H 1.08992 * 109.47337 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47013 * 240.00395 * 2 1 3 32 32 H 1.09001 * 109.47381 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46683 * 300.00512 * 3 2 1 34 34 H 1.09000 * 109.47093 * 59.99905 * 3 2 1 35 35 H 1.08993 * 109.68673 * 249.21276 * 10 9 7 36 36 H 1.09003 * 109.68648 * 9.73358 * 10 9 7 37 37 H 1.09003 * 109.51555 * 172.22807 * 11 10 9 38 38 H 1.09002 * 109.51235 * 292.37899 * 11 10 9 39 39 H 1.09000 * 109.46741 * 305.24749 * 15 13 12 40 40 H 1.08995 * 109.46760 * 185.24975 * 15 13 12 41 41 H 0.96996 * 119.99776 * 359.97438 * 16 15 13 42 42 H 0.97006 * 119.99989 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.68277 * 110.78975 * 25 9 7 44 44 H 1.08998 * 109.68636 * 350.23346 * 25 9 7 45 45 H 1.08002 * 125.58631 * 179.75459 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 2.7751 -1.7608 1.2182 6 6 3.1173 -2.2438 2.4154 7 6 3.9612 -3.4379 2.5906 8 8 4.3535 -3.7480 3.6993 9 7 4.2986 -4.1872 1.5223 10 6 5.2724 -5.2837 1.6433 11 6 4.6616 -6.5438 1.0196 12 8 4.2065 -6.2419 -0.3016 13 6 3.1702 -5.2584 -0.3531 14 1 2.3233 -5.5890 0.2482 15 6 2.7223 -5.0635 -1.8031 16 7 2.1026 -6.2973 -2.2928 17 6 1.6216 -6.3604 -3.5734 18 1 1.6995 -5.5007 -4.2225 19 6 1.0350 -7.5297 -4.0376 20 7 0.5722 -7.5902 -5.2683 21 14 0.9009 -9.0168 -2.9152 22 1 -0.3833 -8.9616 -2.1715 23 1 0.9482 -10.2577 -3.7298 24 1 2.0312 -9.0136 -1.9521 25 6 3.7046 -3.9325 0.2003 26 6 2.6118 -1.5374 3.4516 27 16 1.6949 -0.2332 2.8350 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 6.1892 -5.0205 1.1159 36 1 5.4931 -5.4643 2.6954 37 1 5.4155 -7.3298 0.9742 38 1 3.8207 -6.8795 1.6265 39 1 3.5869 -4.8210 -2.4210 40 1 1.9997 -4.2490 -1.8538 41 1 2.0330 -7.0695 -1.7100 42 1 0.1619 -8.4072 -5.5926 43 1 4.4635 -3.5331 -0.4724 44 1 2.8866 -3.2186 0.2968 45 1 2.7639 -1.7598 4.4975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502080915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:07 Heat of formation + Delta-G solvation = -7.258045 kcal Electronic energy + Delta-G solvation = -27810.721274 eV Core-core repulsion = 23956.249627 eV Total energy + Delta-G solvation = -3854.471647 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.09397 -39.50615 -38.25748 -35.86764 -35.01696 -34.58034 -32.17268 -30.66350 -30.37785 -28.51856 -27.57848 -26.15959 -25.70673 -23.90631 -22.75338 -21.75245 -21.05474 -20.64377 -19.41515 -18.51537 -17.59876 -16.76438 -16.42608 -16.31355 -15.87019 -15.74510 -15.10449 -14.73703 -14.64423 -14.45447 -14.35968 -14.10017 -13.61789 -13.44351 -13.13936 -13.06280 -12.74621 -12.59728 -12.53260 -12.47710 -12.18496 -11.98274 -11.73742 -11.60966 -11.33119 -11.14624 -11.03645 -10.83214 -10.58547 -10.30856 -10.13538 -10.01436 -9.95147 -9.55872 -9.43071 -9.24461 -8.86716 -8.53481 -7.18195 -5.72557 -3.07213 0.19268 0.87607 1.27751 1.64258 2.78137 3.08382 3.42540 3.49078 3.49814 3.51784 3.93795 4.27928 4.50961 4.64884 4.66354 4.67887 4.78639 4.89783 4.97826 5.04244 5.13811 5.20190 5.22996 5.30570 5.37283 5.39601 5.44704 5.53873 5.57992 5.65470 5.69888 5.77997 5.80310 5.86150 5.86534 5.89303 6.14102 6.41121 6.49914 6.65039 7.04164 7.23129 7.41449 7.91007 8.02876 8.46368 9.25886 9.98601 10.19156 11.45812 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010866 B = 0.003610 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.206682 B = 7754.486714 C = 9639.804628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.024 4.024 3 C -0.147 4.147 4 C 0.037 3.963 5 N -0.437 5.437 6 C 0.013 3.987 7 C 0.596 3.404 8 O -0.541 6.541 9 N -0.595 5.595 10 C 0.076 3.924 11 C 0.047 3.953 12 O -0.364 6.364 13 C 0.067 3.933 14 H 0.058 0.942 15 C 0.171 3.829 16 N -0.751 5.751 17 C -0.242 4.242 18 H 0.091 0.909 19 C 0.005 3.995 20 N -0.935 5.935 21 Si 0.881 3.119 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.274 1.274 25 C 0.060 3.940 26 C -0.229 4.229 27 S 0.215 5.785 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.052 0.948 39 H 0.037 0.963 40 H 0.044 0.956 41 H 0.364 0.636 42 H 0.259 0.741 43 H 0.077 0.923 44 H 0.144 0.856 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.753 19.289 18.410 26.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.046 4.046 3 C -0.206 4.206 4 C -0.242 4.242 5 N -0.152 5.152 6 C -0.121 4.121 7 C 0.382 3.618 8 O -0.419 6.419 9 N -0.327 5.327 10 C -0.046 4.046 11 C -0.031 4.031 12 O -0.282 6.282 13 C 0.008 3.992 14 H 0.076 0.924 15 C 0.043 3.957 16 N -0.397 5.397 17 C -0.371 4.371 18 H 0.109 0.891 19 C -0.190 4.190 20 N -0.583 5.583 21 Si 0.712 3.288 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.200 1.200 25 C -0.063 4.063 26 C -0.371 4.371 27 S 0.474 5.526 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.196 0.804 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.161 0.839 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 3.595 19.667 18.541 27.267 hybrid contribution 0.485 -2.031 1.051 2.338 sum 4.080 17.636 19.593 26.675 Atomic orbital electron populations 1.21956 0.92748 1.03285 1.02831 1.19922 0.96441 0.95473 0.92746 1.21940 1.01852 0.93924 1.02858 1.27485 1.00167 0.96488 1.00048 1.66976 1.13274 1.09883 1.25066 1.20339 1.04280 1.00004 0.87492 1.17114 0.79357 0.81342 0.83992 1.90788 1.55839 1.71168 1.24096 1.47931 1.42710 1.32357 1.09678 1.22400 0.91757 0.87134 1.03312 1.22921 0.99227 0.95775 0.85168 1.88123 1.54935 1.59563 1.25565 1.22926 0.89482 0.87451 0.99312 0.92377 1.20562 0.95928 0.90542 0.88680 1.42600 1.72348 1.11057 1.13658 1.19052 1.30552 0.99557 0.87986 0.89149 1.24630 1.00748 0.97526 0.96118 1.69702 1.45513 1.27675 1.15450 0.86571 0.77923 0.83762 0.80590 1.21212 1.21727 1.19976 1.23356 1.01716 0.99048 0.82196 1.26588 1.03985 1.00676 1.05869 1.82779 1.44837 1.25041 0.99991 0.92353 0.90703 0.91506 0.87313 0.91909 0.90779 0.92317 0.90351 0.88296 0.87724 0.92988 0.94487 0.93834 0.80353 0.93116 0.90490 0.83908 0.79416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.09 37.15 0.34 -0.63 16 2 C -0.02 -0.18 3.34 -91.77 -0.31 -0.48 16 3 C -0.15 -0.82 9.09 37.16 0.34 -0.48 16 4 C 0.04 0.34 6.00 -13.61 -0.08 0.26 16 5 N -0.44 -5.19 6.83 -8.51 -0.06 -5.25 16 6 C 0.01 0.17 6.47 -84.53 -0.55 -0.38 16 7 C 0.60 8.80 7.66 -12.59 -0.10 8.71 16 8 O -0.54 -8.95 16.21 5.25 0.09 -8.86 16 9 N -0.59 -8.50 3.02 -173.61 -0.52 -9.03 16 10 C 0.08 0.98 6.66 -3.54 -0.02 0.96 16 11 C 0.05 0.64 6.99 37.31 0.26 0.91 16 12 O -0.36 -6.45 10.33 -35.23 -0.36 -6.81 16 13 C 0.07 1.15 2.81 -26.57 -0.07 1.07 16 14 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 15 C 0.17 3.41 5.93 -4.04 -0.02 3.39 16 16 N -0.75 -18.66 5.36 -59.91 -0.32 -18.98 16 17 C -0.24 -7.00 10.47 -15.06 -0.16 -7.15 16 18 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 20 N -0.94 -29.76 13.97 55.49 0.78 -28.99 16 21 Si 0.88 22.81 27.74 -169.99 -4.71 18.09 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 24 H -0.27 -6.84 6.52 56.52 0.37 -6.47 16 25 C 0.06 0.87 5.41 -3.53 -0.02 0.85 16 26 C -0.23 -2.32 10.62 29.65 0.31 -2.00 16 27 S 0.22 1.59 22.22 -107.50 -2.39 -0.80 16 28 H 0.06 0.31 7.91 -51.93 -0.41 -0.10 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.27 7.91 -51.93 -0.41 -0.14 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.10 1.22 7.06 -51.93 -0.37 0.86 16 37 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.36 9.05 5.53 -40.82 -0.23 8.83 16 42 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 43 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.14 2.02 4.30 -63.57 -0.27 1.75 16 45 H 0.19 1.68 8.04 -52.49 -0.42 1.26 16 LS Contribution 377.28 15.07 5.69 5.69 Total: -1.00 -35.31 377.28 -8.78 -44.09 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.77 Total: 5.78 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -0.18 Total: 5.08 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -0.13 Total: -62.25 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.28 Total: -15.67 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.71 Total: 18.09 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.39 Total: -0.80 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.31 -8.78 -44.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502080915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.832 kcal (2) G-P(sol) polarization free energy of solvation -35.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds