Wall clock time and date at job start Tue Mar 31 2020 22:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47404 * 2 1 4 4 C 1.50699 * 109.47267 * 120.00013 * 2 1 3 5 5 N 1.28649 * 124.72196 * 120.00108 * 4 2 1 6 6 C 1.33557 * 115.76851 * 179.97438 * 5 4 2 7 7 C 1.47269 * 123.14290 * 179.97438 * 6 5 4 8 8 O 1.21628 * 119.99878 * 172.31760 * 7 6 5 9 9 N 1.34780 * 119.99802 * 352.31671 * 7 6 5 10 10 C 1.47142 * 120.98063 * 172.34232 * 9 7 6 11 11 C 1.53301 * 108.38437 * 129.48752 * 10 9 7 12 12 O 1.42960 * 109.22226 * 52.30232 * 11 10 9 13 13 C 1.42961 * 114.16691 * 297.42457 * 12 11 10 14 14 H 1.09000 * 109.54964 * 302.62454 * 13 12 11 15 15 C 1.53008 * 109.51197 * 182.50394 * 13 12 11 16 16 N 1.46502 * 109.47053 * 65.24895 * 15 13 12 17 17 C 1.36940 * 119.99819 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99741 * 0.02562 * 17 16 15 19 19 C 1.38808 * 119.99905 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99917 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99922 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47261 * 90.00130 * 21 19 17 23 23 H 1.48508 * 109.46764 * 209.99777 * 21 19 17 24 24 H 1.48495 * 109.47188 * 329.99737 * 21 19 17 25 25 C 1.47154 * 120.98091 * 352.36984 * 9 7 6 26 26 C 1.35208 * 113.71648 * 0.24746 * 6 5 4 27 27 S 1.70768 * 124.72142 * 299.99907 * 4 2 1 28 28 H 1.09000 * 109.47073 * 300.00107 * 1 2 3 29 29 H 1.09000 * 109.47460 * 59.99540 * 1 2 3 30 30 H 1.08992 * 109.47337 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47013 * 240.00395 * 2 1 3 32 32 H 1.09001 * 109.47381 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46683 * 300.00512 * 3 2 1 34 34 H 1.09000 * 109.47093 * 59.99905 * 3 2 1 35 35 H 1.08993 * 109.68673 * 249.21276 * 10 9 7 36 36 H 1.09003 * 109.68648 * 9.73358 * 10 9 7 37 37 H 1.09003 * 109.51555 * 172.22807 * 11 10 9 38 38 H 1.09002 * 109.51235 * 292.37899 * 11 10 9 39 39 H 1.09000 * 109.46741 * 305.24749 * 15 13 12 40 40 H 1.08995 * 109.46760 * 185.24975 * 15 13 12 41 41 H 0.96996 * 119.99776 * 359.97438 * 16 15 13 42 42 H 0.97006 * 119.99989 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.68277 * 110.78975 * 25 9 7 44 44 H 1.08998 * 109.68636 * 350.23346 * 25 9 7 45 45 H 1.08002 * 125.58631 * 179.75459 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 2.7751 -1.7608 1.2182 6 6 3.1173 -2.2438 2.4154 7 6 3.9612 -3.4379 2.5906 8 8 4.3535 -3.7480 3.6993 9 7 4.2986 -4.1872 1.5223 10 6 5.2724 -5.2837 1.6433 11 6 4.6616 -6.5438 1.0196 12 8 4.2065 -6.2419 -0.3016 13 6 3.1702 -5.2584 -0.3531 14 1 2.3233 -5.5890 0.2482 15 6 2.7223 -5.0635 -1.8031 16 7 2.1026 -6.2973 -2.2928 17 6 1.6216 -6.3604 -3.5734 18 1 1.6995 -5.5007 -4.2225 19 6 1.0350 -7.5297 -4.0376 20 7 0.5722 -7.5902 -5.2683 21 14 0.9009 -9.0168 -2.9152 22 1 -0.3833 -8.9616 -2.1715 23 1 0.9482 -10.2577 -3.7298 24 1 2.0312 -9.0136 -1.9521 25 6 3.7046 -3.9325 0.2003 26 6 2.6118 -1.5374 3.4516 27 16 1.6949 -0.2332 2.8350 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 6.1892 -5.0205 1.1159 36 1 5.4931 -5.4643 2.6954 37 1 5.4155 -7.3298 0.9742 38 1 3.8207 -6.8795 1.6265 39 1 3.5869 -4.8210 -2.4210 40 1 1.9997 -4.2490 -1.8538 41 1 2.0330 -7.0695 -1.7100 42 1 0.1619 -8.4072 -5.5926 43 1 4.4635 -3.5331 -0.4724 44 1 2.8866 -3.2186 0.2968 45 1 2.7639 -1.7598 4.4975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502080915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:48 Heat of formation + Delta-G solvation = -31.763953 kcal Electronic energy + Delta-G solvation = -27811.783930 eV Core-core repulsion = 23956.249627 eV Total energy + Delta-G solvation = -3855.534303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 23.44 seconds Orbital eigenvalues (eV) -42.05935 -40.52150 -39.42865 -36.77868 -36.46009 -35.87353 -34.00465 -32.31824 -31.23780 -29.79217 -28.03888 -27.31510 -27.01172 -24.84248 -24.37720 -23.06424 -22.33361 -21.44148 -20.35725 -19.78060 -19.37302 -17.90465 -17.48690 -17.32696 -16.93330 -16.64693 -16.57633 -16.14028 -15.95927 -15.49156 -15.43523 -15.11014 -14.82174 -14.63877 -14.43405 -14.27225 -14.08836 -13.80148 -13.74229 -13.33943 -13.03605 -13.00400 -12.87173 -12.66754 -12.53588 -12.37689 -12.13407 -12.08864 -11.92424 -11.84085 -11.75329 -11.36577 -11.24971 -11.01416 -10.73961 -10.34447 -10.01468 -9.65061 -9.31435 -8.02836 -5.35830 -0.57352 0.19624 0.54072 0.74788 1.37073 1.39559 1.47769 1.73836 2.09936 2.48118 2.66018 2.77950 3.29157 3.36296 3.50125 3.79036 3.87459 3.94551 3.96768 4.06065 4.09523 4.16768 4.18787 4.21778 4.35339 4.42833 4.52597 4.62234 4.66569 4.77029 4.78794 4.90810 4.91850 4.95771 4.96774 5.08852 5.17881 5.33684 5.36172 5.37933 5.74209 6.05090 6.13669 6.21327 6.35470 6.84905 7.06382 7.81987 8.01628 9.18419 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010866 B = 0.003610 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.206682 B = 7754.486714 C = 9639.804628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.025 4.025 3 C -0.144 4.144 4 C 0.021 3.979 5 N -0.463 5.463 6 C -0.017 4.017 7 C 0.592 3.408 8 O -0.566 6.566 9 N -0.599 5.599 10 C 0.078 3.922 11 C 0.046 3.954 12 O -0.389 6.389 13 C 0.078 3.922 14 H 0.053 0.947 15 C 0.169 3.831 16 N -0.755 5.755 17 C -0.233 4.233 18 H 0.063 0.937 19 C -0.058 4.058 20 N -0.981 5.981 21 Si 0.949 3.051 22 H -0.277 1.277 23 H -0.293 1.293 24 H -0.259 1.259 25 C 0.073 3.927 26 C -0.236 4.236 27 S 0.304 5.696 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.129 0.871 38 H 0.050 0.950 39 H 0.032 0.968 40 H 0.055 0.945 41 H 0.365 0.635 42 H 0.258 0.742 43 H 0.077 0.923 44 H 0.151 0.849 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.557 20.523 20.564 29.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.047 4.047 3 C -0.202 4.202 4 C -0.258 4.258 5 N -0.178 5.178 6 C -0.152 4.152 7 C 0.380 3.620 8 O -0.447 6.447 9 N -0.330 5.330 10 C -0.044 4.044 11 C -0.032 4.032 12 O -0.308 6.308 13 C 0.019 3.981 14 H 0.071 0.929 15 C 0.042 3.958 16 N -0.400 5.400 17 C -0.364 4.364 18 H 0.081 0.919 19 C -0.250 4.250 20 N -0.631 5.631 21 Si 0.777 3.223 22 H -0.203 1.203 23 H -0.219 1.219 24 H -0.184 1.184 25 C -0.050 4.050 26 C -0.379 4.379 27 S 0.563 5.437 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.147 0.853 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.198 0.802 42 H 0.067 0.933 43 H 0.096 0.904 44 H 0.167 0.833 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 3.416 20.941 20.726 29.660 hybrid contribution 0.542 -2.246 0.406 2.345 sum 3.958 18.695 21.131 28.490 Atomic orbital electron populations 1.21966 0.91963 1.02591 1.04172 1.20013 0.96988 0.96228 0.91506 1.21940 1.01419 0.92724 1.04162 1.27855 0.99614 0.96163 1.02128 1.66845 1.14572 1.11246 1.25180 1.20172 1.05956 1.00399 0.88635 1.17454 0.79194 0.81828 0.83566 1.90756 1.57014 1.72083 1.24802 1.48003 1.42829 1.32730 1.09457 1.22452 0.91810 0.86494 1.03687 1.23130 0.99765 0.96807 0.83452 1.88069 1.54950 1.59810 1.28006 1.22701 0.89577 0.88843 0.97007 0.92940 1.20690 0.95648 0.88918 0.90550 1.42618 1.72467 1.12733 1.12225 1.19060 1.29575 0.98578 0.89181 0.91878 1.25403 1.01178 1.00749 0.97673 1.69864 1.47150 1.28560 1.17561 0.85483 0.78551 0.79532 0.78736 1.20283 1.21934 1.18440 1.23198 1.02022 0.97493 0.82309 1.26899 1.03585 1.01333 1.06085 1.82439 1.42085 1.22111 0.97043 0.90816 0.89625 0.93171 0.88739 0.92599 0.89580 0.90951 0.89320 0.87766 0.85292 0.93197 0.94954 0.92683 0.80235 0.93273 0.90436 0.83286 0.78608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.09 71.98 0.65 -0.99 16 2 C -0.03 -0.34 3.34 -11.54 -0.04 -0.38 16 3 C -0.14 -1.28 9.09 71.98 0.65 -0.63 16 4 C 0.02 0.35 6.00 88.57 0.53 0.88 16 5 N -0.46 -10.65 6.83 -180.83 -1.24 -11.88 16 6 C -0.02 -0.42 6.47 40.56 0.26 -0.16 16 7 C 0.59 17.24 7.66 86.62 0.66 17.91 16 8 O -0.57 -18.54 16.21 -4.12 -0.07 -18.61 16 9 N -0.60 -16.76 3.02 -821.41 -2.48 -19.24 16 10 C 0.08 1.91 6.66 86.36 0.57 2.48 16 11 C 0.05 1.19 6.99 72.08 0.50 1.69 16 12 O -0.39 -13.42 10.33 -148.98 -1.54 -14.96 16 13 C 0.08 2.60 2.81 30.70 0.09 2.69 16 14 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 15 C 0.17 6.71 5.93 86.38 0.51 7.22 16 16 N -0.75 -37.30 5.36 -343.44 -1.84 -39.14 16 17 C -0.23 -13.67 10.47 84.03 0.88 -12.79 16 18 H 0.06 3.97 8.06 -2.91 -0.02 3.95 16 19 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 20 N -0.98 -63.58 13.97 21.65 0.30 -63.28 16 21 Si 0.95 47.17 27.74 68.60 1.90 49.07 16 22 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 23 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 24 H -0.26 -12.13 6.52 99.48 0.65 -11.48 16 25 C 0.07 2.08 5.41 86.35 0.47 2.55 16 26 C -0.24 -4.39 10.62 67.12 0.71 -3.68 16 27 S 0.30 3.66 22.22 -56.49 -1.26 2.41 16 28 H 0.07 0.57 7.91 -2.39 -0.02 0.55 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.44 7.91 -2.39 -0.02 0.42 16 35 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.10 2.47 7.06 -2.39 -0.02 2.46 16 37 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.36 17.75 5.53 -92.71 -0.51 17.24 16 42 H 0.26 15.93 8.31 -92.70 -0.77 15.16 16 43 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.15 4.17 4.30 -25.38 -0.11 4.06 16 45 H 0.20 3.19 8.04 -2.91 -0.02 3.17 16 Total: -1.00 -76.49 377.28 1.05 -75.44 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.33 Total: 26.45 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 6.93 Total: 13.75 kcal Atomic # 7 Polarization: -128.29 SS G_CDS: -5.25 Total: -133.54 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -1.61 Total: -33.57 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.90 Total: 49.07 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.26 Total: 2.41 kcal Total: -76.49 1.05 -75.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502080915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.676 kcal (2) G-P(sol) polarization free energy of solvation -76.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.45 seconds