Wall clock time and date at job start Wed Apr 1 2020 00:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34658 * 120.00325 * 2 1 4 4 C 1.46657 * 119.99900 * 5.49741 * 3 2 1 5 5 O 1.21668 * 120.00201 * 5.46808 * 4 3 2 6 6 N 1.34772 * 119.99794 * 185.46608 * 4 3 2 7 7 C 1.46507 * 119.99799 * 179.97438 * 6 4 3 8 8 C 1.50707 * 109.47003 * 180.02562 * 7 6 4 9 9 C 1.38320 * 119.96300 * 269.72679 * 8 7 6 10 10 C 1.38283 * 120.13071 * 179.76516 * 9 8 7 11 11 C 1.38122 * 120.07252 * 0.51074 * 10 9 8 12 12 C 1.38858 * 119.92765 * 359.74757 * 11 10 9 13 13 O 1.35753 * 120.06939 * 179.97438 * 12 11 10 14 14 C 1.34838 * 116.99401 * 354.38783 * 13 12 11 15 15 H 1.07992 * 120.00103 * 5.07439 * 14 13 12 16 16 C 1.38662 * 119.99475 * 185.06748 * 14 13 12 17 17 N 1.31560 * 119.99778 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99896 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47299 * 59.99926 * 18 16 14 20 20 H 1.48491 * 109.47038 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46883 * 300.00292 * 18 16 14 22 22 C 1.38074 * 119.96191 * 90.00552 * 8 7 6 23 23 C 1.47370 * 119.99677 * 179.97438 * 2 1 3 24 24 C 1.39815 * 120.13142 * 0.02562 * 23 2 1 25 25 N 1.31985 * 119.83313 * 180.02562 * 24 23 2 26 26 C 1.32201 * 120.10349 * 0.02562 * 25 24 23 27 27 C 1.38657 * 120.27225 * 0.24809 * 26 25 24 28 28 N 1.31847 * 120.16367 * 359.47859 * 27 26 25 29 29 H 1.08993 * 109.47269 * 174.69991 * 1 2 3 30 30 H 1.08998 * 109.46578 * 294.70112 * 1 2 3 31 31 H 1.09002 * 109.47011 * 54.69465 * 1 2 3 32 32 H 1.07996 * 119.99726 * 185.49487 * 3 2 1 33 33 H 0.96997 * 120.00555 * 0.02562 * 6 4 3 34 34 H 1.08992 * 109.47191 * 300.00130 * 7 6 4 35 35 H 1.09000 * 109.46618 * 60.00811 * 7 6 4 36 36 H 1.07993 * 119.93643 * 0.02562 * 9 8 7 37 37 H 1.08004 * 119.96697 * 180.25308 * 10 9 8 38 38 H 1.08004 * 120.03365 * 179.71754 * 11 10 9 39 39 H 0.96997 * 119.99239 * 179.97438 * 17 16 14 40 40 H 1.08000 * 120.03813 * 359.94940 * 22 8 7 41 41 H 1.08002 * 120.08761 * 0.04195 * 24 23 2 42 42 H 1.08007 * 119.86390 * 179.97438 * 26 25 24 43 43 H 1.07997 * 119.91750 * 179.74530 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1804 1.1661 0.0000 4 6 1.4522 2.4333 0.1217 5 8 0.2522 2.4286 0.3223 6 7 2.1124 3.6031 0.0113 7 6 1.3848 4.8690 0.1322 8 6 2.3463 6.0183 -0.0291 9 6 2.9803 6.5494 1.0796 10 6 3.8668 7.6008 0.9350 11 6 4.1137 8.1308 -0.3163 12 6 3.4747 7.6032 -1.4305 13 8 3.7149 8.1222 -2.6617 14 6 4.4932 9.2217 -2.7212 15 1 4.9608 9.6015 -1.8249 16 6 4.6931 9.8647 -3.9334 17 7 4.1231 9.4022 -5.0252 18 14 5.7717 11.3876 -4.0161 19 1 7.1434 11.0480 -3.5596 20 1 5.8234 11.8821 -5.4152 21 1 5.2053 12.4435 -3.1388 22 6 2.5888 6.5437 -1.2827 23 6 2.2438 -1.2763 0.0006 24 6 1.5475 -2.4887 0.0006 25 7 2.2133 -3.6283 0.0016 26 6 3.5353 -3.6239 0.0031 27 6 4.2302 -2.4241 0.0089 28 7 3.5759 -1.2794 0.0024 29 1 -0.3633 -1.0232 -0.0949 30 1 -0.3632 0.4295 0.9336 31 1 -0.3633 0.5939 -0.8387 32 1 3.2566 1.1682 -0.0896 33 1 3.0690 3.6070 -0.1491 34 1 0.6201 4.9240 -0.6424 35 1 0.9131 4.9245 1.1133 36 1 2.7858 6.1395 2.0596 37 1 4.3634 8.0108 1.8020 38 1 4.8028 8.9550 -0.4280 39 1 4.2627 9.8523 -5.8730 40 1 2.0907 6.1309 -2.1475 41 1 0.4675 -2.4928 -0.0005 42 1 4.0762 -4.5587 0.0044 43 1 5.3102 -2.4272 0.0142 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001529258835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:11 Heat of formation + Delta-G solvation = 7.106439 kcal Electronic energy + Delta-G solvation = -26639.441921 eV Core-core repulsion = 22650.149214 eV Total energy + Delta-G solvation = -3989.292708 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 14.83 seconds Orbital eigenvalues (eV) -42.07465 -41.07275 -40.56196 -38.51794 -36.67374 -35.69789 -34.97053 -34.28914 -32.44459 -31.65262 -30.79709 -29.17343 -27.55675 -26.87665 -25.84579 -25.20705 -23.28554 -22.71969 -22.18403 -20.61795 -19.51562 -18.86541 -18.54333 -18.25522 -17.69264 -17.03267 -16.80649 -16.60977 -16.27268 -16.10922 -16.08917 -15.78549 -15.50117 -15.41503 -15.01259 -14.51666 -14.37049 -14.07923 -13.98700 -13.88794 -13.62280 -13.37058 -13.22156 -13.00109 -12.75803 -12.52336 -12.50186 -12.43796 -12.38626 -12.27655 -12.14575 -11.22446 -11.18680 -10.87540 -10.78560 -10.16006 -10.13105 -9.75712 -9.58801 -9.03881 -8.47168 -6.15841 -0.82114 0.03045 0.38197 0.69918 0.72192 1.35383 1.45754 1.51562 2.17339 2.19754 2.25173 2.76950 2.81370 2.90043 3.15549 3.25799 3.39622 3.41654 3.66047 3.82507 3.94772 4.07741 4.09975 4.16140 4.30525 4.34263 4.41968 4.43999 4.52489 4.65679 4.71756 4.74493 4.82724 5.01076 5.02286 5.11379 5.21738 5.25279 5.33661 5.40056 5.44583 5.61902 5.70074 5.71346 6.01168 6.16223 6.22566 6.53443 6.71132 6.97382 7.18417 7.77597 8.75645 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016225 B = 0.001844 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.295817 B =15182.028256 C =15858.484906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.001 4.001 3 C -0.181 4.181 4 C 0.541 3.459 5 O -0.566 6.566 6 N -0.711 5.711 7 C 0.175 3.825 8 C -0.059 4.059 9 C -0.169 4.169 10 C -0.070 4.070 11 C -0.234 4.234 12 C 0.111 3.889 13 O -0.232 6.232 14 C -0.413 4.413 15 H 0.104 0.896 16 C -0.024 4.024 17 N -0.921 5.921 18 Si 1.018 2.982 19 H -0.256 1.256 20 H -0.274 1.274 21 H -0.257 1.257 22 C -0.182 4.182 23 C 0.084 3.916 24 C 0.065 3.935 25 N -0.459 5.459 26 C 0.058 3.942 27 C 0.056 3.944 28 N -0.453 5.453 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.146 0.854 33 H 0.411 0.589 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.121 0.879 39 H 0.272 0.728 40 H 0.107 0.893 41 H 0.194 0.806 42 H 0.208 0.792 43 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.290 -22.583 13.975 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.004 4.004 3 C -0.203 4.203 4 C 0.332 3.668 5 O -0.448 6.448 6 N -0.362 5.362 7 C 0.052 3.948 8 C -0.060 4.060 9 C -0.188 4.188 10 C -0.088 4.088 11 C -0.254 4.254 12 C 0.061 3.939 13 O -0.139 6.139 14 C -0.489 4.489 15 H 0.121 0.879 16 C -0.222 4.222 17 N -0.559 5.559 18 Si 0.837 3.163 19 H -0.180 1.180 20 H -0.198 1.198 21 H -0.182 1.182 22 C -0.202 4.202 23 C -0.053 4.053 24 C -0.093 4.093 25 N -0.173 5.173 26 C -0.102 4.102 27 C -0.106 4.106 28 N -0.168 5.168 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.164 0.836 33 H 0.247 0.753 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.139 0.861 39 H 0.081 0.919 40 H 0.125 0.875 41 H 0.211 0.789 42 H 0.225 0.775 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -1.245 -22.598 13.673 26.441 hybrid contribution 1.008 1.044 -0.759 1.638 sum -0.237 -21.554 12.914 25.127 Atomic orbital electron populations 1.21004 0.88506 1.02964 1.04059 1.20887 0.96407 0.89669 0.93429 1.22871 1.01437 0.90862 1.05166 1.18585 0.86842 0.84659 0.76745 1.90780 1.15449 1.88099 1.50446 1.45939 1.12843 1.04839 1.72534 1.20051 0.92237 0.79703 1.02808 1.19463 0.97845 0.96760 0.91908 1.21004 1.00100 0.99169 0.98502 1.21170 0.96499 0.95157 0.95946 1.21376 1.05696 1.04958 0.93348 1.19870 0.94268 0.93907 0.85860 1.83952 1.63386 1.41681 1.24852 1.21789 1.26686 1.03462 0.96990 0.87899 1.26603 0.99438 1.02524 0.93595 1.70185 1.44001 1.41807 0.99886 0.84649 0.77828 0.75564 0.78210 1.18018 1.19836 1.18181 1.20229 1.02361 0.99451 0.98119 1.20836 0.90667 0.94445 0.99308 1.24266 1.03012 0.87268 0.94789 1.68556 1.10152 1.29441 1.09201 1.24599 0.90531 1.01468 0.93630 1.24440 1.03629 0.87774 0.94791 1.68457 1.08084 1.31648 1.08626 0.89692 0.89783 0.90856 0.83620 0.75318 0.91659 0.89243 0.83414 0.83328 0.86122 0.91885 0.87477 0.78938 0.77511 0.77729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 8.20 71.24 0.58 -1.35 16 2 C 0.00 -0.01 6.05 -18.28 -0.11 -0.12 16 3 C -0.18 -3.93 9.55 23.65 0.23 -3.70 16 4 C 0.54 13.91 7.69 86.44 0.66 14.57 16 5 O -0.57 -17.06 13.24 -4.25 -0.06 -17.12 16 6 N -0.71 -17.58 5.54 -470.85 -2.61 -20.19 16 7 C 0.18 4.75 5.80 85.63 0.50 5.24 16 8 C -0.06 -1.88 5.25 -19.88 -0.10 -1.98 16 9 C -0.17 -4.81 9.70 22.30 0.22 -4.59 16 10 C -0.07 -2.20 10.04 22.25 0.22 -1.97 16 11 C -0.23 -9.67 9.17 22.39 0.21 -9.47 16 12 C 0.11 5.36 6.65 22.58 0.15 5.51 16 13 O -0.23 -13.75 9.76 -22.86 -0.22 -13.97 16 14 C -0.41 -23.67 9.49 67.92 0.64 -23.02 16 15 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 16 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 17 N -0.92 -56.30 13.67 21.62 0.30 -56.01 16 18 Si 1.02 42.29 29.55 68.60 2.03 44.32 16 19 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 20 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 C -0.18 -7.48 9.64 22.39 0.22 -7.27 16 23 C 0.08 1.53 6.70 41.72 0.28 1.81 16 24 C 0.07 1.00 10.62 85.05 0.90 1.90 16 25 N -0.46 -7.02 10.49 -193.89 -2.03 -9.06 16 26 C 0.06 0.58 11.22 84.74 0.95 1.54 16 27 C 0.06 0.63 11.22 84.79 0.95 1.58 16 28 N -0.45 -8.18 9.51 -184.66 -1.76 -9.93 16 29 H 0.08 0.96 5.63 -2.39 -0.01 0.94 16 30 H 0.08 1.69 7.13 -2.39 -0.02 1.67 16 31 H 0.07 1.53 7.41 -2.39 -0.02 1.51 16 32 H 0.15 2.93 7.44 -2.91 -0.02 2.91 16 33 H 0.41 9.19 8.44 -92.71 -0.78 8.41 16 34 H 0.07 1.92 8.08 -2.39 -0.02 1.90 16 35 H 0.09 2.20 8.08 -2.39 -0.02 2.18 16 36 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 37 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.12 5.06 5.64 -2.91 -0.02 5.05 16 39 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 40 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 41 H 0.19 1.98 5.94 -2.91 -0.02 1.96 16 42 H 0.21 0.43 8.06 -2.91 -0.02 0.40 16 43 H 0.21 0.79 8.06 -2.91 -0.02 0.77 16 Total: -1.00 -77.14 373.18 2.90 -74.24 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.29 Total: 29.95 kcal Atomic # 6 Polarization: -29.18 SS G_CDS: 6.96 Total: -22.22 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -6.11 Total: -95.19 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.28 Total: -31.10 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -77.14 2.90 -74.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001529258835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.347 kcal (2) G-P(sol) polarization free energy of solvation -77.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.83 seconds