Wall clock time and date at job start Wed Apr 1 2020 01:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46778 * 2 1 4 4 N 1.46501 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.46501 * 120.00068 * 90.00050 * 4 3 2 6 6 C 1.53003 * 109.47048 * 269.99681 * 5 4 3 7 7 N 1.46501 * 109.47048 * 179.97438 * 6 5 4 8 8 C 1.34783 * 119.99729 * 180.02562 * 7 6 5 9 9 O 1.21695 * 120.00227 * 0.02562 * 8 7 6 10 10 C 1.46673 * 119.99666 * 179.97438 * 8 7 6 11 11 C 1.37877 * 126.23622 * 180.02562 * 10 8 7 12 12 C 1.39828 * 107.08803 * 179.72580 * 11 10 8 13 13 C 1.35452 * 107.86747 * 0.41586 * 12 11 10 14 14 N 1.35535 * 108.86977 * 359.57414 * 13 12 11 15 15 H 0.97001 * 125.67840 * 180.22791 * 14 13 12 16 16 C 1.34781 * 119.99887 * 270.00126 * 4 3 2 17 17 O 1.21282 * 119.99740 * 179.97438 * 16 4 3 18 18 C 1.50695 * 119.99915 * 359.97438 * 16 4 3 19 19 S 1.81007 * 109.46926 * 180.02562 * 18 16 4 20 20 C 1.76206 * 99.99806 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00170 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.99831 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00072 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99940 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47534 * 89.99533 * 24 22 20 26 26 H 1.48504 * 109.46951 * 209.99538 * 24 22 20 27 27 H 1.48504 * 109.47051 * 329.99133 * 24 22 20 28 28 H 1.09004 * 109.47048 * 60.00414 * 1 2 3 29 29 H 1.09001 * 109.46821 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47407 * 299.99719 * 1 2 3 31 31 H 1.08999 * 109.47407 * 240.00281 * 2 1 3 32 32 H 1.08997 * 109.47557 * 120.00030 * 2 1 3 33 33 H 1.09000 * 109.47057 * 60.00519 * 3 2 1 34 34 H 1.08997 * 109.47279 * 299.99363 * 3 2 1 35 35 H 1.08996 * 109.46888 * 150.00317 * 5 4 3 36 36 H 1.08993 * 109.47548 * 29.99795 * 5 4 3 37 37 H 1.09002 * 109.46814 * 60.00094 * 6 5 4 38 38 H 1.08995 * 109.47541 * 300.00291 * 6 5 4 39 39 H 0.97000 * 120.00269 * 0.02562 * 7 6 5 40 40 H 1.08002 * 126.45184 * 359.97438 * 11 10 8 41 41 H 1.08007 * 126.07013 * 180.25332 * 12 11 10 42 42 H 1.08002 * 125.56918 * 179.84904 * 13 12 11 43 43 H 1.09000 * 109.47547 * 299.99795 * 18 16 4 44 44 H 1.08999 * 109.47501 * 60.00602 * 18 16 4 45 45 H 0.97002 * 119.99959 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.2369 1.4428 -1.2697 6 6 4.4918 0.0004 -1.7116 7 7 5.2233 0.0006 -2.9809 8 6 5.5595 -1.1666 -3.5651 9 8 5.2551 -2.2206 -3.0384 10 6 6.2913 -1.1663 -4.8362 11 6 6.6976 -2.2783 -5.5430 12 6 7.3512 -1.8194 -6.6908 13 6 7.3415 -0.4652 -6.6612 14 7 6.6972 -0.0558 -5.5413 15 1 6.5476 0.8662 -5.2797 16 6 4.1793 1.4424 1.1663 17 8 5.3921 1.4420 1.1658 18 6 3.4263 1.4428 2.4717 19 16 4.6031 1.4432 3.8470 20 6 3.4835 1.4443 5.2076 21 1 2.4182 1.4441 5.0304 22 6 3.9708 1.4444 6.5073 23 7 3.1345 1.4457 7.5237 24 14 5.8135 1.4440 6.8139 25 1 6.3022 2.8439 6.8949 26 1 6.1026 0.7441 8.0914 27 1 6.5006 0.7434 5.6992 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 5.1893 1.9566 -1.1396 36 1 3.6475 1.9567 -2.0290 37 1 3.5394 -0.5135 -1.8416 38 1 5.0812 -0.5135 -0.9523 39 1 5.4656 0.8407 -3.4010 40 1 6.5372 -3.3094 -5.2647 41 1 7.7888 -2.4354 -7.4625 42 1 7.7726 0.1826 -7.4102 43 1 2.8000 2.3330 2.5297 44 1 2.7994 0.5530 2.5298 45 1 3.4750 1.4461 8.4320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001529475086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:23:51 Heat of formation + Delta-G solvation = -59.078472 kcal Electronic energy + Delta-G solvation = -26278.998966 eV Core-core repulsion = 22422.280216 eV Total energy + Delta-G solvation = -3856.718749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.23160 -41.18763 -40.13444 -37.66322 -36.19149 -34.68756 -33.92052 -32.27369 -31.80670 -30.58597 -29.07796 -27.86305 -27.05354 -24.76743 -23.41371 -22.57807 -21.55125 -21.15324 -20.79177 -19.98966 -19.55070 -18.34782 -17.51708 -17.15015 -16.97003 -16.83797 -16.61332 -16.30635 -15.74520 -15.58337 -15.29661 -15.05668 -14.93424 -14.79109 -14.63951 -14.45738 -14.34466 -13.77631 -13.55554 -13.37953 -13.27978 -13.20043 -13.06945 -13.01146 -12.99347 -12.69091 -12.33653 -12.16395 -11.88756 -11.61848 -11.44731 -11.18507 -11.00230 -10.55064 -10.37403 -9.97046 -9.90143 -9.20688 -9.02320 -8.53052 -6.24111 0.40921 0.94130 1.29019 1.37062 1.45618 1.50799 1.77351 1.82681 2.16031 2.23014 2.30357 2.32783 2.66163 2.85083 3.46594 3.70838 3.84198 3.90169 4.00731 4.04231 4.19721 4.26481 4.33991 4.40076 4.40486 4.41008 4.51796 4.52590 4.67575 4.70723 4.84150 4.91715 5.06473 5.12196 5.19870 5.22956 5.26485 5.41015 5.52177 5.69335 5.71464 5.89829 6.09822 6.13147 6.35634 6.59815 6.92091 6.99856 7.03695 8.59185 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.002299 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.068666 B =12178.403457 C =13298.067160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.147 4.147 3 C 0.103 3.897 4 N -0.600 5.600 5 C 0.112 3.888 6 C 0.111 3.889 7 N -0.710 5.710 8 C 0.585 3.415 9 O -0.580 6.580 10 C -0.083 4.083 11 C -0.128 4.128 12 C -0.231 4.231 13 C 0.050 3.950 14 N -0.525 5.525 15 H 0.432 0.568 16 C 0.535 3.465 17 O -0.556 6.556 18 C -0.107 4.107 19 S -0.179 6.179 20 C -0.526 4.526 21 H 0.063 0.937 22 C 0.046 3.954 23 N -0.915 5.915 24 Si 0.913 3.087 25 H -0.260 1.260 26 H -0.260 1.260 27 H -0.239 1.239 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.132 0.868 37 H 0.075 0.925 38 H 0.033 0.967 39 H 0.414 0.586 40 H 0.131 0.869 41 H 0.160 0.840 42 H 0.217 0.783 43 H 0.115 0.885 44 H 0.106 0.894 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.996 2.521 -33.317 33.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C -0.019 4.019 4 N -0.333 5.333 5 C -0.011 4.011 6 C -0.015 4.015 7 N -0.363 5.363 8 C 0.374 3.626 9 O -0.460 6.460 10 C -0.196 4.196 11 C -0.156 4.156 12 C -0.255 4.255 13 C -0.087 4.087 14 N -0.123 5.123 15 H 0.273 0.727 16 C 0.322 3.678 17 O -0.434 6.434 18 C -0.257 4.257 19 S 0.048 5.952 20 C -0.674 4.674 21 H 0.081 0.919 22 C -0.160 4.160 23 N -0.553 5.553 24 Si 0.735 3.265 25 H -0.185 1.185 26 H -0.184 1.184 27 H -0.164 1.164 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.139 0.861 35 H 0.101 0.899 36 H 0.149 0.851 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.251 0.749 40 H 0.149 0.851 41 H 0.178 0.822 42 H 0.233 0.767 43 H 0.133 0.867 44 H 0.124 0.876 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.438 1.969 -32.629 32.779 hybrid contribution -0.932 0.210 1.108 1.463 sum 1.506 2.179 -31.522 31.633 Atomic orbital electron populations 1.21669 0.93539 1.02317 1.02851 1.22035 0.97602 0.96975 1.01913 1.22057 0.76640 0.97466 1.05696 1.47789 1.08033 1.73214 1.04293 1.21665 0.99357 0.94596 0.85465 1.21695 0.96443 0.98804 0.84519 1.45480 1.58537 1.08426 1.23832 1.17416 0.78150 0.83662 0.83344 1.90842 1.56783 1.32902 1.65459 1.20067 1.13476 0.88864 0.97214 1.21542 1.00567 0.97563 0.95923 1.21228 1.08473 0.95192 1.00580 1.22772 0.98811 0.96333 0.90770 1.42001 1.43525 1.08175 1.18564 0.72741 1.20048 0.87227 0.75048 0.85447 1.90690 1.15244 1.50029 1.87401 1.23307 1.01757 1.07001 0.93662 1.84723 1.13862 1.97564 0.99062 1.22421 0.94340 1.58256 0.92392 0.91876 1.25547 1.02661 0.92945 0.94806 1.70011 1.36700 1.49076 0.99499 0.85885 0.80333 0.80269 0.79996 1.18470 1.18393 1.16352 0.90524 0.92704 0.92565 0.91319 0.93936 0.89701 0.86076 0.89897 0.85053 0.90709 0.94806 0.74949 0.85068 0.82207 0.76679 0.86717 0.87580 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 71.98 0.71 -1.46 16 2 C -0.15 -2.68 6.26 30.59 0.19 -2.48 16 3 C 0.10 1.68 5.26 86.38 0.45 2.13 16 4 N -0.60 -13.59 2.47 -821.81 -2.03 -15.62 16 5 C 0.11 1.89 5.56 86.38 0.48 2.37 16 6 C 0.11 2.36 6.00 86.38 0.52 2.88 16 7 N -0.71 -12.09 5.55 -467.07 -2.59 -14.69 16 8 C 0.58 14.09 7.79 86.44 0.67 14.76 16 9 O -0.58 -19.94 16.88 -4.33 -0.07 -20.01 16 10 C -0.08 -1.56 7.06 40.35 0.28 -1.27 16 11 C -0.13 -2.54 10.65 22.57 0.24 -2.30 16 12 C -0.23 -2.93 10.81 22.01 0.24 -2.69 16 13 C 0.05 0.36 11.89 83.48 0.99 1.35 16 14 N -0.53 -4.64 5.99 -183.61 -1.10 -5.74 16 15 H 0.43 0.69 8.19 -92.71 -0.76 -0.07 16 16 C 0.53 18.27 7.69 87.65 0.67 18.94 16 17 O -0.56 -23.38 15.44 -3.04 -0.05 -23.43 16 18 C -0.11 -4.06 4.71 71.23 0.34 -3.72 16 19 S -0.18 -9.12 18.55 -56.49 -1.05 -10.17 16 20 C -0.53 -30.77 10.04 67.95 0.68 -30.09 16 21 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 22 C 0.05 2.71 5.50 84.86 0.47 3.18 16 23 N -0.91 -55.83 13.97 21.65 0.30 -55.53 16 24 Si 0.91 45.42 27.74 68.60 1.90 47.32 16 25 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 26 H -0.26 -12.14 7.11 99.48 0.71 -11.44 16 27 H -0.24 -12.00 6.74 99.48 0.67 -11.33 16 28 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 1.23 6.26 -2.39 -0.01 1.21 16 32 H 0.04 1.02 7.22 -2.39 -0.02 1.00 16 33 H 0.08 1.48 6.44 -2.39 -0.02 1.46 16 34 H 0.12 1.05 7.89 -2.39 -0.02 1.03 16 35 H 0.08 1.61 7.42 -2.39 -0.02 1.59 16 36 H 0.13 0.97 7.89 -2.39 -0.02 0.95 16 37 H 0.07 1.61 6.26 -2.39 -0.01 1.59 16 38 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.41 3.41 7.60 -92.71 -0.70 2.70 16 40 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 41 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 42 H 0.22 -0.42 8.06 -2.91 -0.02 -0.45 16 43 H 0.11 3.95 7.40 -2.40 -0.02 3.93 16 44 H 0.11 3.88 7.19 -2.40 -0.02 3.86 16 45 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -87.37 389.53 1.78 -85.59 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -0.47 Total: 10.69 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 6.95 Total: 1.59 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -5.42 Total: -91.58 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -0.12 Total: -43.44 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.90 Total: 47.32 kcal Atomic # 16 Polarization: -9.12 SS G_CDS: -1.05 Total: -10.17 kcal Total: -87.37 1.78 -85.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001529475086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.512 kcal (2) G-P(sol) polarization free energy of solvation -87.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds