Wall clock time and date at job start Wed Apr 1 2020 01:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47068 * 156.20168 * 3 2 1 5 5 C 1.36791 * 119.99742 * 264.98145 * 4 3 2 6 6 H 1.07998 * 119.99645 * 214.79306 * 5 4 3 7 7 C 1.39078 * 120.00150 * 34.80097 * 5 4 3 8 8 N 1.31339 * 120.00334 * 14.73024 * 7 5 4 9 9 Si 1.86798 * 120.00020 * 194.73401 * 7 5 4 10 10 H 1.48504 * 109.47061 * 89.99568 * 9 7 5 11 11 H 1.48500 * 109.47566 * 209.99821 * 9 7 5 12 12 H 1.48500 * 109.47228 * 330.00131 * 9 7 5 13 13 C 1.34771 * 119.99493 * 84.98637 * 4 3 2 14 14 O 1.21632 * 120.00419 * 4.66697 * 13 4 3 15 15 C 1.47480 * 119.99644 * 184.66995 * 13 4 3 16 16 N 1.31183 * 120.39909 * 5.99928 * 15 13 4 17 17 N 1.27936 * 124.23610 * 180.02562 * 16 15 13 18 18 C 1.46498 * 118.23459 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.47355 * 60.00104 * 18 17 16 20 20 C 1.52999 * 109.47299 * 299.99765 * 18 17 16 21 21 C 1.34882 * 123.51980 * 0.27216 * 17 16 15 22 22 O 1.21743 * 120.76138 * 179.69937 * 21 17 16 23 23 C 1.46952 * 118.46956 * 359.48307 * 21 17 16 24 24 C 1.39127 * 122.90115 * 180.19631 * 23 21 17 25 25 C 1.37882 * 119.34268 * 180.26101 * 24 23 21 26 26 C 1.38862 * 120.73251 * 0.04047 * 25 24 23 27 27 C 1.37898 * 120.79745 * 359.97438 * 26 25 24 28 28 C 1.39045 * 119.39409 * 359.97438 * 27 26 25 29 29 H 4.40638 * 5.51454 * 180.02562 * 4 1 2 30 30 H 1.09004 * 109.46639 * 36.20378 * 3 2 1 31 31 H 1.08997 * 109.47037 * 276.20476 * 3 2 1 32 32 H 0.97003 * 120.00534 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46829 * 179.97438 * 18 17 16 34 34 H 1.08995 * 109.46919 * 179.97438 * 19 18 17 35 35 H 1.09003 * 109.46811 * 59.99411 * 19 18 17 36 36 H 1.09000 * 109.46632 * 299.99483 * 19 18 17 37 37 H 1.08997 * 109.46626 * 180.02562 * 20 18 17 38 38 H 1.08999 * 109.46727 * 300.00073 * 20 18 17 39 39 H 1.08994 * 109.47099 * 60.00316 * 20 18 17 40 40 H 1.08002 * 120.32929 * 0.25682 * 24 23 21 41 41 H 1.07996 * 119.63100 * 180.02562 * 25 24 23 42 42 H 1.08002 * 119.60025 * 180.02562 * 26 25 24 43 43 H 1.08004 * 120.30015 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2647 -0.5574 5 6 3.4594 1.3470 -1.8834 6 1 4.2790 1.9749 -2.2001 7 6 2.7350 0.6222 -2.8237 8 7 1.5774 0.0948 -2.4967 9 14 3.4084 0.3985 -4.5516 10 1 4.2355 -0.8337 -4.6049 11 1 2.2810 0.2798 -5.5109 12 1 4.2443 1.5716 -4.9128 13 6 3.2617 2.3462 0.2365 14 8 3.0539 2.2518 1.4312 15 6 3.6536 3.6443 -0.3435 16 7 3.7655 3.7841 -1.6431 17 7 4.1003 4.8739 -2.2236 18 6 4.1854 4.8822 -3.6861 19 6 2.8212 4.5231 -4.2785 20 6 5.2255 3.8570 -4.1423 21 6 4.3846 6.0139 -1.5611 22 8 4.7035 7.0219 -2.1648 23 6 4.2960 6.0124 -0.0943 24 6 4.5650 7.1364 0.6802 25 6 4.4642 7.0511 2.0527 26 6 4.0995 5.8592 2.6648 27 6 3.8292 4.7341 1.9146 28 6 3.9239 4.7988 0.5289 29 1 -1.0502 -0.0002 0.0003 30 1 3.0096 -0.8285 -0.6070 31 1 3.0094 -0.1102 1.0216 32 1 1.0719 -0.4104 -3.1526 33 1 4.4793 5.8749 -4.0272 34 1 2.8845 4.5298 -5.3666 35 1 2.0803 5.2535 -3.9534 36 1 2.5270 3.5305 -3.9374 37 1 5.2891 3.8637 -5.2304 38 1 6.1973 4.1130 -3.7203 39 1 4.9312 2.8645 -3.8012 40 1 4.8499 8.0665 0.2111 41 1 4.6715 7.9209 2.6584 42 1 4.0257 5.8131 3.7413 43 1 3.5458 3.8114 2.3990 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001538103408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:56 Heat of formation + Delta-G solvation = 88.885373 kcal Electronic energy + Delta-G solvation = -30505.553077 eV Core-core repulsion = 26519.806570 eV Total energy + Delta-G solvation = -3985.746507 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.42887 -38.88810 -38.31843 -37.22547 -35.25089 -34.65192 -32.07816 -31.58610 -31.26116 -30.83241 -29.76555 -26.99594 -26.65628 -25.52563 -24.34649 -24.17049 -22.02340 -21.08440 -20.14456 -18.58208 -18.11032 -17.74574 -17.03129 -16.26115 -16.07784 -15.80748 -15.24525 -14.72434 -14.56543 -14.44559 -14.09222 -14.00033 -13.81795 -13.61345 -13.17683 -12.86014 -12.71020 -12.35972 -12.25179 -12.11201 -12.09944 -11.86195 -11.70896 -11.66539 -11.49534 -11.21293 -11.03600 -10.98187 -10.79454 -10.40249 -9.99709 -9.42070 -9.32432 -9.26579 -9.01783 -8.87451 -8.80589 -8.54172 -7.88834 -7.66799 -6.43110 -4.11204 0.90995 1.06316 2.14512 2.68542 2.98443 3.08642 3.11587 3.14568 3.67492 3.90613 4.03645 4.23206 4.30467 4.41017 4.61690 4.94552 4.95673 5.02831 5.15562 5.23427 5.25355 5.38478 5.44860 5.55192 5.63912 5.67737 5.84893 5.85963 5.87032 6.02466 6.10380 6.13613 6.28681 6.45212 6.48293 6.51475 6.53477 6.59039 6.65092 6.66362 6.83625 7.08932 7.10750 7.39292 7.63140 7.93670 8.27737 8.80862 8.96139 9.00552 9.23923 9.65682 10.48913 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010677 B = 0.006152 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.813348 B = 4550.477939 C = 6657.545473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.105 4.105 3 C 0.238 3.762 4 N -0.403 5.403 5 C -0.313 4.313 6 H 0.121 0.879 7 C 0.044 3.956 8 N -0.833 5.833 9 Si 0.901 3.099 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.248 1.248 13 C 0.519 3.481 14 O -0.598 6.598 15 C 0.065 3.935 16 N -0.162 5.162 17 N -0.366 5.366 18 C 0.141 3.859 19 C -0.163 4.163 20 C -0.169 4.169 21 C 0.506 3.494 22 O -0.533 6.533 23 C -0.148 4.148 24 C -0.061 4.061 25 C -0.132 4.132 26 C -0.098 4.098 27 C -0.096 4.096 28 C -0.018 4.018 29 H 0.195 0.805 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.272 0.728 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.090 0.910 40 H 0.133 0.867 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.101 5.563 1.205 7.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.107 4.107 3 C 0.116 3.884 4 N -0.118 5.118 5 C -0.444 4.444 6 H 0.138 0.862 7 C -0.165 4.165 8 N -0.467 5.467 9 Si 0.727 3.273 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.172 1.172 13 C 0.309 3.691 14 O -0.484 6.484 15 C -0.111 4.111 16 N 0.016 4.984 17 N -0.185 5.185 18 C 0.041 3.959 19 C -0.221 4.221 20 C -0.227 4.227 21 C 0.301 3.699 22 O -0.410 6.410 23 C -0.154 4.154 24 C -0.080 4.080 25 C -0.151 4.151 26 C -0.117 4.117 27 C -0.115 4.115 28 C -0.023 4.023 29 H 0.212 0.788 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.126 0.874 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.151 0.849 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.984 5.565 0.458 6.859 hybrid contribution -0.086 0.500 -0.575 0.767 sum 3.898 6.065 -0.117 7.211 Atomic orbital electron populations 1.24087 0.95199 1.01534 1.06730 1.22752 0.94031 0.98879 0.95043 1.18088 0.84773 0.87544 0.97948 1.43525 1.52647 1.06452 1.09197 1.20137 1.14617 1.29148 0.80449 0.86243 1.25531 0.94277 0.96852 0.99857 1.70027 1.09939 1.31316 1.35467 0.86410 0.79091 0.79722 0.82074 1.20367 1.20946 1.17234 1.17162 0.84071 0.81758 0.86122 1.90492 1.59386 1.83659 1.14909 1.22739 1.05891 0.95546 0.86965 1.71657 1.07060 1.07018 1.12689 1.46744 1.56363 1.06319 1.09078 1.21420 0.97856 1.01804 0.74832 1.22146 0.95095 1.04278 1.00560 1.22376 0.97725 1.01219 1.01343 1.19217 0.78350 0.83946 0.88433 1.90767 1.48378 1.32034 1.69860 1.19959 1.07612 0.95494 0.92348 1.20842 0.96812 0.97050 0.93340 1.21195 1.01422 0.98318 0.94170 1.21470 0.97253 0.92617 1.00315 1.22149 0.96261 1.00766 0.92344 1.19552 0.96446 0.91383 0.94880 0.78761 0.88892 0.90480 0.91710 0.87430 0.91271 0.92760 0.89495 0.91209 0.92749 0.89088 0.84868 0.85575 0.85420 0.80892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.53 18.95 29.55 0.56 -4.97 16 2 C -0.11 -2.41 10.97 -37.12 -0.41 -2.82 16 3 C 0.24 5.23 5.15 -6.83 -0.04 5.20 16 4 N -0.40 -9.34 2.54 -119.15 -0.30 -9.65 16 5 C -0.31 -7.13 7.72 -15.03 -0.12 -7.25 16 6 H 0.12 2.67 4.13 -52.49 -0.22 2.45 16 7 C 0.04 1.00 4.99 -17.45 -0.09 0.91 16 8 N -0.83 -19.95 9.58 55.50 0.53 -19.42 16 9 Si 0.90 17.33 29.04 -169.99 -4.94 12.40 16 10 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 11 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 12 H -0.25 -4.34 5.02 56.52 0.28 -4.06 16 13 C 0.52 12.04 7.54 -12.50 -0.09 11.94 16 14 O -0.60 -14.16 13.35 5.25 0.07 -14.09 16 15 C 0.07 1.40 6.91 -80.74 -0.56 0.84 16 16 N -0.16 -3.37 5.82 34.50 0.20 -3.16 16 17 N -0.37 -7.01 3.07 -54.98 -0.17 -7.18 16 18 C 0.14 2.33 3.24 -67.93 -0.22 2.11 16 19 C -0.16 -2.60 9.26 37.16 0.34 -2.25 16 20 C -0.17 -2.59 8.88 37.16 0.33 -2.26 16 21 C 0.51 9.88 7.68 -12.68 -0.10 9.78 16 22 O -0.53 -10.76 15.90 5.15 0.08 -10.68 16 23 C -0.15 -2.73 5.90 -104.83 -0.62 -3.35 16 24 C -0.06 -0.95 9.71 -39.38 -0.38 -1.33 16 25 C -0.13 -1.72 10.01 -39.48 -0.40 -2.11 16 26 C -0.10 -1.35 10.01 -39.48 -0.40 -1.75 16 27 C -0.10 -1.67 9.35 -39.41 -0.37 -2.04 16 28 C -0.02 -0.36 5.90 -104.75 -0.62 -0.97 16 29 H 0.20 3.49 7.80 -54.08 -0.42 3.07 16 30 H 0.09 1.99 7.51 -51.93 -0.39 1.60 16 31 H 0.08 1.58 7.51 -51.93 -0.39 1.19 16 32 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 33 H 0.11 1.71 6.77 -51.93 -0.35 1.36 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.60 7.91 -51.93 -0.41 1.19 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 1.58 3.96 -51.93 -0.21 1.37 16 40 H 0.13 1.87 7.87 -52.49 -0.41 1.46 16 41 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.17 3.24 5.24 -52.48 -0.28 2.96 16 LS Contribution 356.43 15.07 5.37 5.37 Total: -1.00 -27.78 356.43 -7.18 -34.96 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -4.86 Total: 11.78 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -3.16 Total: -0.33 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.26 Total: -39.42 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: 0.15 Total: -24.77 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -4.94 Total: 12.40 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.78 -7.18 -34.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538103408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.846 kcal (2) G-P(sol) polarization free energy of solvation -27.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds