Wall clock time and date at job start Wed Apr 1 2020 01:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47068 * 156.20168 * 3 2 1 5 5 C 1.36791 * 119.99742 * 264.98145 * 4 3 2 6 6 H 1.07998 * 119.99645 * 214.79306 * 5 4 3 7 7 C 1.39078 * 120.00150 * 34.80097 * 5 4 3 8 8 N 1.31339 * 120.00334 * 14.73024 * 7 5 4 9 9 Si 1.86798 * 120.00020 * 194.73401 * 7 5 4 10 10 H 1.48504 * 109.47061 * 89.99568 * 9 7 5 11 11 H 1.48500 * 109.47566 * 209.99821 * 9 7 5 12 12 H 1.48500 * 109.47228 * 330.00131 * 9 7 5 13 13 C 1.34771 * 119.99493 * 84.98637 * 4 3 2 14 14 O 1.21632 * 120.00419 * 4.66697 * 13 4 3 15 15 C 1.47480 * 119.99644 * 184.66995 * 13 4 3 16 16 N 1.31183 * 120.39909 * 5.99928 * 15 13 4 17 17 N 1.27936 * 124.23610 * 180.02562 * 16 15 13 18 18 C 1.46498 * 118.23459 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.47355 * 60.00104 * 18 17 16 20 20 C 1.52999 * 109.47299 * 299.99765 * 18 17 16 21 21 C 1.34882 * 123.51980 * 0.27216 * 17 16 15 22 22 O 1.21743 * 120.76138 * 179.69937 * 21 17 16 23 23 C 1.46952 * 118.46956 * 359.48307 * 21 17 16 24 24 C 1.39127 * 122.90115 * 180.19631 * 23 21 17 25 25 C 1.37882 * 119.34268 * 180.26101 * 24 23 21 26 26 C 1.38862 * 120.73251 * 0.04047 * 25 24 23 27 27 C 1.37898 * 120.79745 * 359.97438 * 26 25 24 28 28 C 1.39045 * 119.39409 * 359.97438 * 27 26 25 29 29 H 4.40638 * 5.51454 * 180.02562 * 4 1 2 30 30 H 1.09004 * 109.46639 * 36.20378 * 3 2 1 31 31 H 1.08997 * 109.47037 * 276.20476 * 3 2 1 32 32 H 0.97003 * 120.00534 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46829 * 179.97438 * 18 17 16 34 34 H 1.08995 * 109.46919 * 179.97438 * 19 18 17 35 35 H 1.09003 * 109.46811 * 59.99411 * 19 18 17 36 36 H 1.09000 * 109.46632 * 299.99483 * 19 18 17 37 37 H 1.08997 * 109.46626 * 180.02562 * 20 18 17 38 38 H 1.08999 * 109.46727 * 300.00073 * 20 18 17 39 39 H 1.08994 * 109.47099 * 60.00316 * 20 18 17 40 40 H 1.08002 * 120.32929 * 0.25682 * 24 23 21 41 41 H 1.07996 * 119.63100 * 180.02562 * 25 24 23 42 42 H 1.08002 * 119.60025 * 180.02562 * 26 25 24 43 43 H 1.08004 * 120.30015 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2647 -0.5574 5 6 3.4594 1.3470 -1.8834 6 1 4.2790 1.9749 -2.2001 7 6 2.7350 0.6222 -2.8237 8 7 1.5774 0.0948 -2.4967 9 14 3.4084 0.3985 -4.5516 10 1 4.2355 -0.8337 -4.6049 11 1 2.2810 0.2798 -5.5109 12 1 4.2443 1.5716 -4.9128 13 6 3.2617 2.3462 0.2365 14 8 3.0539 2.2518 1.4312 15 6 3.6536 3.6443 -0.3435 16 7 3.7655 3.7841 -1.6431 17 7 4.1003 4.8739 -2.2236 18 6 4.1854 4.8822 -3.6861 19 6 2.8212 4.5231 -4.2785 20 6 5.2255 3.8570 -4.1423 21 6 4.3846 6.0139 -1.5611 22 8 4.7035 7.0219 -2.1648 23 6 4.2960 6.0124 -0.0943 24 6 4.5650 7.1364 0.6802 25 6 4.4642 7.0511 2.0527 26 6 4.0995 5.8592 2.6648 27 6 3.8292 4.7341 1.9146 28 6 3.9239 4.7988 0.5289 29 1 -1.0502 -0.0002 0.0003 30 1 3.0096 -0.8285 -0.6070 31 1 3.0094 -0.1102 1.0216 32 1 1.0719 -0.4104 -3.1526 33 1 4.4793 5.8749 -4.0272 34 1 2.8845 4.5298 -5.3666 35 1 2.0803 5.2535 -3.9534 36 1 2.5270 3.5305 -3.9374 37 1 5.2891 3.8637 -5.2304 38 1 6.1973 4.1130 -3.7203 39 1 4.9312 2.8645 -3.8012 40 1 4.8499 8.0665 0.2111 41 1 4.6715 7.9209 2.6584 42 1 4.0257 5.8131 3.7413 43 1 3.5458 3.8114 2.3990 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001538103408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:55 Heat of formation + Delta-G solvation = 75.187801 kcal Electronic energy + Delta-G solvation = -30506.147048 eV Core-core repulsion = 26519.806570 eV Total energy + Delta-G solvation = -3986.340478 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.89309 -40.56383 -39.63516 -38.76836 -36.98423 -36.01615 -33.78805 -33.29660 -32.66085 -32.11038 -31.20002 -28.38239 -28.21848 -27.18917 -25.76557 -25.64113 -23.39939 -22.38342 -21.78746 -20.16318 -19.66402 -19.15777 -18.63630 -17.78059 -17.58893 -17.30441 -16.74430 -16.24484 -16.17347 -15.76246 -15.73331 -15.41605 -15.13599 -15.03298 -14.52513 -14.47720 -14.26372 -13.85528 -13.71000 -13.64086 -13.49838 -13.26773 -13.09767 -12.98392 -12.90108 -12.71155 -12.44910 -12.34598 -12.20959 -11.98150 -11.40271 -11.11165 -11.04228 -10.62796 -10.60352 -10.53499 -10.22962 -10.12665 -9.63977 -9.11258 -8.15259 -5.89855 -0.40296 -0.33444 0.70343 1.26870 1.47047 1.53122 1.61551 1.64667 2.01563 2.35913 2.40180 2.49940 2.77703 2.93004 3.07302 3.26515 3.60963 3.73053 3.84827 3.97016 3.97601 3.99852 4.12697 4.20125 4.33845 4.34498 4.50446 4.60705 4.66908 4.69094 4.77945 4.81586 4.83993 4.88400 5.04881 5.17328 5.23587 5.24744 5.33320 5.43083 5.44404 5.48721 5.64833 5.82507 5.95344 6.44003 6.53482 7.11044 7.26598 7.33478 7.51650 7.89694 8.76483 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010677 B = 0.006152 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.813348 B = 4550.477939 C = 6657.545473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.141 4.141 3 C 0.240 3.760 4 N -0.414 5.414 5 C -0.323 4.323 6 H 0.122 0.878 7 C 0.012 3.988 8 N -0.862 5.862 9 Si 0.952 3.048 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.221 1.221 13 C 0.510 3.490 14 O -0.612 6.612 15 C 0.045 3.955 16 N -0.164 5.164 17 N -0.368 5.368 18 C 0.134 3.866 19 C -0.157 4.157 20 C -0.165 4.165 21 C 0.500 3.500 22 O -0.544 6.544 23 C -0.169 4.169 24 C -0.063 4.063 25 C -0.110 4.110 26 C -0.080 4.080 27 C -0.114 4.114 28 C -0.044 4.044 29 H 0.226 0.774 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.268 0.732 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.047 0.953 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.149 0.851 41 H 0.175 0.825 42 H 0.167 0.833 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.936 7.890 1.359 9.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.143 4.143 3 C 0.118 3.882 4 N -0.129 5.129 5 C -0.453 4.453 6 H 0.139 0.861 7 C -0.194 4.194 8 N -0.498 5.498 9 Si 0.776 3.224 10 H -0.208 1.208 11 H -0.219 1.219 12 H -0.144 1.144 13 C 0.300 3.700 14 O -0.499 6.499 15 C -0.131 4.131 16 N 0.013 4.987 17 N -0.188 5.188 18 C 0.034 3.966 19 C -0.215 4.215 20 C -0.222 4.222 21 C 0.295 3.705 22 O -0.424 6.424 23 C -0.175 4.175 24 C -0.082 4.082 25 C -0.128 4.128 26 C -0.098 4.098 27 C -0.134 4.134 28 C -0.048 4.048 29 H 0.243 0.757 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.135 0.865 34 H 0.120 0.880 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.166 0.834 41 H 0.193 0.807 42 H 0.185 0.815 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.832 7.888 0.609 9.270 hybrid contribution -0.345 -0.093 -0.493 0.609 sum 4.488 7.794 0.116 8.995 Atomic orbital electron populations 1.24899 0.96189 1.00321 1.05594 1.23184 0.94860 1.00061 0.96155 1.18080 0.84782 0.87281 0.98079 1.43715 1.52859 1.06792 1.09542 1.20295 1.14946 1.29535 0.80497 0.86077 1.26170 0.94207 0.96292 1.02769 1.70152 1.11049 1.32331 1.36238 0.85626 0.78451 0.80329 0.78027 1.20762 1.21863 1.14388 1.17511 0.83898 0.82448 0.86139 1.90465 1.59887 1.84195 1.15383 1.22687 1.06843 0.95725 0.87889 1.71552 1.06602 1.07864 1.12688 1.46968 1.55825 1.05938 1.10033 1.21702 0.98589 1.02731 0.73535 1.22109 0.94540 1.02280 1.02567 1.22356 0.97204 0.99434 1.03256 1.19475 0.78047 0.83807 0.89157 1.90741 1.49150 1.32219 1.70264 1.20107 1.09104 0.96290 0.91996 1.21187 0.96087 0.96474 0.94405 1.21711 0.98341 0.99359 0.93426 1.21893 0.94562 0.91360 1.02033 1.22073 0.97786 1.01709 0.91810 1.19560 0.98475 0.91129 0.95607 0.75745 0.89131 0.89963 0.92190 0.86482 0.87987 0.93378 0.92241 0.88173 0.92591 0.91149 0.83354 0.80718 0.81521 0.82792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.94 18.95 74.32 1.41 -9.54 16 2 C -0.14 -6.66 10.97 31.13 0.34 -6.32 16 3 C 0.24 10.99 5.15 84.57 0.44 11.43 16 4 N -0.41 -19.99 2.54 -649.13 -1.65 -21.63 16 5 C -0.32 -15.19 7.72 84.12 0.65 -14.54 16 6 H 0.12 5.57 4.13 -2.91 -0.01 5.56 16 7 C 0.01 0.54 4.99 84.97 0.42 0.96 16 8 N -0.86 -42.49 9.58 21.68 0.21 -42.28 16 9 Si 0.95 35.74 29.04 68.60 1.99 37.73 16 10 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 11 H -0.29 -11.34 7.11 99.48 0.71 -10.63 16 12 H -0.22 -7.23 5.02 99.48 0.50 -6.73 16 13 C 0.51 24.65 7.54 86.68 0.65 25.30 16 14 O -0.61 -30.19 13.35 -4.13 -0.06 -30.25 16 15 C 0.05 2.01 6.91 44.04 0.30 2.32 16 16 N -0.16 -6.99 5.82 -44.77 -0.26 -7.25 16 17 N -0.37 -14.15 3.07 -446.01 -1.37 -15.52 16 18 C 0.13 4.29 3.24 44.99 0.15 4.44 16 19 C -0.16 -4.86 9.26 71.98 0.67 -4.20 16 20 C -0.17 -4.80 8.88 71.98 0.64 -4.16 16 21 C 0.50 19.33 7.68 86.51 0.66 19.99 16 22 O -0.54 -21.47 15.90 -4.48 -0.07 -21.55 16 23 C -0.17 -6.12 5.90 -20.00 -0.12 -6.24 16 24 C -0.06 -1.75 9.71 22.40 0.22 -1.53 16 25 C -0.11 -2.36 10.01 22.33 0.22 -2.13 16 26 C -0.08 -1.95 10.01 22.34 0.22 -1.72 16 27 C -0.11 -3.91 9.35 22.38 0.21 -3.70 16 28 C -0.04 -1.71 5.90 -19.95 -0.12 -1.83 16 29 H 0.23 7.89 7.80 -4.41 -0.03 7.85 16 30 H 0.09 4.09 7.51 -2.39 -0.02 4.07 16 31 H 0.08 3.57 7.51 -2.39 -0.02 3.55 16 32 H 0.27 12.82 8.31 -92.71 -0.77 12.05 16 33 H 0.12 3.54 6.77 -2.39 -0.02 3.52 16 34 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 2.19 7.91 -2.39 -0.02 2.17 16 37 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 39 H 0.07 2.37 3.96 -2.39 -0.01 2.36 16 40 H 0.15 3.68 7.87 -2.91 -0.02 3.65 16 41 H 0.18 2.16 8.06 -2.91 -0.02 2.13 16 42 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 43 H 0.15 5.89 5.24 -2.91 -0.02 5.87 16 Total: -1.00 -62.97 356.43 6.62 -56.35 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: 0.85 Total: 35.86 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 6.97 Total: 8.54 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -3.07 Total: -86.69 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -0.13 Total: -51.79 kcal Atomic # 14 Polarization: 35.74 SS G_CDS: 1.99 Total: 37.73 kcal Total: -62.97 6.62 -56.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538103408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.533 kcal (2) G-P(sol) polarization free energy of solvation -62.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds