Wall clock time and date at job start Wed Apr 1 2020 00:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47186 * 2 1 4 4 H 1.08995 * 109.99750 * 53.02325 * 3 2 1 5 5 C 1.54321 * 109.88166 * 291.92822 * 3 2 1 6 6 H 1.09000 * 110.71840 * 21.31342 * 5 3 2 7 7 N 1.46495 * 110.72207 * 144.41262 * 5 3 2 8 8 C 1.34773 * 120.00244 * 205.00019 * 7 5 3 9 9 O 1.21272 * 120.00137 * 0.02562 * 8 7 5 10 10 C 1.50703 * 119.99891 * 179.97438 * 8 7 5 11 11 H 1.08997 * 109.47268 * 299.99715 * 10 8 7 12 12 C 1.52999 * 109.47226 * 60.00035 * 10 8 7 13 13 C 1.47203 * 109.47073 * 179.97438 * 10 8 7 14 14 N 7.98368 * 69.47827 * 329.57056 * 2 1 3 15 15 C 1.55448 * 102.96943 * 262.77715 * 5 3 2 16 16 C 1.54912 * 101.45086 * 324.51535 * 15 5 3 17 17 N 1.47019 * 109.88216 * 174.11928 * 3 2 1 18 18 C 1.34783 * 125.65145 * 300.50123 * 17 3 2 19 19 O 1.21285 * 119.99379 * 354.85753 * 18 17 3 20 20 C 1.50696 * 120.00215 * 174.86220 * 18 17 3 21 21 S 1.81002 * 109.47214 * 179.97438 * 20 18 17 22 22 C 1.76198 * 100.00186 * 180.02562 * 21 20 18 23 23 H 1.08000 * 119.99810 * 359.97438 * 22 21 20 24 24 C 1.38793 * 119.99762 * 180.02562 * 22 21 20 25 25 N 1.31631 * 120.00331 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99778 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46812 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.46940 * 119.99742 * 26 24 22 29 29 H 1.48502 * 109.46923 * 240.00006 * 26 24 22 30 30 H 1.09003 * 109.47479 * 185.52381 * 1 2 3 31 31 H 1.09005 * 109.46974 * 305.51326 * 1 2 3 32 32 H 1.09000 * 109.47270 * 65.51466 * 1 2 3 33 33 H 1.08999 * 109.46751 * 240.00090 * 2 1 3 34 34 H 1.08996 * 109.47553 * 120.00105 * 2 1 3 35 35 H 0.97006 * 120.00018 * 24.99762 * 7 5 3 36 36 H 1.08999 * 109.47125 * 299.99825 * 12 10 8 37 37 H 1.09003 * 109.47113 * 60.00080 * 12 10 8 38 38 H 1.08995 * 109.47482 * 179.97438 * 12 10 8 39 39 H 1.09004 * 111.11675 * 206.46885 * 15 5 3 40 40 H 1.08997 * 111.01804 * 82.52213 * 15 5 3 41 41 H 1.08992 * 110.37104 * 278.11734 * 16 15 5 42 42 H 1.08998 * 110.36815 * 155.89885 * 16 15 5 43 43 H 1.08999 * 109.47446 * 299.99837 * 20 18 17 44 44 H 1.09007 * 109.47061 * 60.00052 * 20 18 17 45 45 H 0.97001 * 120.00066 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5834 1.9993 0.8182 5 6 1.7040 2.1180 -1.3462 6 1 0.8845 1.5995 -1.8439 7 7 1.3764 3.5322 -1.1491 8 6 0.5938 4.1731 -2.0397 9 8 0.1603 3.5791 -3.0039 10 6 0.2565 5.6278 -1.8365 11 1 -0.2681 5.7503 -0.8889 12 6 1.5452 6.4522 -1.8163 13 6 -0.6041 6.0903 -2.9376 14 7 -1.2688 6.4471 -3.7869 15 6 3.0249 1.9668 -2.1517 16 6 4.0862 2.1263 -1.0347 17 7 3.5033 1.4555 0.1417 18 6 4.1971 0.9391 1.1754 19 8 3.6089 0.4907 2.1367 20 6 5.7034 0.9190 1.1369 21 16 6.3359 0.1698 2.6583 22 6 8.0682 0.2733 2.3532 23 1 8.4293 0.7074 1.4326 24 6 8.9685 -0.2041 3.2954 25 7 8.5284 -0.7337 4.4172 26 14 10.8051 -0.0937 2.9722 27 1 11.0376 0.5388 1.6489 28 1 11.4459 0.7253 4.0323 29 1 11.3916 -1.4580 2.9782 30 1 -0.3634 -1.0229 0.0989 31 1 -0.3633 0.5970 0.8365 32 1 -0.3634 0.4259 -0.9352 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.7229 4.0073 -0.3776 36 1 2.1828 6.1099 -1.0012 37 1 2.0697 6.3298 -2.7640 38 1 1.3012 7.5044 -1.6698 39 1 3.1220 2.7550 -2.8983 40 1 3.0899 0.9821 -2.6146 41 1 4.2584 3.1815 -0.8228 42 1 5.0182 1.6414 -1.3248 43 1 6.0372 0.3362 0.2785 44 1 6.0783 1.9390 1.0515 45 1 9.1576 -1.0669 5.0759 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573297291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:04 Heat of formation + Delta-G solvation = -49.307283 kcal Electronic energy + Delta-G solvation = -26943.565584 eV Core-core repulsion = 23087.270545 eV Total energy + Delta-G solvation = -3856.295039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.04671 -39.81751 -37.69448 -36.87253 -34.67988 -33.77012 -33.50246 -32.47443 -30.85231 -29.25952 -27.57046 -25.86870 -25.52627 -23.95710 -23.14936 -21.47141 -20.70044 -19.30410 -18.52844 -17.79070 -17.74795 -16.83546 -16.68304 -15.98735 -15.43910 -15.14639 -14.84688 -14.74054 -14.54989 -14.13022 -14.00017 -13.90537 -13.62822 -13.47619 -13.39830 -13.15585 -13.04487 -12.84647 -12.62381 -12.38135 -12.11931 -12.09762 -11.93896 -11.88595 -11.86585 -11.61964 -11.33505 -11.10874 -11.06252 -10.80171 -10.70114 -10.36426 -9.85272 -9.59859 -9.44372 -9.11835 -8.63771 -8.28517 -6.55477 -6.26373 -3.97277 1.96859 2.00436 2.36318 2.73959 2.84438 2.96774 3.18168 3.22150 3.27565 3.29796 3.53404 4.00141 4.13412 4.16158 4.21209 4.25190 4.41254 4.68394 4.74798 4.91193 4.93887 4.98622 5.03349 5.04939 5.09152 5.19458 5.28411 5.32586 5.41944 5.46878 5.54282 5.60667 5.62327 5.68937 5.84256 5.90722 5.98217 6.05858 6.07647 6.14311 6.43984 6.85109 7.12333 7.54366 7.56191 7.59863 8.30759 8.46253 9.19292 10.81022 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018098 B = 0.002350 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.756915 B =11913.782333 C =12835.026492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C 0.136 3.864 4 H 0.082 0.918 5 C 0.133 3.867 6 H 0.116 0.884 7 N -0.713 5.713 8 C 0.526 3.474 9 O -0.525 6.525 10 C -0.012 4.012 11 H 0.143 0.857 12 C -0.145 4.145 13 C 0.220 3.780 14 N -0.411 5.411 15 C -0.142 4.142 16 C 0.099 3.901 17 N -0.625 5.625 18 C 0.551 3.449 19 O -0.510 6.510 20 C -0.148 4.148 21 S -0.060 6.060 22 C -0.535 4.535 23 H 0.073 0.927 24 C 0.073 3.927 25 N -0.867 5.867 26 Si 0.918 3.082 27 H -0.272 1.272 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.406 0.594 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.037 11.506 -11.890 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C 0.032 3.968 4 H 0.100 0.900 5 C 0.028 3.972 6 H 0.134 0.866 7 N -0.365 5.365 8 C 0.310 3.690 9 O -0.400 6.400 10 C -0.036 4.036 11 H 0.160 0.840 12 C -0.204 4.204 13 C -0.099 4.099 14 N -0.086 5.086 15 C -0.181 4.181 16 C -0.024 4.024 17 N -0.363 5.363 18 C 0.340 3.660 19 O -0.384 6.384 20 C -0.298 4.298 21 S 0.166 5.834 22 C -0.683 4.683 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.502 5.502 26 Si 0.745 3.255 27 H -0.196 1.196 28 H -0.205 1.205 29 H -0.206 1.206 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.242 0.758 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.131 10.825 -12.189 22.934 hybrid contribution 2.387 0.675 -0.600 2.552 sum -13.744 11.500 -12.789 22.016 Atomic orbital electron populations 1.21774 0.95104 1.02204 1.01621 1.21841 0.96054 0.95418 1.04058 1.21757 0.81833 0.97174 0.96019 0.90030 1.22182 0.98551 0.80777 0.95648 0.86649 1.45891 1.51332 1.11811 1.27449 1.19977 0.78471 0.87675 0.82922 1.90803 1.52147 1.67723 1.29320 1.18851 0.96225 0.93361 0.95197 0.83985 1.21829 0.93676 1.00397 1.04481 1.28057 0.93875 0.93861 0.94104 1.81214 1.09334 1.08533 1.09486 1.23261 0.93735 1.03855 0.97274 1.22323 0.97551 0.97639 0.84927 1.48638 1.05872 1.60087 1.21680 1.20021 0.89151 0.76269 0.80565 1.90710 1.70849 1.45019 1.31804 1.23521 0.93077 1.05464 1.07741 1.85405 1.03821 1.77841 1.16296 1.22885 0.91004 1.46946 1.07446 0.90891 1.24993 0.99638 0.94497 0.94461 1.70023 1.35093 1.37594 1.07511 0.86122 0.82974 0.78036 0.78393 1.19615 1.20547 1.20557 0.92236 0.92501 0.92777 0.91524 0.89437 0.75815 0.89654 0.90875 0.90066 0.89395 0.89282 0.91318 0.89973 0.89274 0.89368 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.67 37.16 0.36 -0.94 16 2 C -0.13 -1.44 5.43 -26.73 -0.15 -1.58 16 3 C 0.14 1.33 2.54 -66.95 -0.17 1.16 16 4 H 0.08 0.81 8.00 -51.93 -0.42 0.39 16 5 C 0.13 0.99 2.71 -65.94 -0.18 0.81 16 6 H 0.12 0.97 5.77 -51.93 -0.30 0.67 16 7 N -0.71 -3.81 4.99 -51.88 -0.26 -4.07 16 8 C 0.53 3.57 7.14 -10.99 -0.08 3.49 16 9 O -0.52 -5.99 15.67 5.56 0.09 -5.90 16 10 C -0.01 -0.05 3.10 -94.56 -0.29 -0.34 16 11 H 0.14 0.10 8.14 -51.93 -0.42 -0.32 16 12 C -0.15 -0.29 9.04 37.16 0.34 0.04 16 13 C 0.22 1.86 13.88 -20.76 -0.29 1.57 16 14 N -0.41 -4.82 18.54 42.15 0.78 -4.04 16 15 C -0.14 -1.02 6.79 -24.42 -0.17 -1.19 16 16 C 0.10 0.85 6.71 -2.52 -0.02 0.83 16 17 N -0.62 -7.42 3.08 -163.02 -0.50 -7.93 16 18 C 0.55 9.43 7.58 -10.98 -0.08 9.35 16 19 O -0.51 -10.65 14.88 5.55 0.08 -10.56 16 20 C -0.15 -2.79 5.08 36.00 0.18 -2.60 16 21 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 22 C -0.53 -14.71 9.50 30.94 0.29 -14.42 16 23 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 24 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 25 N -0.87 -25.51 13.22 55.49 0.73 -24.77 16 26 Si 0.92 20.83 29.55 -169.99 -5.02 15.81 16 27 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.43 6.73 -51.93 -0.35 0.08 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.23 6.71 -51.93 -0.35 0.88 16 35 H 0.41 1.30 8.03 -40.82 -0.33 0.98 16 36 H 0.08 0.03 7.56 -51.93 -0.39 -0.36 16 37 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.73 7.47 -51.93 -0.39 0.34 16 43 H 0.09 1.58 7.96 -51.92 -0.41 1.17 16 44 H 0.09 1.53 8.14 -51.91 -0.42 1.11 16 45 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 392.28 15.07 5.91 5.91 Total: -1.00 -37.31 392.28 -7.45 -44.76 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -6.71 Total: -3.54 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -0.34 Total: -1.89 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.75 Total: -40.81 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: 0.17 Total: -16.47 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.31 -7.45 -44.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573297291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.551 kcal (2) G-P(sol) polarization free energy of solvation -37.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds