Wall clock time and date at job start Wed Apr 1 2020 00:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47186 * 2 1 4 4 H 1.08995 * 109.99750 * 53.02325 * 3 2 1 5 5 C 1.54321 * 109.88166 * 291.92822 * 3 2 1 6 6 H 1.09000 * 110.71840 * 21.31342 * 5 3 2 7 7 N 1.46495 * 110.72207 * 144.41262 * 5 3 2 8 8 C 1.34773 * 120.00244 * 205.00019 * 7 5 3 9 9 O 1.21272 * 120.00137 * 0.02562 * 8 7 5 10 10 C 1.50703 * 119.99891 * 179.97438 * 8 7 5 11 11 H 1.08997 * 109.47268 * 299.99715 * 10 8 7 12 12 C 1.52999 * 109.47226 * 60.00035 * 10 8 7 13 13 C 1.47203 * 109.47073 * 179.97438 * 10 8 7 14 14 N 7.98368 * 69.47827 * 329.57056 * 2 1 3 15 15 C 1.55448 * 102.96943 * 262.77715 * 5 3 2 16 16 C 1.54912 * 101.45086 * 324.51535 * 15 5 3 17 17 N 1.47019 * 109.88216 * 174.11928 * 3 2 1 18 18 C 1.34783 * 125.65145 * 300.50123 * 17 3 2 19 19 O 1.21285 * 119.99379 * 354.85753 * 18 17 3 20 20 C 1.50696 * 120.00215 * 174.86220 * 18 17 3 21 21 S 1.81002 * 109.47214 * 179.97438 * 20 18 17 22 22 C 1.76198 * 100.00186 * 180.02562 * 21 20 18 23 23 H 1.08000 * 119.99810 * 359.97438 * 22 21 20 24 24 C 1.38793 * 119.99762 * 180.02562 * 22 21 20 25 25 N 1.31631 * 120.00331 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99778 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46812 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.46940 * 119.99742 * 26 24 22 29 29 H 1.48502 * 109.46923 * 240.00006 * 26 24 22 30 30 H 1.09003 * 109.47479 * 185.52381 * 1 2 3 31 31 H 1.09005 * 109.46974 * 305.51326 * 1 2 3 32 32 H 1.09000 * 109.47270 * 65.51466 * 1 2 3 33 33 H 1.08999 * 109.46751 * 240.00090 * 2 1 3 34 34 H 1.08996 * 109.47553 * 120.00105 * 2 1 3 35 35 H 0.97006 * 120.00018 * 24.99762 * 7 5 3 36 36 H 1.08999 * 109.47125 * 299.99825 * 12 10 8 37 37 H 1.09003 * 109.47113 * 60.00080 * 12 10 8 38 38 H 1.08995 * 109.47482 * 179.97438 * 12 10 8 39 39 H 1.09004 * 111.11675 * 206.46885 * 15 5 3 40 40 H 1.08997 * 111.01804 * 82.52213 * 15 5 3 41 41 H 1.08992 * 110.37104 * 278.11734 * 16 15 5 42 42 H 1.08998 * 110.36815 * 155.89885 * 16 15 5 43 43 H 1.08999 * 109.47446 * 299.99837 * 20 18 17 44 44 H 1.09007 * 109.47061 * 60.00052 * 20 18 17 45 45 H 0.97001 * 120.00066 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5834 1.9993 0.8182 5 6 1.7040 2.1180 -1.3462 6 1 0.8845 1.5995 -1.8439 7 7 1.3764 3.5322 -1.1491 8 6 0.5938 4.1731 -2.0397 9 8 0.1603 3.5791 -3.0039 10 6 0.2565 5.6278 -1.8365 11 1 -0.2681 5.7503 -0.8889 12 6 1.5452 6.4522 -1.8163 13 6 -0.6041 6.0903 -2.9376 14 7 -1.2688 6.4471 -3.7869 15 6 3.0249 1.9668 -2.1517 16 6 4.0862 2.1263 -1.0347 17 7 3.5033 1.4555 0.1417 18 6 4.1971 0.9391 1.1754 19 8 3.6089 0.4907 2.1367 20 6 5.7034 0.9190 1.1369 21 16 6.3359 0.1698 2.6583 22 6 8.0682 0.2733 2.3532 23 1 8.4293 0.7074 1.4326 24 6 8.9685 -0.2041 3.2954 25 7 8.5284 -0.7337 4.4172 26 14 10.8051 -0.0937 2.9722 27 1 11.0376 0.5388 1.6489 28 1 11.4459 0.7253 4.0323 29 1 11.3916 -1.4580 2.9782 30 1 -0.3634 -1.0229 0.0989 31 1 -0.3633 0.5970 0.8365 32 1 -0.3634 0.4259 -0.9352 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.7229 4.0073 -0.3776 36 1 2.1828 6.1099 -1.0012 37 1 2.0697 6.3298 -2.7640 38 1 1.3012 7.5044 -1.6698 39 1 3.1220 2.7550 -2.8983 40 1 3.0899 0.9821 -2.6146 41 1 4.2584 3.1815 -0.8228 42 1 5.0182 1.6414 -1.3248 43 1 6.0372 0.3362 0.2785 44 1 6.0783 1.9390 1.0515 45 1 9.1576 -1.0669 5.0759 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573297291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:03 Heat of formation + Delta-G solvation = -75.740693 kcal Electronic energy + Delta-G solvation = -26944.711822 eV Core-core repulsion = 23087.270545 eV Total energy + Delta-G solvation = -3857.441278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.79352 -40.69636 -38.77061 -37.60090 -35.35189 -34.62340 -34.56229 -34.04232 -31.78478 -30.47457 -28.40028 -27.62231 -26.17738 -24.79759 -23.91822 -22.21972 -21.38259 -20.50461 -19.52022 -19.11335 -18.25918 -18.00275 -17.51235 -16.86211 -16.64966 -16.45731 -16.30308 -15.78002 -15.44006 -15.16639 -14.84954 -14.70571 -14.57495 -14.35239 -14.23895 -14.11281 -14.06813 -13.72345 -13.42022 -13.24643 -13.13272 -12.90538 -12.78294 -12.77401 -12.68248 -12.61576 -12.52748 -12.40760 -12.37185 -12.07381 -11.68701 -11.52388 -11.13945 -10.95547 -10.82147 -10.23911 -10.17142 -9.66928 -8.63715 -8.32824 -6.10047 1.26575 1.40797 1.42807 1.46367 1.48341 1.58382 1.62868 1.74592 2.08512 2.26179 2.29634 2.82369 3.01663 3.21668 3.38816 3.53957 3.66274 3.87635 3.97613 3.99198 4.05757 4.20091 4.22047 4.27841 4.34247 4.41455 4.51266 4.59786 4.61279 4.80638 4.86391 4.89683 4.92420 4.98743 5.07549 5.14704 5.20606 5.29151 5.32911 5.40256 5.44535 5.54715 6.22137 6.35791 6.42757 6.55362 7.09115 7.11886 7.18287 8.76362 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018098 B = 0.002350 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.756915 B =11913.782333 C =12835.026492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.137 3.863 4 H 0.085 0.915 5 C 0.145 3.855 6 H 0.111 0.889 7 N -0.698 5.698 8 C 0.531 3.469 9 O -0.574 6.574 10 C -0.004 4.004 11 H 0.186 0.814 12 C -0.143 4.143 13 C 0.242 3.758 14 N -0.478 5.478 15 C -0.133 4.133 16 C 0.091 3.909 17 N -0.612 5.612 18 C 0.552 3.448 19 O -0.558 6.558 20 C -0.121 4.121 21 S -0.150 6.150 22 C -0.542 4.542 23 H 0.083 0.917 24 C 0.013 3.987 25 N -0.911 5.911 26 Si 0.996 3.004 27 H -0.256 1.256 28 H -0.274 1.274 29 H -0.276 1.276 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.421 0.579 36 H 0.110 0.890 37 H 0.061 0.939 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.103 0.897 44 H 0.109 0.891 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.192 13.465 -13.185 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.034 3.966 4 H 0.102 0.898 5 C 0.039 3.961 6 H 0.129 0.871 7 N -0.350 5.350 8 C 0.317 3.683 9 O -0.452 6.452 10 C -0.028 4.028 11 H 0.202 0.798 12 C -0.202 4.202 13 C -0.076 4.076 14 N -0.154 5.154 15 C -0.172 4.172 16 C -0.031 4.031 17 N -0.347 5.347 18 C 0.340 3.660 19 O -0.435 6.435 20 C -0.272 4.272 21 S 0.078 5.922 22 C -0.690 4.690 23 H 0.101 0.899 24 C -0.192 4.192 25 N -0.548 5.548 26 Si 0.818 3.182 27 H -0.179 1.179 28 H -0.200 1.200 29 H -0.202 1.202 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.259 0.741 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.288 12.828 -13.511 24.101 hybrid contribution 2.033 0.077 -0.260 2.051 sum -13.255 12.905 -13.771 23.062 Atomic orbital electron populations 1.21719 0.93486 1.02451 1.02367 1.21780 0.97479 0.95748 1.02269 1.21858 0.80212 0.96963 0.97597 0.89756 1.21939 0.98653 0.81726 0.93809 0.87091 1.45711 1.50752 1.10882 1.27681 1.20331 0.77527 0.88452 0.82033 1.90803 1.54027 1.68993 1.31402 1.19164 0.97001 0.91413 0.95228 0.79757 1.21909 0.92532 1.00813 1.04919 1.28888 0.92829 0.92173 0.93708 1.81228 1.11738 1.10802 1.11671 1.23228 0.92626 1.04488 0.96894 1.22658 0.97862 0.98750 0.83785 1.48483 1.06978 1.58269 1.20990 1.19644 0.88445 0.76622 0.81283 1.90699 1.71308 1.47486 1.34045 1.23326 0.94482 1.05832 1.03607 1.85579 1.04904 1.79550 1.22199 1.23214 0.91277 1.46736 1.07808 0.89928 1.26099 1.05106 0.93890 0.94068 1.70185 1.36973 1.38861 1.08746 0.84937 0.76124 0.78171 0.78920 1.17943 1.19952 1.20198 0.92259 0.92312 0.91442 0.91230 0.93262 0.74081 0.87095 0.92002 0.88883 0.87931 0.89361 0.88590 0.89858 0.87913 0.87299 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.67 71.98 0.70 -1.65 16 2 C -0.13 -2.80 5.43 30.59 0.17 -2.64 16 3 C 0.14 2.43 2.54 45.34 0.12 2.54 16 4 H 0.08 1.50 8.00 -2.39 -0.02 1.48 16 5 C 0.14 1.74 2.71 46.28 0.13 1.87 16 6 H 0.11 1.59 5.77 -2.39 -0.01 1.58 16 7 N -0.70 -4.93 4.99 -436.46 -2.18 -7.11 16 8 C 0.53 5.60 7.14 87.66 0.63 6.23 16 9 O -0.57 -12.07 15.67 -3.00 -0.05 -12.12 16 10 C 0.00 -0.02 3.10 -13.34 -0.04 -0.06 16 11 H 0.19 -0.64 8.14 -2.39 -0.02 -0.66 16 12 C -0.14 -0.01 9.04 71.98 0.65 0.64 16 13 C 0.24 3.71 13.88 89.44 1.24 4.95 16 14 N -0.48 -11.14 18.54 20.01 0.37 -10.77 16 15 C -0.13 -1.49 6.79 32.09 0.22 -1.27 16 16 C 0.09 1.25 6.71 86.85 0.58 1.83 16 17 N -0.61 -13.39 3.08 -788.05 -2.43 -15.82 16 18 C 0.55 18.63 7.58 87.65 0.66 19.29 16 19 O -0.56 -23.90 14.88 -3.05 -0.05 -23.95 16 20 C -0.12 -4.49 5.08 71.23 0.36 -4.12 16 21 S -0.15 -7.97 20.57 -56.49 -1.16 -9.13 16 22 C -0.54 -29.90 9.50 67.95 0.65 -29.25 16 23 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 24 C 0.01 0.73 5.49 84.86 0.47 1.19 16 25 N -0.91 -54.72 13.22 21.65 0.29 -54.44 16 26 Si 1.00 42.36 29.55 68.60 2.03 44.39 16 27 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 29 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.07 0.94 6.73 -2.39 -0.02 0.93 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.05 1.44 6.71 -2.39 -0.02 1.42 16 35 H 0.42 0.78 8.03 -92.70 -0.74 0.04 16 36 H 0.11 -0.51 7.56 -2.39 -0.02 -0.53 16 37 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.08 1.20 7.47 -2.39 -0.02 1.18 16 43 H 0.10 3.50 7.96 -2.40 -0.02 3.48 16 44 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 45 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -86.74 392.28 3.61 -83.13 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 0.27 Total: 6.25 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 6.52 Total: -0.44 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -3.95 Total: -88.13 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.09 Total: -36.07 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.16 Total: -9.13 kcal Total: -86.74 3.61 -83.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573297291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.391 kcal (2) G-P(sol) polarization free energy of solvation -86.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds