Wall clock time and date at job start Wed Apr 1 2020 00:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47017 * 2 1 4 4 C 1.52996 * 109.47301 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47059 * 179.97438 * 4 3 2 6 6 C 1.38606 * 119.99817 * 179.72388 * 5 4 3 7 7 N 1.29687 * 124.94848 * 179.97438 * 6 5 4 8 8 C 1.32134 * 116.86439 * 179.81587 * 7 6 5 9 9 C 1.50697 * 122.70724 * 180.22237 * 8 7 6 10 10 C 1.50701 * 109.47621 * 305.26784 * 9 8 7 11 11 O 1.21285 * 119.99459 * 0.02562 * 10 9 8 12 12 N 1.34764 * 120.00193 * 180.02562 * 10 9 8 13 13 C 1.47073 * 136.05847 * 359.62213 * 12 10 9 14 14 C 1.53757 * 87.88925 * 152.96967 * 13 12 10 15 15 O 1.42905 * 114.39536 * 272.68300 * 14 13 12 16 16 C 1.50694 * 114.27016 * 139.79242 * 14 13 12 17 17 H 1.07996 * 120.00377 * 266.47625 * 16 14 13 18 18 C 1.37878 * 119.99973 * 86.47282 * 16 14 13 19 19 N 1.31516 * 119.99996 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00182 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46876 * 60.00680 * 20 18 16 22 22 H 1.48498 * 109.47108 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47335 * 300.00652 * 20 18 16 24 24 C 1.47073 * 136.05956 * 180.02562 * 12 10 9 25 25 C 1.33325 * 114.57740 * 0.47264 * 8 7 6 26 26 S 1.70965 * 124.94987 * 0.30550 * 6 5 4 27 27 H 1.08998 * 109.47269 * 299.99719 * 1 2 3 28 28 H 1.09003 * 109.46642 * 60.00392 * 1 2 3 29 29 H 1.09003 * 109.47061 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47421 * 240.00005 * 2 1 3 31 31 H 1.09002 * 109.47073 * 119.99290 * 2 1 3 32 32 H 1.09004 * 109.47038 * 59.99615 * 3 2 1 33 33 H 1.09000 * 109.46939 * 300.00268 * 3 2 1 34 34 H 1.09004 * 109.47066 * 60.00027 * 4 3 2 35 35 H 1.08994 * 109.46974 * 300.00175 * 4 3 2 36 36 H 0.97001 * 120.00384 * 0.02562 * 5 4 3 37 37 H 1.08998 * 109.46790 * 65.27160 * 9 8 7 38 38 H 1.09003 * 109.46999 * 185.26827 * 9 8 7 39 39 H 1.08996 * 113.46789 * 267.70259 * 13 12 10 40 40 H 1.08997 * 113.46203 * 38.14250 * 13 12 10 41 41 H 0.96699 * 113.99346 * 273.58402 * 15 14 13 42 42 H 0.96998 * 120.00221 * 179.97438 * 19 18 16 43 43 H 1.09006 * 113.46223 * 321.85921 * 24 12 10 44 44 H 1.08996 * 113.46960 * 92.29948 * 24 12 10 45 45 H 1.07994 * 125.94870 * 179.75065 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0000 6 6 5.4209 3.0772 0.0062 7 7 5.9570 4.2580 0.0058 8 6 7.2771 4.3145 0.0161 9 6 8.0365 5.6161 0.0219 10 6 7.5902 6.4634 -1.1417 11 8 6.7389 6.0510 -1.9007 12 7 8.1370 7.6792 -1.3388 13 6 9.1501 8.5065 -0.6662 14 6 9.4312 9.1671 -2.0258 15 8 10.3994 8.4843 -2.8249 16 6 9.6588 10.6551 -1.9562 17 1 8.8336 11.3353 -2.1066 18 6 10.9208 11.1482 -1.7005 19 7 11.9259 10.3200 -1.5177 20 14 11.2032 12.9928 -1.6149 21 1 10.3658 13.5721 -0.5338 22 1 12.6356 13.2615 -1.3299 23 1 10.8327 13.6111 -2.9132 24 6 7.9783 8.7658 -2.3172 25 6 7.8829 3.1268 0.0157 26 16 6.6399 1.8784 0.0075 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9337 0.9287 -0.8891 35 1 3.9329 0.9289 0.8908 36 1 3.4279 3.5611 -0.0003 37 1 7.8410 6.1466 0.9538 38 1 9.1042 5.4142 -0.0641 39 1 8.7314 9.1916 0.0709 40 1 9.9916 7.9323 -0.2787 41 1 11.3133 8.7395 -2.6388 42 1 12.8137 10.6668 -1.3381 43 1 7.8215 8.4125 -3.3365 44 1 7.2510 9.5192 -2.0150 45 1 8.9498 2.9593 0.0193 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001616733394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:44 Heat of formation + Delta-G solvation = -28.353239 kcal Electronic energy + Delta-G solvation = -26111.488300 eV Core-core repulsion = 22256.101897 eV Total energy + Delta-G solvation = -3855.386403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 3.66 seconds Orbital eigenvalues (eV) -41.42382 -40.62527 -38.94489 -37.93736 -35.85274 -35.26174 -34.10417 -32.73594 -30.73628 -29.47683 -28.67146 -26.96066 -26.74099 -24.94414 -23.92721 -22.38586 -21.95943 -20.70092 -20.01323 -19.31574 -18.80832 -17.92588 -17.41483 -17.18805 -16.88141 -16.57954 -16.41031 -16.13158 -15.92361 -15.62476 -15.01932 -14.93701 -14.60226 -14.45376 -14.35863 -14.02247 -13.89978 -13.72515 -13.38734 -13.35493 -13.18197 -12.77644 -12.74777 -12.62899 -12.35667 -12.20966 -12.15013 -12.07350 -11.96594 -11.56715 -11.38978 -11.16988 -10.87643 -10.61881 -10.48702 -10.19861 -10.03109 -9.53818 -8.69423 -8.25543 -6.42454 0.04950 0.25766 0.79916 1.49829 1.51818 1.59115 1.70585 1.79055 2.04430 2.21597 2.43027 2.96482 3.46663 3.63611 3.76264 3.87820 3.95691 4.10239 4.16629 4.19061 4.35826 4.39728 4.48292 4.50722 4.53324 4.60041 4.63307 4.76127 4.83353 4.87528 4.91593 4.93536 4.95094 4.99840 5.14178 5.23764 5.27472 5.33244 5.44234 5.69713 5.74547 5.93371 6.32551 6.62694 6.93049 7.07766 7.22372 7.31702 7.51895 8.80481 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027749 B = 0.001914 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.788886 B =14622.762163 C =15231.998085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.123 4.123 4 C 0.120 3.880 5 N -0.695 5.695 6 C 0.298 3.702 7 N -0.567 5.567 8 C 0.111 3.889 9 C -0.052 4.052 10 C 0.534 3.466 11 O -0.583 6.583 12 N -0.642 5.642 13 C 0.087 3.913 14 C 0.220 3.780 15 O -0.586 6.586 16 C -0.554 4.554 17 H 0.073 0.927 18 C 0.034 3.966 19 N -0.916 5.916 20 Si 0.970 3.030 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.276 1.276 24 C 0.106 3.894 25 C -0.303 4.303 26 S 0.138 5.862 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.410 0.590 37 H 0.120 0.880 38 H 0.128 0.872 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.390 0.610 42 H 0.277 0.723 43 H 0.047 0.953 44 H 0.099 0.901 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.372 -19.415 8.523 25.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.161 4.161 4 C -0.004 4.004 5 N -0.336 5.336 6 C -0.074 4.074 7 N -0.293 5.293 8 C -0.021 4.021 9 C -0.094 4.094 10 C 0.325 3.675 11 O -0.464 6.464 12 N -0.376 5.376 13 C -0.036 4.036 14 C 0.178 3.822 15 O -0.399 6.399 16 C -0.592 4.592 17 H 0.091 0.909 18 C -0.167 4.167 19 N -0.557 5.557 20 Si 0.795 3.205 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.201 1.201 24 C -0.017 4.017 25 C -0.445 4.445 26 S 0.385 5.615 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.248 0.752 37 H 0.138 0.862 38 H 0.146 0.854 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.246 0.754 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.117 0.883 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -14.657 -21.007 7.949 26.820 hybrid contribution 0.939 2.507 0.019 2.678 sum -13.718 -18.500 7.967 24.370 Atomic orbital electron populations 1.21770 0.95200 1.02220 1.01923 1.21424 0.96385 0.94794 1.03051 1.21737 0.91863 0.99109 1.03370 1.21750 0.96205 0.79979 1.02418 1.44142 0.99640 1.09578 1.80274 1.23837 0.92676 0.92229 0.98641 1.66084 1.12080 1.24269 1.26874 1.19248 0.87677 0.95048 1.00086 1.20155 1.01024 0.90785 0.97458 1.20495 0.80183 0.80269 0.86534 1.90633 1.34029 1.72582 1.49143 1.49802 1.41623 1.14474 1.31681 1.24038 0.88856 0.91090 0.99567 1.19846 0.85145 0.90065 0.87111 1.86035 1.21614 1.68086 1.64150 1.21623 0.95850 0.91266 1.50475 0.90932 1.25745 0.95282 1.02987 0.92638 1.69311 1.01431 1.36519 1.48392 0.85418 0.77215 0.79139 0.78720 1.19207 1.20657 1.20132 1.23294 0.98629 0.87165 0.92567 1.26535 1.05020 0.93452 1.19452 1.83268 0.95345 1.09244 1.73635 0.92576 0.92898 0.91942 0.91300 0.90851 0.90629 0.91264 0.91414 0.90536 0.75243 0.86170 0.85388 0.88886 0.91210 0.75441 0.91287 0.93427 0.88350 0.78590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 71.98 0.71 -0.49 16 2 C -0.12 -0.93 5.93 30.60 0.18 -0.75 16 3 C -0.12 -1.24 5.33 30.59 0.16 -1.08 16 4 C 0.12 1.63 5.53 86.38 0.48 2.11 16 5 N -0.70 -14.88 5.71 -351.02 -2.01 -16.88 16 6 C 0.30 8.38 8.24 179.32 1.48 9.85 16 7 N -0.57 -20.07 9.72 -189.86 -1.85 -21.92 16 8 C 0.11 3.66 5.64 41.40 0.23 3.90 16 9 C -0.05 -1.72 6.02 29.10 0.18 -1.54 16 10 C 0.53 23.05 8.04 87.66 0.71 23.76 16 11 O -0.58 -29.47 16.21 -3.04 -0.05 -29.52 16 12 N -0.64 -28.10 3.69 -858.10 -3.16 -31.26 16 13 C 0.09 3.70 7.86 83.27 0.65 4.35 16 14 C 0.22 10.69 1.58 -11.11 -0.02 10.68 16 15 O -0.59 -30.95 13.55 -148.98 -2.02 -32.97 16 16 C -0.55 -27.70 8.70 25.60 0.22 -27.48 16 17 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 18 C 0.03 1.66 5.39 84.65 0.46 2.12 16 19 N -0.92 -45.70 11.01 21.45 0.24 -45.47 16 20 Si 0.97 39.07 29.54 68.60 2.03 41.09 16 21 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 22 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 24 C 0.11 4.87 8.02 83.19 0.67 5.54 16 25 C -0.30 -8.08 11.04 66.71 0.74 -7.35 16 26 S 0.14 3.10 22.32 -56.49 -1.26 1.84 16 27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 0.73 8.14 -2.38 -0.02 0.72 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.41 8.71 8.60 -92.71 -0.80 7.91 16 37 H 0.12 3.50 8.14 -2.39 -0.02 3.48 16 38 H 0.13 3.59 8.03 -2.39 -0.02 3.57 16 39 H 0.09 3.69 8.10 -2.39 -0.02 3.67 16 40 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.39 20.64 6.32 -74.06 -0.47 20.17 16 42 H 0.28 13.09 8.31 -92.71 -0.77 12.32 16 43 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 44 H 0.10 4.12 8.10 -2.39 -0.02 4.10 16 45 H 0.20 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -67.18 391.35 -1.49 -68.66 By element: Atomic # 1 Polarization: 43.03 SS G_CDS: -0.25 Total: 42.77 kcal Atomic # 6 Polarization: 16.79 SS G_CDS: 6.85 Total: 23.64 kcal Atomic # 7 Polarization: -108.75 SS G_CDS: -6.78 Total: -115.53 kcal Atomic # 8 Polarization: -60.42 SS G_CDS: -2.07 Total: -62.49 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.09 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -1.26 Total: 1.84 kcal Total: -67.18 -1.49 -68.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001616733394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.312 kcal (2) G-P(sol) polarization free energy of solvation -67.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.66 seconds