Wall clock time and date at job start Wed Apr 1 2020 01:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46859 * 337.20112 * 3 2 1 5 5 C 1.34777 * 120.00158 * 269.99874 * 4 3 2 6 6 O 1.21284 * 119.99969 * 180.02562 * 5 4 3 7 7 C 1.50691 * 119.99802 * 0.02562 * 5 4 3 8 8 S 1.81006 * 109.47110 * 180.02562 * 7 5 4 9 9 C 1.76203 * 100.00146 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99811 * 0.02562 * 9 8 7 11 11 C 1.38794 * 119.99823 * 179.97438 * 9 8 7 12 12 N 1.31624 * 120.00444 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99881 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.46936 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46956 * 119.99895 * 13 11 9 16 16 H 1.48488 * 109.47339 * 240.00098 * 13 11 9 17 17 C 1.46506 * 119.99767 * 90.00230 * 4 3 2 18 18 C 1.53119 * 109.51978 * 239.99452 * 17 4 3 19 19 C 1.53039 * 109.27478 * 182.37658 * 18 17 4 20 20 N 1.46852 * 109.52336 * 59.18093 * 19 18 17 21 21 C 1.46900 * 111.00118 * 174.15791 * 20 19 18 22 22 C 1.50697 * 109.47237 * 293.61170 * 21 20 19 23 23 N 1.34774 * 120.00462 * 173.73265 * 22 21 20 24 24 O 1.21281 * 120.00181 * 353.73194 * 22 21 20 25 25 C 1.46845 * 111.19897 * 298.25829 * 20 19 18 26 26 C 1.53038 * 109.52423 * 61.74130 * 25 20 19 27 27 H 4.40639 * 5.51433 * 180.02562 * 4 1 2 28 28 H 1.08994 * 109.46463 * 217.20048 * 3 2 1 29 29 H 1.08999 * 109.46757 * 97.20302 * 3 2 1 30 30 H 1.08998 * 109.47370 * 300.00207 * 7 5 4 31 31 H 1.09002 * 109.47440 * 60.00052 * 7 5 4 32 32 H 0.96999 * 120.00726 * 180.02562 * 12 11 9 33 33 H 1.08994 * 109.52548 * 0.12666 * 17 4 3 34 34 H 1.08994 * 109.50056 * 62.44287 * 18 17 4 35 35 H 1.08998 * 109.50523 * 302.31571 * 18 17 4 36 36 H 1.09003 * 109.46821 * 299.16986 * 19 18 17 37 37 H 1.09003 * 109.45395 * 179.18930 * 19 18 17 38 38 H 1.08996 * 109.46919 * 173.61386 * 21 20 19 39 39 H 1.08994 * 109.47139 * 53.61230 * 21 20 19 40 40 H 0.97002 * 119.99260 * 359.97438 * 23 22 21 41 41 H 0.96998 * 120.00588 * 180.02562 * 23 22 21 42 42 H 1.09006 * 109.46384 * 181.75671 * 25 20 19 43 43 H 1.09004 * 109.46376 * 301.72164 * 25 20 19 44 44 H 1.08998 * 109.50374 * 180.88473 * 26 25 20 45 45 H 1.09001 * 109.50604 * 60.76106 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.2724 0.5352 5 6 3.3595 -1.4058 1.8574 6 8 3.7647 -2.4596 2.3004 7 6 3.1074 -0.2455 2.7853 8 16 3.5005 -0.7342 4.4832 9 6 3.1265 0.7662 5.3279 10 1 2.7701 1.6228 4.7750 11 6 3.2887 0.8468 6.7040 12 7 3.7225 -0.1972 7.3779 13 14 2.8915 2.4373 7.5997 14 1 2.4248 3.4528 6.6218 15 1 1.8239 2.1880 8.6013 16 1 4.1094 2.9353 8.2879 17 6 3.3795 -2.4006 -0.3669 18 6 2.4953 -3.5825 0.0405 19 6 2.7980 -4.7765 -0.8677 20 7 4.2161 -5.1383 -0.7464 21 6 4.5125 -6.3654 -1.4975 22 6 3.7974 -7.5292 -0.8608 23 7 3.8195 -8.7395 -1.4532 24 8 3.2020 -7.3766 0.1847 25 6 5.0843 -4.0350 -1.1770 26 6 4.8499 -2.8189 -0.2780 27 1 -1.0499 -0.0004 0.0000 28 1 3.0088 0.8194 0.6213 29 1 3.0092 0.1297 -1.0196 30 1 3.7368 0.5956 2.4947 31 1 2.0591 0.0472 2.7245 32 1 3.8356 -0.1410 8.3397 33 1 3.1458 -2.1063 -1.3900 34 1 1.4464 -3.3043 -0.0617 35 1 2.7019 -3.8516 1.0763 36 1 2.5782 -4.5112 -1.9019 37 1 2.1803 -5.6241 -0.5710 38 1 5.5869 -6.5484 -1.4851 39 1 4.1753 -6.2513 -2.5276 40 1 4.2954 -8.8614 -2.2896 41 1 3.3589 -9.4885 -1.0437 42 1 6.1272 -4.3441 -1.1050 43 1 4.8538 -3.7732 -2.2097 44 1 5.4830 -1.9952 -0.6077 45 1 5.0935 -3.0759 0.7528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671456167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:00 Heat of formation + Delta-G solvation = -32.666834 kcal Electronic energy + Delta-G solvation = -27281.386414 eV Core-core repulsion = 23425.812959 eV Total energy + Delta-G solvation = -3855.573455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.54528 -40.58949 -38.83411 -37.03015 -34.68936 -34.59450 -34.38688 -32.98667 -31.80227 -30.66351 -28.54720 -27.73396 -27.24692 -24.39697 -24.13430 -21.74565 -21.32744 -20.43833 -19.75012 -18.91361 -18.30009 -17.96539 -17.53786 -17.42242 -16.89144 -16.70429 -16.36329 -16.21767 -15.78748 -15.49995 -15.16218 -15.07990 -14.79744 -14.50482 -14.46580 -14.35832 -14.05082 -13.81557 -13.64769 -13.17639 -13.12835 -12.94021 -12.89892 -12.62354 -12.51441 -12.05023 -11.75440 -11.69036 -11.67384 -11.43674 -11.17202 -11.07920 -10.88075 -10.57618 -10.52312 -10.25774 -9.81401 -9.14770 -8.67411 -8.34989 -6.13282 1.20392 1.38408 1.40343 1.52057 1.60347 1.72590 1.73161 1.89608 2.26471 2.39459 2.47403 2.98779 3.09020 3.27177 3.50718 3.62282 3.89297 3.92754 4.05338 4.11054 4.20361 4.27662 4.28773 4.33349 4.38672 4.44285 4.46429 4.53611 4.60415 4.61436 4.75213 4.89291 4.99023 5.03193 5.07905 5.33613 5.38789 5.40695 5.73743 5.94079 6.05805 6.18602 6.19246 6.30447 6.60043 6.68189 7.05812 7.20414 7.47060 8.74551 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014290 B = 0.002767 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.004085 B =10117.859652 C =11250.103521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.237 4.237 3 C 0.213 3.787 4 N -0.602 5.602 5 C 0.534 3.466 6 O -0.539 6.539 7 C -0.124 4.124 8 S -0.150 6.150 9 C -0.544 4.544 10 H 0.081 0.919 11 C 0.012 3.988 12 N -0.912 5.912 13 Si 1.000 3.000 14 H -0.257 1.257 15 H -0.274 1.274 16 H -0.271 1.271 17 C 0.158 3.842 18 C -0.129 4.129 19 C 0.075 3.925 20 N -0.555 5.555 21 C 0.040 3.960 22 C 0.504 3.496 23 N -0.839 5.839 24 O -0.583 6.583 25 C 0.072 3.928 26 C -0.135 4.135 27 H 0.240 0.760 28 H 0.108 0.892 29 H 0.143 0.857 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.271 0.729 33 H 0.120 0.880 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.419 0.581 41 H 0.404 0.596 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.349 -7.168 -30.437 31.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.239 4.239 3 C 0.092 3.908 4 N -0.334 5.334 5 C 0.322 3.678 6 O -0.416 6.416 7 C -0.275 4.275 8 S 0.077 5.923 9 C -0.692 4.692 10 H 0.099 0.901 11 C -0.192 4.192 12 N -0.548 5.548 13 Si 0.821 3.179 14 H -0.180 1.180 15 H -0.200 1.200 16 H -0.197 1.197 17 C 0.056 3.944 18 C -0.167 4.167 19 C -0.054 4.054 20 N -0.281 5.281 21 C -0.091 4.091 22 C 0.289 3.711 23 N -0.404 5.404 24 O -0.462 6.462 25 C -0.055 4.055 26 C -0.173 4.173 27 H 0.256 0.744 28 H 0.126 0.874 29 H 0.161 0.839 30 H 0.128 0.872 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.137 0.863 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.146 0.854 39 H 0.115 0.885 40 H 0.250 0.750 41 H 0.235 0.765 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.813 -8.603 -28.504 29.785 hybrid contribution -1.227 1.441 -0.085 1.895 sum -0.414 -7.162 -28.589 29.475 Atomic orbital electron populations 1.25719 0.96969 0.97914 0.99758 1.24046 0.95843 1.02361 1.01602 1.18812 0.83272 0.85506 1.03230 1.48038 1.65747 1.14169 1.05473 1.20042 0.76642 0.88254 0.82887 1.90703 1.45075 1.29595 1.76196 1.23395 1.05142 1.00568 0.98421 1.85617 1.87332 1.21686 0.97652 1.23202 1.51625 0.98727 0.95602 0.90137 1.26149 0.94183 1.01531 0.97371 1.70196 1.44291 1.31780 1.08544 0.84896 0.78160 0.76909 0.77917 1.18016 1.19985 1.19666 1.21253 0.95196 0.84672 0.93289 1.21868 0.98621 0.95384 1.00870 1.21904 0.88909 0.96915 0.97630 1.61361 1.04839 1.04115 1.57805 1.22035 1.02642 0.87772 0.96606 1.21174 0.79840 0.85758 0.84304 1.43712 1.57320 1.10679 1.28717 1.90800 1.45352 1.84800 1.25229 1.22030 0.97405 0.89112 0.96979 1.22002 0.95523 0.98315 1.01480 0.74395 0.87406 0.83921 0.87239 0.88905 0.92000 0.86250 0.92399 0.93613 0.92466 0.92039 0.85375 0.88529 0.74955 0.76496 0.89185 0.91549 0.89420 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.05 19.25 74.32 1.43 -2.62 16 2 C -0.24 -5.57 13.52 31.13 0.42 -5.15 16 3 C 0.21 4.36 5.66 84.57 0.48 4.84 16 4 N -0.60 -16.94 2.39 -807.87 -1.93 -18.87 16 5 C 0.53 21.34 7.10 87.65 0.62 21.97 16 6 O -0.54 -26.46 12.03 -3.04 -0.04 -26.49 16 7 C -0.12 -5.33 4.71 71.23 0.34 -4.99 16 8 S -0.15 -8.76 20.57 -56.49 -1.16 -9.92 16 9 C -0.54 -32.19 9.50 67.95 0.65 -31.54 16 10 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 11 C 0.01 0.72 5.49 84.86 0.47 1.18 16 12 N -0.91 -57.74 13.22 21.65 0.29 -57.45 16 13 Si 1.00 44.91 29.55 68.60 2.03 46.94 16 14 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 17 C 0.16 3.81 2.61 45.07 0.12 3.93 16 18 C -0.13 -3.86 5.33 30.65 0.16 -3.70 16 19 C 0.07 1.81 5.12 86.33 0.44 2.25 16 20 N -0.56 -12.68 4.35 -900.91 -3.92 -16.59 16 21 C 0.04 0.57 5.45 85.56 0.47 1.03 16 22 C 0.50 10.14 7.63 87.66 0.67 10.81 16 23 N -0.84 -8.23 8.87 -173.54 -1.54 -9.77 16 24 O -0.58 -19.76 15.55 -3.03 -0.05 -19.81 16 25 C 0.07 1.26 5.46 86.33 0.47 1.73 16 26 C -0.13 -3.26 5.33 30.65 0.16 -3.10 16 27 H 0.24 3.58 7.80 -4.42 -0.03 3.55 16 28 H 0.11 2.17 6.44 -2.39 -0.02 2.15 16 29 H 0.14 1.67 7.92 -2.39 -0.02 1.65 16 30 H 0.11 4.16 7.40 -2.40 -0.02 4.15 16 31 H 0.09 3.86 7.95 -2.39 -0.02 3.84 16 32 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 33 H 0.12 1.92 7.80 -2.39 -0.02 1.90 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.05 1.92 6.12 -2.39 -0.01 1.91 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 1.81 6.06 -2.39 -0.01 1.80 16 38 H 0.13 1.21 7.98 -2.39 -0.02 1.19 16 39 H 0.10 0.67 8.12 -2.39 -0.02 0.65 16 40 H 0.42 0.59 8.83 -92.71 -0.82 -0.22 16 41 H 0.40 3.92 8.93 -92.71 -0.83 3.09 16 42 H 0.09 1.36 8.01 -2.38 -0.02 1.34 16 43 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.05 1.82 6.10 -2.39 -0.01 1.81 16 Total: -1.00 -94.26 384.16 -0.05 -94.31 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -0.62 Total: 21.02 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 6.89 Total: -3.36 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -7.10 Total: -102.68 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -0.08 Total: -46.30 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.16 Total: -9.92 kcal Total: -94.26 -0.05 -94.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671456167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.641 kcal (2) G-P(sol) polarization free energy of solvation -94.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds