Wall clock time and date at job start Tue Mar 31 2020 23:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46620 * 2 1 4 4 C 1.53002 * 109.47166 * 119.99768 * 2 1 3 5 5 C 1.50696 * 109.46600 * 65.00240 * 4 2 1 6 6 N 1.28653 * 124.72129 * 90.00331 * 5 4 2 7 7 C 1.33555 * 115.76567 * 179.97438 * 6 5 4 8 8 C 1.47265 * 123.13935 * 179.97438 * 7 6 5 9 9 O 1.21633 * 120.00190 * 180.02562 * 8 7 6 10 10 N 1.34780 * 120.00005 * 0.02562 * 8 7 6 11 11 C 1.46504 * 119.99814 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46941 * 180.02562 * 11 10 8 13 13 O 1.42905 * 113.28091 * 313.06421 * 12 11 10 14 14 C 1.53495 * 114.20669 * 180.02562 * 12 11 10 15 15 N 1.47066 * 87.98658 * 220.34216 * 14 12 11 16 16 C 1.36937 * 136.06113 * 206.85859 * 15 14 12 17 17 H 1.07995 * 120.00001 * 0.02562 * 16 15 14 18 18 C 1.38817 * 120.00320 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99557 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99975 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47441 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47001 * 120.00359 * 20 18 16 23 23 H 1.48499 * 109.47209 * 240.00202 * 20 18 16 24 24 C 1.47067 * 87.88528 * 27.11900 * 15 14 12 25 25 C 1.35207 * 113.71964 * 0.24905 * 7 6 5 26 26 S 1.70768 * 124.72151 * 269.99672 * 5 4 2 27 27 H 1.09003 * 109.46755 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47118 * 299.99866 * 1 2 3 29 29 H 1.09000 * 109.47268 * 60.00128 * 1 2 3 30 30 H 1.08993 * 109.46986 * 240.00137 * 2 1 3 31 31 H 1.08999 * 109.46607 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47195 * 299.99916 * 3 2 1 33 33 H 1.08993 * 109.47329 * 60.00348 * 3 2 1 34 34 H 1.09001 * 109.47113 * 305.00516 * 4 2 1 35 35 H 1.08995 * 109.46869 * 184.99908 * 4 2 1 36 36 H 0.96992 * 119.99879 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.47373 * 59.99924 * 11 10 8 38 38 H 1.08997 * 109.47135 * 299.99923 * 11 10 8 39 39 H 0.96696 * 113.99817 * 46.93921 * 13 12 11 40 40 H 1.09005 * 113.46950 * 105.56781 * 14 12 11 41 41 H 1.08998 * 113.47096 * 335.12425 * 14 12 11 42 42 H 0.96999 * 119.99537 * 179.97438 * 19 18 16 43 43 H 1.09007 * 113.46858 * 87.65629 * 24 15 14 44 44 H 1.08993 * 113.47208 * 218.09965 * 24 15 14 45 45 H 1.08004 * 125.58554 * 179.75576 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 -2.1732 1.1888 6 7 2.3511 -3.1066 0.6594 7 6 1.8247 -4.3331 0.7053 8 6 2.4971 -5.5191 0.1486 9 8 1.9647 -6.6104 0.2214 10 7 3.7024 -5.3955 -0.4417 11 6 4.3716 -6.5755 -0.9951 12 6 5.7140 -6.1627 -1.6021 13 8 5.6247 -5.0064 -2.4369 14 6 6.5099 -7.3223 -2.2168 15 7 7.7250 -6.7235 -1.6443 16 6 9.0604 -6.7218 -1.9473 17 1 9.4198 -7.2684 -2.8066 18 6 9.9521 -6.0165 -1.1508 19 7 9.5140 -5.3499 -0.1038 20 14 11.7736 -6.0137 -1.5647 21 1 12.0061 -6.8325 -2.7815 22 1 12.2226 -4.6202 -1.8131 23 1 12.5403 -6.5857 -0.4288 24 6 6.8756 -6.1326 -0.5991 25 6 0.6141 -4.3833 1.3054 26 16 0.1848 -2.8088 1.8137 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6054 -0.2617 2.1370 35 1 3.1263 -0.6443 1.2951 36 1 4.1268 -4.5253 -0.5002 37 1 3.7443 -7.0200 -1.7678 38 1 4.5406 -7.3030 -0.2012 39 1 5.1226 -4.2777 -2.0471 40 1 6.5000 -7.3260 -3.3068 41 1 6.2619 -8.2938 -1.7893 42 1 10.1371 -4.8574 0.4530 43 1 6.7249 -6.7872 0.2593 44 1 7.1765 -5.1247 -0.3136 45 1 0.0171 -5.2728 1.4427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672146639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:15 Heat of formation + Delta-G solvation = 10.325066 kcal Electronic energy + Delta-G solvation = -26890.864995 eV Core-core repulsion = 23037.155808 eV Total energy + Delta-G solvation = -3853.709186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 22.72 seconds Orbital eigenvalues (eV) -40.69436 -39.36654 -38.41540 -36.70582 -35.00157 -33.94140 -32.01545 -31.43284 -28.81886 -28.05606 -27.56732 -26.55256 -24.84085 -24.52298 -22.29349 -21.59738 -20.48154 -19.87099 -19.39770 -18.95179 -17.28963 -16.62383 -16.04620 -15.78268 -15.64271 -15.43369 -15.23801 -14.86681 -14.70174 -13.99994 -13.97298 -13.84937 -13.64000 -13.41676 -13.02279 -12.98791 -12.72705 -12.59293 -12.28321 -12.20833 -12.16035 -11.82520 -11.54354 -11.30778 -11.07165 -11.06264 -10.89923 -10.68730 -10.43254 -10.23892 -10.08098 -9.86208 -9.81153 -9.48488 -9.23637 -9.05632 -8.83859 -8.80324 -6.87959 -5.75100 -3.07055 0.26962 0.94158 1.33569 1.79126 3.17639 3.29112 3.41016 3.45845 3.48696 3.68941 4.39924 4.45335 4.46400 4.52282 4.55647 4.81730 4.91629 5.00733 5.07571 5.09999 5.25179 5.25853 5.26098 5.34122 5.43120 5.47521 5.56749 5.60481 5.64673 5.77529 5.79872 5.89563 5.96229 6.02854 6.31566 6.40796 6.55239 6.55711 7.01887 7.13830 7.19034 7.52431 7.53531 7.97251 8.10724 8.22108 9.04631 9.71441 10.62555 11.42650 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013143 B = 0.002629 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.881365 B =10647.719202 C =11998.727181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.041 4.041 5 C 0.035 3.965 6 N -0.439 5.439 7 C 0.015 3.985 8 C 0.594 3.406 9 O -0.537 6.537 10 N -0.704 5.704 11 C 0.106 3.894 12 C 0.058 3.942 13 O -0.522 6.522 14 C 0.135 3.865 15 N -0.600 5.600 16 C -0.213 4.213 17 H 0.083 0.917 18 C -0.009 4.009 19 N -0.920 5.920 20 Si 0.915 3.085 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.136 3.864 25 C -0.230 4.230 26 S 0.204 5.796 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.407 0.593 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.362 0.638 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.252 0.748 43 H 0.033 0.967 44 H 0.077 0.923 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.102 11.996 4.712 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.082 4.082 5 C -0.245 4.245 6 N -0.155 5.155 7 C -0.120 4.120 8 C 0.377 3.623 9 O -0.415 6.415 10 N -0.356 5.356 11 C -0.019 4.019 12 C 0.015 3.985 13 O -0.325 6.325 14 C 0.008 3.992 15 N -0.325 5.325 16 C -0.340 4.340 17 H 0.101 0.899 18 C -0.205 4.205 19 N -0.567 5.567 20 Si 0.745 3.255 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.010 3.990 25 C -0.372 4.372 26 S 0.461 5.539 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.244 0.756 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.208 0.792 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.095 0.905 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -23.023 11.434 4.641 26.122 hybrid contribution 1.314 -0.212 -0.026 1.332 sum -21.709 11.222 4.615 24.870 Atomic orbital electron populations 1.22020 0.95104 1.02011 1.02305 1.21118 0.96002 0.96453 0.97644 1.21820 1.01547 0.94962 1.02054 1.20442 1.03474 0.84827 0.99435 1.27101 0.95428 1.00740 1.01227 1.66916 1.32368 0.98505 1.17677 1.20428 0.94222 0.92281 1.05109 1.17028 0.81032 0.86367 0.77899 1.90813 1.65638 1.26331 1.58706 1.45758 1.19152 1.12601 1.58109 1.22027 0.93559 0.87729 0.98535 1.23416 0.91143 0.89168 0.94815 1.86622 1.77195 1.24658 1.44074 1.22382 0.86061 0.92638 0.98168 1.45275 1.01613 1.56888 1.28691 1.18957 0.79708 1.26408 1.08908 0.89925 1.24794 0.98187 1.00079 0.97484 1.69832 1.33263 1.36011 1.17639 0.85999 0.84700 0.77350 0.77438 1.20416 1.21674 1.21771 1.22748 0.85533 1.00021 0.90696 1.26600 1.00997 1.04359 1.05203 1.82831 1.21207 0.97038 1.52779 0.92652 0.92304 0.92110 0.90223 0.92086 0.92250 0.92496 0.89439 0.88167 0.75614 0.90786 0.89963 0.79188 0.93018 0.93268 0.93758 0.94916 0.90487 0.79407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 8.89 37.16 0.33 -0.55 16 2 C -0.09 -0.59 2.91 -90.61 -0.26 -0.85 16 3 C -0.15 -0.79 9.19 37.16 0.34 -0.45 16 4 C -0.04 -0.28 5.27 -27.88 -0.15 -0.43 16 5 C 0.03 0.32 5.97 -13.61 -0.08 0.24 16 6 N -0.44 -5.30 10.12 -8.51 -0.09 -5.39 16 7 C 0.01 0.19 6.70 -84.53 -0.57 -0.38 16 8 C 0.59 9.17 7.80 -12.59 -0.10 9.07 16 9 O -0.54 -9.58 16.71 5.25 0.09 -9.49 16 10 N -0.70 -10.52 5.34 -61.43 -0.33 -10.85 16 11 C 0.11 1.72 5.42 -4.04 -0.02 1.69 16 12 C 0.06 1.11 1.73 -90.11 -0.16 0.95 16 13 O -0.52 -10.15 13.56 -35.23 -0.48 -10.63 16 14 C 0.13 2.87 8.11 -8.51 -0.07 2.80 16 15 N -0.60 -15.93 3.78 -184.75 -0.70 -16.63 16 16 C -0.21 -6.16 10.75 -15.06 -0.16 -6.32 16 17 H 0.08 2.31 7.83 -52.49 -0.41 1.90 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 19 N -0.92 -27.77 11.51 55.49 0.64 -27.13 16 20 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 C 0.14 3.25 6.83 -8.51 -0.06 3.19 16 25 C -0.23 -2.42 10.62 29.65 0.31 -2.11 16 26 S 0.20 1.53 21.37 -107.50 -2.30 -0.77 16 27 H 0.05 0.34 6.13 -51.93 -0.32 0.03 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.41 5.72 6.47 -40.82 -0.26 5.46 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.36 7.89 -51.93 -0.41 0.95 16 39 H 0.36 5.57 7.20 45.56 0.33 5.89 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 0.96 8.10 -51.93 -0.42 0.54 16 42 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.03 0.79 7.93 -51.93 -0.41 0.37 16 44 H 0.08 2.04 7.12 -51.93 -0.37 1.67 16 45 H 0.19 1.79 8.03 -52.48 -0.42 1.37 16 LS Contribution 385.37 15.07 5.81 5.81 Total: -1.00 -35.14 385.37 -9.17 -44.31 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.06 Total: 6.68 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -0.73 Total: 6.51 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.47 Total: -60.00 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.39 Total: -20.12 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.30 Total: -0.77 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.14 -9.17 -44.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672146639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.639 kcal (2) G-P(sol) polarization free energy of solvation -35.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 22.72 seconds