Wall clock time and date at job start Tue Mar 31 2020 22:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46807 * 2 1 4 4 C 1.50691 * 109.47459 * 120.00333 * 2 1 3 5 5 N 1.30944 * 122.90527 * 305.18714 * 4 2 1 6 6 C 1.29421 * 117.36895 * 180.34725 * 5 4 2 7 7 S 1.70956 * 110.39118 * 359.71118 * 6 5 4 8 8 C 1.35661 * 122.90920 * 125.00073 * 4 2 1 9 9 C 1.46684 * 126.12721 * 359.95895 * 8 4 2 10 10 O 1.21682 * 120.00229 * 94.96115 * 9 8 4 11 11 N 1.34778 * 119.99798 * 274.96703 * 9 8 4 12 12 C 1.47154 * 120.97963 * 174.88512 * 11 9 8 13 13 C 1.53298 * 108.38592 * 129.48720 * 12 11 9 14 14 O 1.42959 * 109.22394 * 52.29760 * 13 12 11 15 15 C 1.42964 * 114.17028 * 297.41938 * 14 13 12 16 16 H 1.09000 * 109.55505 * 302.64021 * 15 14 13 17 17 C 1.52993 * 109.51367 * 182.50330 * 15 14 13 18 18 N 1.46504 * 109.47159 * 65.25773 * 17 15 14 19 19 C 1.36934 * 119.99909 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00219 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99758 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99893 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00154 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47401 * 59.99221 * 23 21 19 25 25 H 1.48494 * 109.47422 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47150 * 299.99837 * 23 21 19 27 27 C 1.47154 * 120.98302 * 354.90377 * 11 9 8 28 28 H 1.08994 * 109.47091 * 299.99442 * 1 2 3 29 29 H 1.09000 * 109.47432 * 60.00254 * 1 2 3 30 30 H 1.09007 * 109.46870 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47357 * 240.00748 * 2 1 3 32 32 H 1.08999 * 109.47267 * 60.00187 * 3 2 1 33 33 H 1.08996 * 109.46948 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46917 * 300.00061 * 3 2 1 35 35 H 1.08000 * 124.81161 * 179.73161 * 6 5 4 36 36 H 1.09007 * 109.68168 * 249.20473 * 12 11 9 37 37 H 1.08994 * 109.68320 * 9.72590 * 12 11 9 38 38 H 1.08993 * 109.51297 * 172.22674 * 13 12 11 39 39 H 1.09003 * 109.51104 * 292.37334 * 13 12 11 40 40 H 1.08995 * 109.47622 * 305.25401 * 17 15 14 41 41 H 1.09008 * 109.47061 * 185.25560 * 17 15 14 42 42 H 0.96996 * 119.99429 * 0.02562 * 18 17 15 43 43 H 0.97009 * 119.99816 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.68067 * 110.79683 * 27 11 9 45 45 H 1.08993 * 109.71386 * 350.25613 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2303 5 7 1.6723 -0.3733 2.4433 6 6 2.1749 -1.0525 3.4236 7 16 3.2185 -2.2702 2.8312 8 6 2.8940 -1.7569 1.1770 9 6 3.4591 -2.3507 -0.0394 10 8 4.5503 -1.9923 -0.4412 11 7 2.7696 -3.2933 -0.7122 12 6 3.2631 -3.8230 -1.9933 13 6 3.2491 -5.3542 -1.9210 14 8 1.9527 -5.7942 -1.5093 15 6 1.5727 -5.3542 -0.2032 16 1 2.3109 -5.6913 0.5245 17 6 0.2023 -5.9337 0.1528 18 7 0.3002 -7.3919 0.2546 19 6 -0.8087 -8.1325 0.5662 20 1 -1.7553 -7.6416 0.7373 21 6 -0.7158 -9.5141 0.6632 22 7 0.4380 -10.1122 0.4552 23 14 -2.2285 -10.5245 1.0875 24 1 -3.2746 -10.3067 0.0562 25 1 -1.8667 -11.9641 1.1287 26 1 -2.7471 -10.1058 2.4145 27 6 1.5009 -3.8229 -0.1875 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8901 32 1 1.6766 1.9564 0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9563 -0.8900 35 1 1.9647 -0.8755 4.4680 36 1 2.6151 -3.4879 -2.8032 37 1 4.2803 -3.4726 -2.1681 38 1 3.4788 -5.7672 -2.9032 39 1 3.9940 -5.6915 -1.2002 40 1 -0.5161 -5.6711 -0.6237 41 1 -0.1286 -5.5242 1.1073 42 1 1.1506 -7.8326 0.1020 43 1 0.5029 -11.0778 0.5226 44 1 0.6755 -3.4877 -0.8156 45 1 1.3507 -3.4729 0.8337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673321776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:14 Heat of formation + Delta-G solvation = -18.284968 kcal Electronic energy + Delta-G solvation = -27977.637141 eV Core-core repulsion = 24122.687331 eV Total energy + Delta-G solvation = -3854.949810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.96347 -39.84460 -38.31390 -35.20220 -34.96539 -34.59642 -32.32071 -31.00731 -30.03435 -28.11805 -27.37141 -26.07510 -25.64617 -23.66138 -22.91650 -22.46810 -21.17862 -20.59537 -18.79811 -18.08240 -17.55807 -17.15245 -16.77036 -16.31227 -15.67056 -15.15385 -15.07457 -14.86051 -14.61384 -14.41366 -14.37757 -14.27772 -13.85975 -13.32940 -13.16728 -13.12223 -12.76217 -12.57729 -12.48993 -12.36197 -12.29858 -11.67960 -11.43043 -11.24957 -11.17088 -11.06628 -10.93450 -10.80561 -10.69048 -10.38291 -10.09907 -9.98785 -9.94676 -9.73082 -9.65128 -9.13695 -8.89829 -8.67871 -6.93559 -5.75786 -3.05108 0.18091 0.77275 1.31634 2.34363 2.44794 2.71406 3.44228 3.48494 3.49692 3.81341 3.88920 4.18270 4.52872 4.55132 4.64614 4.71145 4.86162 4.89273 5.02608 5.04683 5.09782 5.13285 5.20489 5.35196 5.43443 5.52589 5.56546 5.56673 5.62838 5.68143 5.70365 5.78847 5.82762 5.84838 6.00468 6.09241 6.14877 6.20627 6.46320 6.62082 6.99804 7.33890 7.39224 7.68156 7.76295 8.41923 9.53735 10.09847 10.45608 11.46785 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013637 B = 0.003125 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.813335 B = 8957.171152 C = 9585.897263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.024 4.024 3 C -0.140 4.140 4 C 0.122 3.878 5 N -0.461 5.461 6 C 0.021 3.979 7 S 0.193 5.807 8 C -0.282 4.282 9 C 0.602 3.398 10 O -0.526 6.526 11 N -0.599 5.599 12 C 0.077 3.923 13 C 0.047 3.953 14 O -0.356 6.356 15 C 0.074 3.926 16 H 0.064 0.936 17 C 0.164 3.836 18 N -0.726 5.726 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.082 3.918 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.206 0.794 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.055 0.945 40 H 0.030 0.970 41 H 0.034 0.966 42 H 0.387 0.613 43 H 0.256 0.744 44 H 0.084 0.916 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.729 21.825 1.050 22.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.045 4.045 3 C -0.198 4.198 4 C -0.015 4.015 5 N -0.174 5.174 6 C -0.275 4.275 7 S 0.449 5.551 8 C -0.406 4.406 9 C 0.387 3.613 10 O -0.402 6.402 11 N -0.333 5.333 12 C -0.045 4.045 13 C -0.031 4.031 14 O -0.274 6.274 15 C 0.015 3.985 16 H 0.082 0.918 17 C 0.036 3.964 18 N -0.370 5.370 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.042 4.042 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.223 0.777 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.221 0.779 43 H 0.065 0.935 44 H 0.102 0.898 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.284 21.483 1.447 22.430 hybrid contribution -0.657 -0.218 -0.185 0.717 sum 5.627 21.265 1.262 22.033 Atomic orbital electron populations 1.21784 0.92996 1.02435 1.02624 1.19836 0.96908 0.96090 0.91667 1.21774 1.01164 0.94312 1.02512 1.20453 0.94140 0.93329 0.93555 1.65911 1.24779 1.28376 0.98340 1.28688 0.98497 0.96656 1.03617 1.84263 1.42692 1.32437 0.95717 1.25358 1.10215 1.06369 0.98697 1.16769 0.83989 0.78824 0.81708 1.90833 1.19622 1.61457 1.68333 1.48079 1.23680 1.38838 1.22674 1.22466 1.02042 0.95499 0.84501 1.22946 0.86613 0.91919 1.01668 1.88170 1.32539 1.74066 1.32583 1.22784 0.99571 0.90683 0.85456 0.91758 1.20605 0.90938 0.87147 0.97728 1.42209 1.10837 0.99244 1.84726 1.19161 0.89391 0.88984 1.39788 0.91185 1.24743 0.96937 0.96542 1.02587 1.69664 1.23323 1.08954 1.55997 0.86259 0.82267 0.79382 0.78203 1.21227 1.21687 1.21257 1.22517 0.85326 0.95607 1.00708 0.91426 0.91934 0.92444 0.90101 0.91678 0.92622 0.91841 0.77722 0.90144 0.88071 0.87465 0.92708 0.95192 0.94850 0.77862 0.93452 0.89792 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.09 37.16 0.34 -0.93 16 2 C -0.02 -0.24 3.20 -91.77 -0.29 -0.54 16 3 C -0.14 -1.27 9.18 37.16 0.34 -0.93 16 4 C 0.12 1.41 5.38 -83.90 -0.45 0.95 16 5 N -0.46 -5.03 10.31 -11.54 -0.12 -5.15 16 6 C 0.02 0.18 12.22 51.75 0.63 0.82 16 7 S 0.19 1.93 23.21 -107.50 -2.50 -0.56 16 8 C -0.28 -3.47 4.26 -37.09 -0.16 -3.63 16 9 C 0.60 8.36 6.45 -12.85 -0.08 8.28 16 10 O -0.53 -8.67 16.58 5.21 0.09 -8.58 16 11 N -0.60 -7.72 3.02 -173.81 -0.52 -8.24 16 12 C 0.08 0.90 6.65 -3.53 -0.02 0.88 16 13 C 0.05 0.60 6.98 37.31 0.26 0.86 16 14 O -0.36 -6.07 10.33 -35.23 -0.36 -6.44 16 15 C 0.07 1.20 2.81 -26.58 -0.07 1.13 16 16 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 17 C 0.16 3.21 5.93 -4.04 -0.02 3.19 16 18 N -0.73 -18.42 5.55 -59.91 -0.33 -18.75 16 19 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 23 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 C 0.08 1.06 5.80 -3.53 -0.02 1.04 16 28 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.88 7.11 -51.93 -0.37 0.51 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.21 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.10 1.16 7.06 -51.93 -0.37 0.80 16 38 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 42 H 0.39 10.51 7.67 -40.82 -0.31 10.20 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.09 1.09 6.49 -51.93 -0.34 0.75 16 LS Contribution 384.69 15.07 5.80 5.80 Total: -1.00 -33.90 384.69 -8.90 -42.80 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.85 Total: 5.60 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 0.20 Total: 3.77 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.25 Total: -59.66 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.28 Total: -15.02 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.50 Total: -0.56 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.90 -8.90 -42.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673321776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.518 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds