Wall clock time and date at job start Tue Mar 31 2020 22:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46807 * 2 1 4 4 C 1.50691 * 109.47459 * 120.00333 * 2 1 3 5 5 N 1.30944 * 122.90527 * 305.18714 * 4 2 1 6 6 C 1.29421 * 117.36895 * 180.34725 * 5 4 2 7 7 S 1.70956 * 110.39118 * 359.71118 * 6 5 4 8 8 C 1.35661 * 122.90920 * 125.00073 * 4 2 1 9 9 C 1.46684 * 126.12721 * 359.95895 * 8 4 2 10 10 O 1.21682 * 120.00229 * 94.96115 * 9 8 4 11 11 N 1.34778 * 119.99798 * 274.96703 * 9 8 4 12 12 C 1.47154 * 120.97963 * 174.88512 * 11 9 8 13 13 C 1.53298 * 108.38592 * 129.48720 * 12 11 9 14 14 O 1.42959 * 109.22394 * 52.29760 * 13 12 11 15 15 C 1.42964 * 114.17028 * 297.41938 * 14 13 12 16 16 H 1.09000 * 109.55505 * 302.64021 * 15 14 13 17 17 C 1.52993 * 109.51367 * 182.50330 * 15 14 13 18 18 N 1.46504 * 109.47159 * 65.25773 * 17 15 14 19 19 C 1.36934 * 119.99909 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00219 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99758 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99893 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00154 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47401 * 59.99221 * 23 21 19 25 25 H 1.48494 * 109.47422 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47150 * 299.99837 * 23 21 19 27 27 C 1.47154 * 120.98302 * 354.90377 * 11 9 8 28 28 H 1.08994 * 109.47091 * 299.99442 * 1 2 3 29 29 H 1.09000 * 109.47432 * 60.00254 * 1 2 3 30 30 H 1.09007 * 109.46870 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47357 * 240.00748 * 2 1 3 32 32 H 1.08999 * 109.47267 * 60.00187 * 3 2 1 33 33 H 1.08996 * 109.46948 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46917 * 300.00061 * 3 2 1 35 35 H 1.08000 * 124.81161 * 179.73161 * 6 5 4 36 36 H 1.09007 * 109.68168 * 249.20473 * 12 11 9 37 37 H 1.08994 * 109.68320 * 9.72590 * 12 11 9 38 38 H 1.08993 * 109.51297 * 172.22674 * 13 12 11 39 39 H 1.09003 * 109.51104 * 292.37334 * 13 12 11 40 40 H 1.08995 * 109.47622 * 305.25401 * 17 15 14 41 41 H 1.09008 * 109.47061 * 185.25560 * 17 15 14 42 42 H 0.96996 * 119.99429 * 0.02562 * 18 17 15 43 43 H 0.97009 * 119.99816 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.68067 * 110.79683 * 27 11 9 45 45 H 1.08993 * 109.71386 * 350.25613 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2303 5 7 1.6723 -0.3733 2.4433 6 6 2.1749 -1.0525 3.4236 7 16 3.2185 -2.2702 2.8312 8 6 2.8940 -1.7569 1.1770 9 6 3.4591 -2.3507 -0.0394 10 8 4.5503 -1.9923 -0.4412 11 7 2.7696 -3.2933 -0.7122 12 6 3.2631 -3.8230 -1.9933 13 6 3.2491 -5.3542 -1.9210 14 8 1.9527 -5.7942 -1.5093 15 6 1.5727 -5.3542 -0.2032 16 1 2.3109 -5.6913 0.5245 17 6 0.2023 -5.9337 0.1528 18 7 0.3002 -7.3919 0.2546 19 6 -0.8087 -8.1325 0.5662 20 1 -1.7553 -7.6416 0.7373 21 6 -0.7158 -9.5141 0.6632 22 7 0.4380 -10.1122 0.4552 23 14 -2.2285 -10.5245 1.0875 24 1 -3.2746 -10.3067 0.0562 25 1 -1.8667 -11.9641 1.1287 26 1 -2.7471 -10.1058 2.4145 27 6 1.5009 -3.8229 -0.1875 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8901 32 1 1.6766 1.9564 0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9563 -0.8900 35 1 1.9647 -0.8755 4.4680 36 1 2.6151 -3.4879 -2.8032 37 1 4.2803 -3.4726 -2.1681 38 1 3.4788 -5.7672 -2.9032 39 1 3.9940 -5.6915 -1.2002 40 1 -0.5161 -5.6711 -0.6237 41 1 -0.1286 -5.5242 1.1073 42 1 1.1506 -7.8326 0.1020 43 1 0.5029 -11.0778 0.5226 44 1 0.6755 -3.4877 -0.8156 45 1 1.3507 -3.4729 0.8337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673321776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:59 Heat of formation + Delta-G solvation = -41.707514 kcal Electronic energy + Delta-G solvation = -27978.652819 eV Core-core repulsion = 24122.687331 eV Total energy + Delta-G solvation = -3855.965488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 14.74 seconds Orbital eigenvalues (eV) -41.92646 -40.80946 -39.50135 -36.60464 -36.01866 -35.83740 -33.95528 -32.24504 -31.41124 -29.30390 -28.07804 -27.25563 -26.86519 -24.99325 -24.30962 -23.37225 -22.54865 -21.61400 -19.76602 -19.23195 -18.88338 -18.44618 -17.91652 -17.45502 -16.81144 -16.60833 -16.22217 -15.96664 -15.73739 -15.57030 -15.33069 -15.15824 -15.02678 -14.89902 -14.44357 -14.28909 -14.03522 -13.85293 -13.51708 -13.32431 -13.06617 -13.01878 -12.76037 -12.66772 -12.32749 -12.16557 -12.10730 -12.00489 -11.93502 -11.89197 -11.78010 -11.45637 -11.21788 -10.93848 -10.76030 -10.51264 -9.93089 -9.79483 -8.99656 -7.92325 -5.21892 -0.61281 -0.05908 0.54670 1.39634 1.49404 1.52964 1.54195 1.58923 1.73520 2.57865 2.69093 3.06982 3.23530 3.41896 3.45765 3.74847 3.79511 3.90415 3.96507 4.02758 4.10800 4.15601 4.25742 4.31361 4.33205 4.40113 4.43373 4.56834 4.65491 4.77541 4.78389 4.81688 4.91924 4.92567 4.95130 5.06572 5.10333 5.14772 5.28628 5.37549 5.50489 5.95345 6.16947 6.28398 6.54361 6.71868 7.35142 8.08990 8.32818 9.31148 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013637 B = 0.003125 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.813335 B = 8957.171152 C = 9585.897263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.028 4.028 3 C -0.134 4.134 4 C 0.127 3.873 5 N -0.480 5.480 6 C 0.043 3.957 7 S 0.194 5.806 8 C -0.316 4.316 9 C 0.606 3.394 10 O -0.559 6.559 11 N -0.598 5.598 12 C 0.080 3.920 13 C 0.045 3.955 14 O -0.383 6.383 15 C 0.083 3.917 16 H 0.051 0.949 17 C 0.162 3.838 18 N -0.741 5.741 19 C -0.246 4.246 20 H 0.080 0.920 21 C -0.076 4.076 22 N -0.970 5.970 23 Si 0.975 3.025 24 H -0.278 1.278 25 H -0.297 1.297 26 H -0.275 1.275 27 C 0.096 3.904 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.245 0.755 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.129 0.871 39 H 0.047 0.953 40 H 0.032 0.968 41 H 0.050 0.950 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.097 0.903 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.381 23.356 1.637 23.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.049 4.049 3 C -0.192 4.192 4 C -0.010 4.010 5 N -0.193 5.193 6 C -0.252 4.252 7 S 0.450 5.550 8 C -0.440 4.440 9 C 0.392 3.608 10 O -0.438 6.438 11 N -0.330 5.330 12 C -0.041 4.041 13 C -0.032 4.032 14 O -0.302 6.302 15 C 0.024 3.976 16 H 0.069 0.931 17 C 0.035 3.965 18 N -0.384 5.384 19 C -0.378 4.378 20 H 0.098 0.902 21 C -0.268 4.268 22 N -0.621 5.621 23 Si 0.804 3.196 24 H -0.204 1.204 25 H -0.224 1.224 26 H -0.201 1.201 27 C -0.027 4.027 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.261 0.739 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.146 0.854 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.206 0.794 43 H 0.059 0.941 44 H 0.115 0.885 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.911 23.057 2.033 23.662 hybrid contribution -0.210 -0.612 -0.341 0.731 sum 4.701 22.445 1.692 22.994 Atomic orbital electron populations 1.21737 0.91968 1.02258 1.03246 1.19916 0.97710 0.96398 0.90907 1.21730 1.00281 0.93844 1.03345 1.20677 0.93385 0.92691 0.94269 1.65984 1.25742 1.29161 0.98440 1.29391 0.96275 0.94723 1.04840 1.84269 1.43164 1.33019 0.94549 1.25268 1.11948 1.07752 0.99038 1.16948 0.83423 0.78485 0.81900 1.90805 1.21030 1.62662 1.69306 1.48117 1.23495 1.38570 1.22853 1.22504 1.02677 0.94388 0.84578 1.23123 0.84711 0.92942 1.02398 1.88115 1.34449 1.75004 1.32644 1.22549 0.97293 0.92585 0.85125 0.93061 1.20763 0.93088 0.84230 0.98408 1.42418 1.09666 1.01577 1.84700 1.19622 0.90374 0.89563 1.38232 0.90197 1.25596 0.99802 0.97858 1.03536 1.69835 1.25505 1.08730 1.57987 0.85189 0.78858 0.77170 0.78399 1.20397 1.22360 1.20055 1.22338 0.85739 0.92982 1.01659 0.91653 0.90440 0.92975 0.91006 0.91672 0.93904 0.90161 0.73933 0.88435 0.87774 0.85371 0.93485 0.95026 0.93253 0.79417 0.94065 0.88483 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.09 71.98 0.65 -1.52 16 2 C -0.03 -0.54 3.20 -11.54 -0.04 -0.58 16 3 C -0.13 -2.28 9.18 71.98 0.66 -1.62 16 4 C 0.13 2.76 5.38 42.09 0.23 2.99 16 5 N -0.48 -9.52 10.31 -190.41 -1.96 -11.48 16 6 C 0.04 0.64 12.22 130.60 1.60 2.24 16 7 S 0.19 3.64 23.21 -56.49 -1.31 2.33 16 8 C -0.32 -7.52 4.26 23.88 0.10 -7.42 16 9 C 0.61 16.60 6.45 86.45 0.56 17.16 16 10 O -0.56 -18.52 16.58 -4.29 -0.07 -18.59 16 11 N -0.60 -14.94 3.02 -822.03 -2.48 -17.42 16 12 C 0.08 1.81 6.65 86.35 0.57 2.38 16 13 C 0.05 1.16 6.98 72.08 0.50 1.66 16 14 O -0.38 -13.00 10.33 -148.98 -1.54 -14.54 16 15 C 0.08 2.68 2.81 30.69 0.09 2.76 16 16 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 17 C 0.16 6.23 5.93 86.38 0.51 6.74 16 18 N -0.74 -37.79 5.55 -343.46 -1.91 -39.69 16 19 C -0.25 -13.67 9.99 84.03 0.84 -12.83 16 20 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 21 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 22 N -0.97 -59.79 13.06 21.65 0.28 -59.51 16 23 Si 0.98 45.77 29.55 68.60 2.03 47.80 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 25 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 27 C 0.10 2.38 5.80 86.36 0.50 2.88 16 28 H 0.06 1.09 8.08 -2.39 -0.02 1.07 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.07 1.49 7.11 -2.39 -0.02 1.48 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.24 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.10 2.33 7.06 -2.39 -0.02 2.31 16 38 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 41 H 0.05 1.76 8.14 -2.38 -0.02 1.75 16 42 H 0.37 20.76 7.67 -92.71 -0.71 20.05 16 43 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 44 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.10 2.26 6.49 -2.39 -0.02 2.24 16 Total: -1.00 -73.10 384.69 0.57 -72.53 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.29 Total: 27.60 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 7.24 Total: 10.98 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -6.07 Total: -128.10 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -1.61 Total: -33.13 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.31 Total: 2.33 kcal Total: -73.10 0.57 -72.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673321776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.818 kcal (2) G-P(sol) polarization free energy of solvation -73.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.74 seconds