Wall clock time and date at job start Wed Apr 1 2020 01:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46668 * 2 1 4 4 N 1.46499 * 109.46965 * 119.99602 * 2 1 3 5 5 C 1.46498 * 119.99876 * 124.08178 * 4 2 1 6 6 C 1.53002 * 109.46964 * 263.02017 * 5 4 2 7 7 N 1.46508 * 109.46991 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00241 * 270.00305 * 7 6 5 9 9 C 1.36937 * 119.99593 * 89.99907 * 7 6 5 10 10 H 1.07999 * 119.99983 * 34.15293 * 9 7 6 11 11 C 1.38810 * 120.00089 * 214.15174 * 9 7 6 12 12 N 1.31620 * 119.99991 * 5.38935 * 11 9 7 13 13 Si 1.86797 * 120.00193 * 185.38878 * 11 9 7 14 14 H 1.48503 * 109.46827 * 60.00465 * 13 11 9 15 15 H 1.48499 * 109.47247 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47438 * 300.00123 * 13 11 9 17 17 C 1.34774 * 120.00341 * 304.07761 * 4 2 1 18 18 O 1.21684 * 120.00057 * 2.68383 * 17 4 2 19 19 C 1.46733 * 120.00027 * 182.68640 * 17 4 2 20 20 C 1.34875 * 125.05381 * 171.95158 * 19 17 4 21 21 C 1.38940 * 113.65290 * 180.02562 * 20 19 17 22 22 C 1.47332 * 122.96416 * 180.02562 * 21 20 19 23 23 N 1.34774 * 120.00418 * 179.97438 * 22 21 20 24 24 O 1.21621 * 119.99881 * 359.97438 * 22 21 20 25 25 C 1.36661 * 114.07817 * 359.97438 * 21 20 19 26 26 S 1.70598 * 110.52765 * 359.72865 * 25 21 20 27 27 H 1.08996 * 109.47308 * 305.40160 * 1 2 3 28 28 H 1.08994 * 109.47309 * 65.40515 * 1 2 3 29 29 H 1.09003 * 109.46879 * 185.40493 * 1 2 3 30 30 H 1.08994 * 109.47352 * 239.99963 * 2 1 3 31 31 H 1.09000 * 109.46880 * 184.94550 * 3 2 1 32 32 H 1.09001 * 109.47294 * 304.93412 * 3 2 1 33 33 H 1.08995 * 109.47623 * 64.94470 * 3 2 1 34 34 H 1.09004 * 109.47132 * 23.01609 * 5 4 2 35 35 H 1.08994 * 109.47499 * 143.01686 * 5 4 2 36 36 H 1.08993 * 109.47291 * 299.99601 * 6 5 4 37 37 H 1.08994 * 109.46997 * 60.00453 * 6 5 4 38 38 H 1.08991 * 109.46995 * 94.88672 * 8 7 6 39 39 H 1.08994 * 109.46880 * 214.88836 * 8 7 6 40 40 H 1.09000 * 109.46811 * 334.88697 * 8 7 6 41 41 H 0.96999 * 120.00115 * 179.97438 * 12 11 9 42 42 H 1.07998 * 123.17531 * 0.02562 * 20 19 17 43 43 H 0.97005 * 119.99592 * 359.97438 * 23 22 21 44 44 H 0.97000 * 120.00400 * 180.02562 * 23 22 21 45 45 H 1.07999 * 124.73809 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.9328 -1.8274 1.0637 6 6 2.1373 -3.1325 1.1332 7 7 3.0517 -4.2694 1.0001 8 6 3.3573 -4.8124 -0.3258 9 6 3.6209 -4.8244 2.1151 10 1 3.0678 -4.8618 3.0420 11 6 4.9086 -5.3389 2.0541 12 7 5.6219 -5.1989 0.9568 13 14 5.6294 -6.2299 3.5293 14 1 4.7872 -7.4087 3.8554 15 1 7.0085 -6.6791 3.2110 16 1 5.6655 -5.3098 4.6942 17 6 1.6264 -0.2799 2.4186 18 8 0.8290 0.6328 2.5272 19 6 2.1612 -0.9335 3.6185 20 6 1.9630 -0.5113 4.8841 21 6 2.5795 -1.3085 5.8406 22 6 2.4961 -1.0357 7.2861 23 7 3.1176 -1.8495 8.1624 24 8 1.8665 -0.0762 7.6885 25 6 3.2691 -2.3686 5.3226 26 16 3.1485 -2.3867 3.6210 27 1 -0.3634 0.5953 0.8376 28 1 -0.3633 0.4277 -0.9344 29 1 -0.3633 -1.0231 0.0968 30 1 1.8934 -0.5138 -0.8899 31 1 3.1263 1.4439 -0.0886 32 1 1.6062 1.9812 -0.8425 33 1 1.7507 1.9302 0.9309 34 1 3.4502 -1.7678 0.1062 35 1 3.6624 -1.8030 1.8730 36 1 1.6199 -3.1921 2.0907 37 1 1.4078 -3.1568 0.3238 38 1 4.2761 -4.3613 -0.7002 39 1 3.4852 -5.8925 -0.2553 40 1 2.5377 -4.5873 -1.0082 41 1 6.5220 -5.5581 0.9143 42 1 1.3801 0.3637 5.1307 43 1 3.6195 -2.6150 7.8414 44 1 3.0624 -1.6701 9.1141 45 1 3.8105 -3.0962 5.9089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677219505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:23:48 Heat of formation + Delta-G solvation = -12.351849 kcal Electronic energy + Delta-G solvation = -28551.775982 eV Core-core repulsion = 24697.083451 eV Total energy + Delta-G solvation = -3854.692531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.02671 -39.48064 -36.91656 -36.10527 -35.27853 -33.65679 -33.03729 -31.36930 -29.24094 -28.05431 -27.00334 -26.14177 -25.16088 -24.00833 -23.31939 -21.20857 -20.83513 -19.39256 -18.70779 -17.69402 -17.17290 -16.79210 -16.62209 -15.81914 -15.49336 -15.23730 -14.76587 -14.51687 -14.43044 -14.05924 -13.79490 -13.50600 -13.33693 -13.15084 -13.07663 -12.67982 -12.46033 -12.36866 -12.09879 -11.81436 -11.74153 -11.67770 -11.25050 -11.10021 -11.07021 -10.93879 -10.79966 -10.55471 -10.48864 -10.24896 -10.12268 -9.66451 -9.57255 -9.34650 -8.83723 -8.66978 -8.40425 -7.87930 -6.89802 -6.07527 -3.64414 0.81667 1.96530 2.03047 2.37640 3.09679 3.15988 3.20888 3.22522 3.33809 3.69202 3.73053 4.17491 4.72661 5.09597 5.13665 5.20135 5.21488 5.26086 5.29746 5.42694 5.48435 5.62125 5.76948 5.79661 5.81387 5.96709 5.98336 6.07460 6.08690 6.22715 6.30475 6.42026 6.49130 6.54051 6.54689 6.60178 6.81993 6.92338 7.09353 7.39093 7.46907 7.51184 7.65539 8.12944 8.36182 8.46872 8.89521 9.49493 10.06788 10.92499 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007635 B = 0.006707 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3666.301002 B = 4173.659125 C = 7447.302946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.148 3.852 3 C -0.167 4.167 4 N -0.604 5.604 5 C 0.072 3.928 6 C 0.128 3.872 7 N -0.594 5.594 8 C 0.154 3.846 9 C -0.261 4.261 10 H 0.069 0.931 11 C 0.024 3.976 12 N -0.882 5.882 13 Si 0.890 3.110 14 H -0.277 1.277 15 H -0.285 1.285 16 H -0.278 1.278 17 C 0.595 3.405 18 O -0.539 6.539 19 C -0.330 4.330 20 C -0.018 4.018 21 C -0.185 4.185 22 C 0.584 3.416 23 N -0.854 5.854 24 O -0.550 6.550 25 C -0.268 4.268 26 S 0.410 5.590 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.003 0.997 41 H 0.260 0.740 42 H 0.147 0.853 43 H 0.400 0.600 44 H 0.401 0.599 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.486 4.095 1.467 5.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.045 3.955 3 C -0.225 4.225 4 N -0.337 5.337 5 C -0.056 4.056 6 C -0.002 4.002 7 N -0.317 5.317 8 C 0.010 3.990 9 C -0.395 4.395 10 H 0.086 0.914 11 C -0.180 4.180 12 N -0.523 5.523 13 Si 0.719 3.281 14 H -0.203 1.203 15 H -0.210 1.210 16 H -0.204 1.204 17 C 0.384 3.616 18 O -0.419 6.419 19 C -0.449 4.449 20 C -0.050 4.050 21 C -0.202 4.202 22 C 0.370 3.630 23 N -0.418 5.418 24 O -0.428 6.428 25 C -0.408 4.408 26 S 0.687 5.313 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.021 0.979 41 H 0.070 0.930 42 H 0.165 0.835 43 H 0.229 0.771 44 H 0.231 0.769 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.596 4.221 0.416 4.973 hybrid contribution 0.570 -0.172 2.272 2.349 sum -2.027 4.049 2.689 5.266 Atomic orbital electron populations 1.22248 0.94773 1.02714 1.03014 1.20994 0.94782 0.92965 0.86780 1.22179 1.00839 0.96225 1.03226 1.48099 1.47623 1.32672 1.05314 1.23063 0.93050 0.86444 1.03004 1.21534 0.92786 0.86017 0.99827 1.43762 1.53067 1.30864 1.03995 1.20905 0.96074 0.97873 0.84168 1.18995 0.95214 1.34910 0.90341 0.91365 1.25355 0.95853 0.99808 0.96935 1.69953 1.10191 1.45901 1.26249 0.86565 0.78839 0.80294 0.82433 1.20297 1.21030 1.20438 1.17017 0.80573 0.82138 0.81911 1.90697 1.34390 1.30355 1.86423 1.24888 1.15148 1.07434 0.97446 1.20012 0.96485 0.98965 0.89490 1.18769 1.07911 0.99899 0.93663 1.17863 0.77633 0.81559 0.85957 1.43692 1.56264 1.31764 1.10055 1.90797 1.42430 1.29358 1.80260 1.27292 1.03249 1.01510 1.08757 1.86907 1.38596 1.13740 0.92095 0.89847 0.92339 0.92661 0.89583 0.92811 0.91938 0.90897 0.89139 0.90172 0.92865 0.93187 0.94474 0.94335 0.97890 0.92952 0.83499 0.77076 0.76859 0.82237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 8.94 37.16 0.33 -1.90 16 2 C 0.15 1.99 3.27 -67.93 -0.22 1.77 16 3 C -0.17 -2.13 9.24 37.16 0.34 -1.79 16 4 N -0.60 -9.51 2.44 -167.62 -0.41 -9.92 16 5 C 0.07 1.19 5.26 -4.04 -0.02 1.16 16 6 C 0.13 2.25 5.21 -4.04 -0.02 2.23 16 7 N -0.59 -12.33 2.89 -181.12 -0.52 -12.86 16 8 C 0.15 3.19 9.08 59.85 0.54 3.73 16 9 C -0.26 -5.78 7.41 -15.06 -0.11 -5.90 16 10 H 0.07 1.47 6.72 -52.49 -0.35 1.12 16 11 C 0.02 0.55 5.26 -17.43 -0.09 0.46 16 12 N -0.88 -21.72 11.03 55.49 0.61 -21.11 16 13 Si 0.89 18.29 29.56 -169.99 -5.02 13.27 16 14 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 15 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 17 C 0.59 10.54 6.97 -12.83 -0.09 10.45 16 18 O -0.54 -10.45 13.10 5.20 0.07 -10.38 16 19 C -0.33 -5.74 6.08 -37.35 -0.23 -5.97 16 20 C -0.02 -0.31 9.48 -40.51 -0.38 -0.70 16 21 C -0.18 -2.99 5.82 -106.51 -0.62 -3.61 16 22 C 0.58 9.17 8.06 -12.56 -0.10 9.06 16 23 N -0.85 -9.34 8.84 30.41 0.27 -9.07 16 24 O -0.55 -10.53 17.53 5.26 0.09 -10.44 16 25 C -0.27 -4.03 10.41 30.16 0.31 -3.72 16 26 S 0.41 6.85 12.03 -107.50 -1.29 5.56 16 27 H 0.08 1.28 6.00 -51.93 -0.31 0.97 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.04 7.74 -51.93 -0.40 0.64 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.10 6.45 -51.93 -0.34 0.76 16 34 H 0.09 1.46 7.81 -51.93 -0.41 1.06 16 35 H 0.08 1.43 4.35 -21.35 -0.09 1.34 16 36 H 0.05 0.96 6.01 -46.37 -0.28 0.68 16 37 H 0.05 0.84 7.86 -51.93 -0.41 0.43 16 38 H 0.04 0.83 7.17 -51.93 -0.37 0.45 16 39 H 0.04 0.86 7.85 -51.93 -0.41 0.45 16 40 H 0.00 0.05 7.84 -51.93 -0.41 -0.36 16 41 H 0.26 6.31 8.31 -40.82 -0.34 5.97 16 42 H 0.15 2.70 7.96 -52.49 -0.42 2.28 16 43 H 0.40 3.49 7.29 -40.82 -0.30 3.20 16 44 H 0.40 3.60 8.93 -40.82 -0.36 3.24 16 45 H 0.16 1.97 6.99 -52.49 -0.37 1.61 16 LS Contribution 367.06 15.07 5.53 5.53 Total: -1.00 -28.18 367.06 -7.08 -35.26 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -6.05 Total: 8.86 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -0.36 Total: 5.30 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.05 Total: -52.96 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: 0.16 Total: -20.82 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.02 Total: 13.27 kcal Atomic # 16 Polarization: 6.85 SS G_CDS: -1.29 Total: 5.56 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.18 -7.08 -35.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677219505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.904 kcal (2) G-P(sol) polarization free energy of solvation -28.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds