Wall clock time and date at job start Wed Apr 1 2020 01:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46668 * 2 1 4 4 N 1.46499 * 109.46965 * 119.99602 * 2 1 3 5 5 C 1.46498 * 119.99876 * 124.08178 * 4 2 1 6 6 C 1.53002 * 109.46964 * 263.02017 * 5 4 2 7 7 N 1.46508 * 109.46991 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00241 * 270.00305 * 7 6 5 9 9 C 1.36937 * 119.99593 * 89.99907 * 7 6 5 10 10 H 1.07999 * 119.99983 * 34.15293 * 9 7 6 11 11 C 1.38810 * 120.00089 * 214.15174 * 9 7 6 12 12 N 1.31620 * 119.99991 * 5.38935 * 11 9 7 13 13 Si 1.86797 * 120.00193 * 185.38878 * 11 9 7 14 14 H 1.48503 * 109.46827 * 60.00465 * 13 11 9 15 15 H 1.48499 * 109.47247 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47438 * 300.00123 * 13 11 9 17 17 C 1.34774 * 120.00341 * 304.07761 * 4 2 1 18 18 O 1.21684 * 120.00057 * 2.68383 * 17 4 2 19 19 C 1.46733 * 120.00027 * 182.68640 * 17 4 2 20 20 C 1.34875 * 125.05381 * 171.95158 * 19 17 4 21 21 C 1.38940 * 113.65290 * 180.02562 * 20 19 17 22 22 C 1.47332 * 122.96416 * 180.02562 * 21 20 19 23 23 N 1.34774 * 120.00418 * 179.97438 * 22 21 20 24 24 O 1.21621 * 119.99881 * 359.97438 * 22 21 20 25 25 C 1.36661 * 114.07817 * 359.97438 * 21 20 19 26 26 S 1.70598 * 110.52765 * 359.72865 * 25 21 20 27 27 H 1.08996 * 109.47308 * 305.40160 * 1 2 3 28 28 H 1.08994 * 109.47309 * 65.40515 * 1 2 3 29 29 H 1.09003 * 109.46879 * 185.40493 * 1 2 3 30 30 H 1.08994 * 109.47352 * 239.99963 * 2 1 3 31 31 H 1.09000 * 109.46880 * 184.94550 * 3 2 1 32 32 H 1.09001 * 109.47294 * 304.93412 * 3 2 1 33 33 H 1.08995 * 109.47623 * 64.94470 * 3 2 1 34 34 H 1.09004 * 109.47132 * 23.01609 * 5 4 2 35 35 H 1.08994 * 109.47499 * 143.01686 * 5 4 2 36 36 H 1.08993 * 109.47291 * 299.99601 * 6 5 4 37 37 H 1.08994 * 109.46997 * 60.00453 * 6 5 4 38 38 H 1.08991 * 109.46995 * 94.88672 * 8 7 6 39 39 H 1.08994 * 109.46880 * 214.88836 * 8 7 6 40 40 H 1.09000 * 109.46811 * 334.88697 * 8 7 6 41 41 H 0.96999 * 120.00115 * 179.97438 * 12 11 9 42 42 H 1.07998 * 123.17531 * 0.02562 * 20 19 17 43 43 H 0.97005 * 119.99592 * 359.97438 * 23 22 21 44 44 H 0.97000 * 120.00400 * 180.02562 * 23 22 21 45 45 H 1.07999 * 124.73809 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.9328 -1.8274 1.0637 6 6 2.1373 -3.1325 1.1332 7 7 3.0517 -4.2694 1.0001 8 6 3.3573 -4.8124 -0.3258 9 6 3.6209 -4.8244 2.1151 10 1 3.0678 -4.8618 3.0420 11 6 4.9086 -5.3389 2.0541 12 7 5.6219 -5.1989 0.9568 13 14 5.6294 -6.2299 3.5293 14 1 4.7872 -7.4087 3.8554 15 1 7.0085 -6.6791 3.2110 16 1 5.6655 -5.3098 4.6942 17 6 1.6264 -0.2799 2.4186 18 8 0.8290 0.6328 2.5272 19 6 2.1612 -0.9335 3.6185 20 6 1.9630 -0.5113 4.8841 21 6 2.5795 -1.3085 5.8406 22 6 2.4961 -1.0357 7.2861 23 7 3.1176 -1.8495 8.1624 24 8 1.8665 -0.0762 7.6885 25 6 3.2691 -2.3686 5.3226 26 16 3.1485 -2.3867 3.6210 27 1 -0.3634 0.5953 0.8376 28 1 -0.3633 0.4277 -0.9344 29 1 -0.3633 -1.0231 0.0968 30 1 1.8934 -0.5138 -0.8899 31 1 3.1263 1.4439 -0.0886 32 1 1.6062 1.9812 -0.8425 33 1 1.7507 1.9302 0.9309 34 1 3.4502 -1.7678 0.1062 35 1 3.6624 -1.8030 1.8730 36 1 1.6199 -3.1921 2.0907 37 1 1.4078 -3.1568 0.3238 38 1 4.2761 -4.3613 -0.7002 39 1 3.4852 -5.8925 -0.2553 40 1 2.5377 -4.5873 -1.0082 41 1 6.5220 -5.5581 0.9143 42 1 1.3801 0.3637 5.1307 43 1 3.6195 -2.6150 7.8414 44 1 3.0624 -1.6701 9.1141 45 1 3.8105 -3.0962 5.9089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677219505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:23:45 Heat of formation + Delta-G solvation = -30.664358 kcal Electronic energy + Delta-G solvation = -28552.570072 eV Core-core repulsion = 24697.083451 eV Total energy + Delta-G solvation = -3855.486621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 3.16 seconds Orbital eigenvalues (eV) -41.34951 -40.73810 -38.30706 -37.54431 -36.67486 -34.81639 -34.33394 -32.95079 -30.53957 -29.49550 -28.04375 -27.83227 -26.45610 -25.40713 -24.67605 -22.47022 -22.30540 -20.62826 -20.01100 -18.94925 -18.77830 -17.99332 -17.89173 -17.09341 -16.90964 -16.63762 -16.15870 -15.82604 -15.74364 -15.52266 -15.15777 -14.75353 -14.70902 -14.51193 -14.38601 -14.11570 -13.73502 -13.68723 -13.41245 -13.19992 -13.01123 -12.86315 -12.73357 -12.69526 -12.44964 -12.26227 -12.08593 -12.04640 -11.98229 -11.75704 -11.57879 -10.92069 -10.74850 -10.71256 -10.47503 -10.03624 -9.70748 -9.22459 -8.56456 -7.78906 -5.38332 -0.48609 0.64514 0.68520 1.06104 1.49751 1.56310 1.59747 1.91148 2.00182 2.42551 2.52509 2.62631 3.36470 3.46206 3.80258 3.96088 4.02950 4.10634 4.11897 4.17513 4.32160 4.36395 4.44816 4.60959 4.66285 4.72582 4.80487 4.89762 4.91693 4.99378 5.00332 5.07755 5.17472 5.19047 5.31836 5.38694 5.40989 5.71862 5.73009 5.82257 5.86607 6.31152 6.38268 6.43619 7.11436 7.18916 7.28083 7.85252 8.37928 9.19900 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007635 B = 0.006707 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3666.301002 B = 4173.659125 C = 7447.302946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 C -0.160 4.160 4 N -0.597 5.597 5 C 0.082 3.918 6 C 0.132 3.868 7 N -0.605 5.605 8 C 0.166 3.834 9 C -0.257 4.257 10 H 0.076 0.924 11 C -0.020 4.020 12 N -0.915 5.915 13 Si 0.931 3.069 14 H -0.280 1.280 15 H -0.300 1.300 16 H -0.255 1.255 17 C 0.589 3.411 18 O -0.561 6.561 19 C -0.335 4.335 20 C -0.029 4.029 21 C -0.191 4.191 22 C 0.582 3.418 23 N -0.828 5.828 24 O -0.592 6.592 25 C -0.249 4.249 26 S 0.400 5.600 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.108 0.892 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.017 0.983 39 H 0.013 0.987 40 H 0.031 0.969 41 H 0.251 0.749 42 H 0.132 0.868 43 H 0.415 0.585 44 H 0.414 0.586 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.538 3.773 1.890 4.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 C -0.218 4.218 4 N -0.329 5.329 5 C -0.046 4.046 6 C 0.004 3.996 7 N -0.328 5.328 8 C 0.021 3.979 9 C -0.390 4.390 10 H 0.094 0.906 11 C -0.219 4.219 12 N -0.558 5.558 13 Si 0.759 3.241 14 H -0.206 1.206 15 H -0.226 1.226 16 H -0.179 1.179 17 C 0.378 3.622 18 O -0.443 6.443 19 C -0.454 4.454 20 C -0.061 4.061 21 C -0.208 4.208 22 C 0.368 3.632 23 N -0.392 5.392 24 O -0.474 6.474 25 C -0.389 4.389 26 S 0.675 5.325 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.126 0.874 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.036 0.964 39 H 0.032 0.968 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.150 0.850 43 H 0.247 0.753 44 H 0.247 0.753 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -2.643 3.865 0.857 4.760 hybrid contribution 0.505 -0.019 2.172 2.230 sum -2.138 3.846 3.029 5.343 Atomic orbital electron populations 1.22175 0.94395 1.02141 1.03371 1.21303 0.95135 0.93431 0.86459 1.22120 1.01085 0.95756 1.02876 1.48112 1.46985 1.32248 1.05512 1.22855 0.92593 0.86111 1.02996 1.21510 0.92367 0.85492 1.00230 1.43913 1.53197 1.32006 1.03672 1.20697 0.96281 0.96110 0.84799 1.19225 0.94902 1.33907 0.90940 0.90642 1.25868 0.96423 1.01053 0.98577 1.70090 1.10087 1.47824 1.27806 0.85895 0.77254 0.79739 0.81261 1.20579 1.22632 1.17917 1.17161 0.80472 0.81998 0.82558 1.90693 1.35440 1.31336 1.86784 1.24836 1.15440 1.07751 0.97394 1.20062 0.96846 0.99008 0.90204 1.18801 1.08000 0.99997 0.93985 1.17838 0.77689 0.81579 0.86125 1.43454 1.54519 1.30940 1.10261 1.90784 1.44570 1.31329 1.80726 1.27497 1.02205 1.01288 1.07926 1.86829 1.38768 1.13427 0.93480 0.92380 0.89613 0.93073 0.87360 0.92600 0.89430 0.93533 0.88504 0.91111 0.93144 0.91848 0.96435 0.96775 0.95081 0.93905 0.85006 0.75349 0.75335 0.78964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 8.94 71.98 0.64 -3.37 16 2 C 0.14 3.48 3.27 44.99 0.15 3.63 16 3 C -0.16 -3.86 9.24 71.98 0.66 -3.20 16 4 N -0.60 -18.10 2.44 -802.46 -1.96 -20.05 16 5 C 0.08 2.58 5.26 86.38 0.45 3.04 16 6 C 0.13 4.45 5.21 86.38 0.45 4.90 16 7 N -0.60 -24.37 2.89 -726.95 -2.10 -26.47 16 8 C 0.17 6.74 9.08 127.77 1.16 7.90 16 9 C -0.26 -11.06 7.41 84.03 0.62 -10.44 16 10 H 0.08 3.10 6.72 -2.91 -0.02 3.09 16 11 C -0.02 -0.91 5.26 84.86 0.45 -0.46 16 12 N -0.91 -45.37 11.03 21.65 0.24 -45.13 16 13 Si 0.93 36.39 29.56 68.60 2.03 38.42 16 14 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 15 H -0.30 -12.38 7.11 99.48 0.71 -11.68 16 16 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 17 C 0.59 20.76 6.97 86.46 0.60 21.36 16 18 O -0.56 -22.06 13.10 -4.30 -0.06 -22.11 16 19 C -0.33 -11.53 6.08 23.72 0.14 -11.39 16 20 C -0.03 -1.01 9.48 21.66 0.21 -0.81 16 21 C -0.19 -5.90 5.82 -21.09 -0.12 -6.02 16 22 C 0.58 17.36 8.06 86.64 0.70 18.06 16 23 N -0.83 -15.68 8.84 -175.95 -1.56 -17.23 16 24 O -0.59 -22.47 17.53 -4.10 -0.07 -22.55 16 25 C -0.25 -6.84 10.41 67.45 0.70 -6.13 16 26 S 0.40 12.74 12.03 -56.49 -0.68 12.06 16 27 H 0.06 1.75 6.00 -2.39 -0.01 1.74 16 28 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.11 2.28 7.74 -2.39 -0.02 2.26 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 1.38 6.45 -2.39 -0.02 1.36 16 34 H 0.10 2.96 7.81 -2.38 -0.02 2.94 16 35 H 0.07 2.45 4.35 -21.83 -0.10 2.36 16 36 H 0.05 1.75 6.01 -5.93 -0.04 1.71 16 37 H 0.06 1.96 7.86 -2.39 -0.02 1.94 16 38 H 0.02 0.78 7.17 -2.39 -0.02 0.76 16 39 H 0.01 0.61 7.85 -2.39 -0.02 0.59 16 40 H 0.03 1.06 7.84 -2.39 -0.02 1.04 16 41 H 0.25 12.42 8.31 -92.71 -0.77 11.65 16 42 H 0.13 5.02 7.96 -2.91 -0.02 4.99 16 43 H 0.41 5.60 7.29 -92.70 -0.68 4.92 16 44 H 0.41 6.24 8.93 -92.71 -0.83 5.41 16 45 H 0.19 3.90 6.99 -2.91 -0.02 3.88 16 Total: -1.00 -61.75 367.06 2.10 -59.64 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: -0.57 Total: 26.36 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: 6.82 Total: 17.06 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -5.37 Total: -108.89 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -0.13 Total: -44.66 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Atomic # 16 Polarization: 12.74 SS G_CDS: -0.68 Total: 12.06 kcal Total: -61.75 2.10 -59.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677219505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.980 kcal (2) G-P(sol) polarization free energy of solvation -61.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.16 seconds